NONHSAT099544
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT099544 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
7559 nt |
Genomic location |
chr4+:185395989..185403547 |
Exon number |
1 |
Exons |
185395989..185403547 |
Genome context |
|
Sequence |
000001 AACAAGCAGC GGCTCGTGAG TCCGCGGCTC GCACCCAGGG GCGCCCGCAC GTGCGGCTAG AACGTCCGAG TCGGGGTccg 000080
000081 gggcgggggg cgcaggcccg cggcggTAGG GGAGGAGAGC GGGCACCCGA GTCTCCATCC TCAGGGTGGC CTGAAGGTTC 000160 000161 CAGGAGGGCG TCCGGCGAAG GCACGGGGCT GCGACCATCC AGTTAGCAGG GCTGGTGTGA CTGTTGAGAG TAAATGAAAA 000240 000241 TTCGTTTTGT GACACCGACC ACCTCCAAGG AATGAAAGGA GCAGTCAGCC GAAACGACAG CATTACTTGC GTCCTTACCT 000320 000321 AATTGGAACC TTATCCGTGG CTGAGGGTGC CACCATTGGA GGGGCCGCCG CCCCCTCTGA CACCACCTGG CGCTCCGCTC 000400 000401 CATTTAGGAG CTAGAACGAA AAGGAGGCCC ATCCCCCAGT AAGTCACAGC CCACGCCAAG ATGAGTTCTG GAGCCTGTGC 000480 000481 GACCGAAGTT TCTTCACCGC AGGGCGAGGT GGACAAGGGT GTGAGTTACT TTGACTTCAA GACGTCTCAG TGGCGGCTGG 000560 000561 TTCTGGAGAG AGGCTTTATG CTGGAGCACT TCCAGCAAAG TTCGGCTGGG GCCTCCTTAA CTCACTGGCT GGTCACCCTT 000640 000641 GGCCTCGGTT TTCAACCAAA GCCTAAGGCC TCAGTTTTCA ACGCTGTAAA TGGAAATAAA TGAGAGAAGA AAGTACAGCC 000720 000721 CGTGTGACAA GTGCAGCAAG CAATGCAACT TCCTTGGGAC CTACCCTTTG TGGTCCCTTG CTTTAAAAGT ATAGATTCAC 000800 000801 ATTTAGTTAG ACCTGTTTCT TCCTCGCATG CAATTTCACC AGTCTTTTCC CAGACTTCTG TACTCAACAG AGGAAGTTCC 000880 000881 TTCCTGGGAG ACCATAGCTG TTTGTATGTA AAGAGTTGCG AAAAAACAAA AGCAAAACAA AAAACTCCAA CACCTCTCTG 000960 000961 TCACAGAAGT ATTGAATTAT ATAGACTGGA AAAATGGAAG TATCCAAGAA AACGCGTGTG GTAAGAAAAT GGCTAAGGTG 001040 001041 CAGGATTCTG TTTTGTGGCT CTGGTCTCAG AAATAGACCT CACATACACA TTATTCCTTA TCCCCTCTAT TATAATACTC 001120 001121 ACtttttttt ttttttaaga gacagggtag gccgggtgca gtggctcatg cctgtaatcc cagcattttg ggaggccaag 001200 001201 gcaggaggat cacctgaggt cgggagtttg tgaccagcct gaccaacatg gagaaactcc atctctacta aaaatacaaa 001280 001281 attagccagg tttggtggcg catgcctcta atcccagcta cttgggaggc tgaggcagga gaattgcttg aacccaggag 001360 001361 gcgcaggttg tggtgagccg agattgtgcc attgcactcc agcctgggca acaagagcga aactctgtct caaaaaaaaa 001440 001441 aaaaaaaaaa aaagagaggg tcttgctctg tcactcaggt tgtgctatca tagcttactg taaccttgaa ctcctggcct 001520 001521 taagcgatcc tcctgcttca acctcccaag tagctgggac tacaggcctg tgacagtgcc tggcCCAGGC ACTGACTTTC 001600 001601 TTATGTCATA TAGCAATGAC CACTAAGGGA AAGTCTATAC AAACTATAGA ATAGTTGTCA TTCTTTACCC AACCCGGGAC 001680 001681 ACAAGTTAAA AACCTAGTAT TCATTTTTTT TTTCCTGTAC CAAAACAATC ATCTTCCTTT ATTTTTCCTG GAGCGGGAAG 001760 001761 AGGAGAGTGG AGAAGAAGGG AAGAATGCAA AGTGTCACTT TGAACTTCTC GTTCACCACA CACGTGGGAG TCCACTCATG 001840 001841 TCAGCAGCCT CCGTGCACAG GCCCCAGGTG AAAGAAAGAA TGAGGTCTAG TTGGACCAGC TAACACTGCC TGCCTTGTGT 001920 001921 TTACGAAAGG CAGCTGCCTC TGTGGTGTGA TTTCAGGGGA GCCAGACAGG GCCGGGGCCA CGAACCTGCA TCCTGCATCC 002000 002001 TAAGCACCTA TTGCCATGCG TGAGGCTAAC TGGAAACTCA CTTGCTGGGT GCAGATAGCT TCCAAACTAT TGTGATGCTC 002080 002081 ATGCTTGACT TCCCAAGGAA CGTGTTTCAG GAAAGGCCAT TGCCCTCATT ATGGTCTTTG ATAAGCAGGA AGAAGTTTGT 002160 002161 TGTTCCTTTT TTTTCTTAAT GCCCTACTTC GTGCAACATA CATCCAATCA GTCATATCCT ATTGACGCTA CCCCTAAATA 002240 002241 TCTCTGGGCC TGGCCCGTGC TCAGGGCACT GCCTTCATTC AGttactgca cttgcctgct gcctgtgctc ctggtctcct 002320 002321 gcttggactc ccccaggcca gcagccacac tactgccaaa atccagtcga aaattaactt caggtaaagc acaattccaa 002400 002401 acctaacact gcccccctca aaagcctctc tgtagccttc agaataaaga ccatattatt tgacaagaca cataaagtcc 002480 002481 attgtaatct ggcaccaaac gacctttcca gcctcatctc ctgccattgt gtcccacaag ccctacatcc ctcccttgcc 002560 002561 aaaccagcct ccgctccttt ttgtcaaaca ACAGAGCtgt cctcttgttc attgttttat ctttagcatg gtgcccagca 002640 002641 cacaggcact gaaatacttg tgaattaata aTTACTTGCT CTTTTCATCA GGCTCTCATA AAATATTTTA GACTTGATCA 002720 002721 GAGCCTTGTT TTATATTTTA ATAGCttttt aatataaatg taattaatgt ttcttgtaca gaatttggaa gatgcaagaa 002800 002801 tggtgagaga agaacataag ccacctgaca tctcactagt caggaataga cctgtggata tttttatgta tttccttcta 002880 002881 gtgatctttc taAGGGACCG TTTCCAATCC GCATCTCCTC TGTCTGTGTG TAGGATTTAA GAATGCTGAC TGTGCAGGCT 002960 002961 GCTCTCCACG ATGCCCATGT GACAGCCTGC TGTCCTATTC TAGttcttgg ccggttcctc gtctgctgcc agccccctaa 003040 003041 attatggtgt ttccaggcat tctatcctca accctcttat tttctcattc tacatgcttt atctttgggt gttctcctcc 003120 003121 acgcccaggg cttcagatat cactatttgc tgatgactcc aaaatctgta acttctgagc tctgaccACA TTAACTCCTA 003200 003201 CACATGTCTC AGGTGCAACA AATTATACAT GTCCCAAGTC AGAGAGAACA TCTTTTCCAC AGCCTTGCAC TGTTCACTTC 003280 003281 ATTGATTAGC TGGGAAACTG GGAGGACTCA CAGACTGCCC CCTTTCCTGA GTCCTGGGGC CTCCCTGAAG CATGGGTGTT 003360 003361 GCTTGCAATT TTCCAGGCCC CTAAACTCAT AAAACATAGA CAGAATGAAT TTCTGTTCTT AGGCCCTTGA TGACATGTCA 003440 003441 CTGCAAACCA AAAATGTACA AATGAACCAA AACAGCCACA TGGTACTGAT ATACACAGTC AAGAAGTATC TTAGCCCTTT 003520 003521 GATGAGATGC ATATAGTAAT AAATCTCTGT GGAAACTCCA GCCTTTTTGG AAGCCTGGGT AAGAAAGTAg gctcagtggc 003600 003601 tcacgcctgt aatcccagca ctttgggagg ccgaagcggg tggatcatga ggtcaggaga tcgagaacat cctggctaac 003680 003681 acggtgaaaa cccgtctcta ctaaaaatac aaaaattagc cgggcgtggt ggtgggcgcc tgtagtccca gctactcggg 003760 003761 aagctgaggc aggagaacga catgaacccg ggaggtggag cttgcagtga gccgagatca caccactgca ctccagcctg 003840 003841 ggcgacagag ccagagcgag actccatctc aaaaaaaaaa aaaaaaaaaa aGAGTAACCT TTGTCATACT GAGGAAATCT 003920 003921 GACCAAACAC TTCAGTCTAA CGTGAAAAAA GTTGAAGGGT CTTTTATAGT GAAACTAGAG TCATCTCCTG GATGAAGCAT 004000 004001 GTTTGTATTT CACCTGTGGG ATGGAATATC CTAAAAGATC TGCCTGGCTG CCTCAGGACT CATTTCTTTT CAGGGGAGTC 004080 004081 GGGTGCAGAC AATATTACTT GAGCACAATA GTGCCGGATC TCTCCTTGAG TGGATCTTAA CTAAGGAAGA AATGTAAAGA 004160 004161 CACATTCAAA GTTGACCCCT TTCAAATGGG TTTTTAACTT AGTTTCCTAA AATTGAAACA AAGTTTCATA AAATGAtcat 004240 004241 tcaaataaaa tctgttgagt gctcaggaac atttcccagc actagggata cagcagtgaa ccaaatgaat gaaagtgcca 004320 004321 gccttctaag acgttttctt acagtcttgt aggTTGACAT GTTGATTTCC ACTGTGGCAT CCCAGTAATG GCACCGACAT 004400 004401 CATCTCCACC TGTAATCACA GCCTTCAGAA CTGTACATGC AACTTAGGAA TGTGTAACAT GAAGGCATAT AAATGAAAAC 004480 004481 CTAAGTATTT ATAGCTATGA TTTAATCAGG AGCCCCAGGT CTGCAAGCAG ATGCTCAGTT TTCTCCCCAG AATCACTGGG 004560 004561 ACCACTTCTG TCTTGGCCAC TGGAGCTCCC CTCCAAGGTG CTGCAATTCA GGAGGTTAGA AAGTCATGGA AAACGAGGGT 004640 004641 TCCACCCTTG CCAGAACAGT TGCCAATACA AAAGCCACAG ATTAACAGTC CTGAGTTGCA AAGAACATTA TTGTGAAGTC 004720 004721 CAAGTTGAAT AAACACACAG CCAAGTTAAA TTTTTTGCGG CAATAGAACA GCAATGGGAT TGAAAAAACC ATCAGTCAAA 004800 004801 GTTCAAAGGT CATTGGCCTC AAGTTGAAAA ATTCTTGAGC ATGTTTGACT GTTACTTTAT GTAATGGTTC CTTCCATTTT 004880 004881 ACAAGAAACT AGGAAGTGGG GGTCATTTTG TTGCAACTAT TTTCTGAAAA TCATGAGTTT ACATTGAGTA ATACATTGCT 004960 004961 CAGTTTTGGG TGATACTCAT TCTGCCCTGT TCTGAAGGGA AAACACATTC TCTAAAATTG CCTGGATTTC tgtgtgtgtc 005040 005041 tgtgtgtgtg tgtgtgtgtg tgtgtctatg tctgtgtgtg tgtgcatctc tgtgtgtttg tgtgtctgtg tgtgtgcgtg 005120 005121 tgtgtgtgcg tgcgtgcgtg tgtTTTTCCT TTCCCAAAGG AAGGCTTTCA ACTTTGAAAA CTTCATGAAG TGTTTTTTGG 005200 005201 CATAATTTCC CAAATGGCTG TGGAATATGT GAAATATTCC TTATTTCTCT ATGGTGACAA ACTATAAAGT AGTCCTTTTA 005280 005281 CCTTTAAAGA CAGAGGGACA TGGTGTCTAT AGCTTTGCCT TGACGTTCTG CAGAGCAATT ACTATAATAG TTTCAGGTAT 005360 005361 TGAAGATATT TTAAAGAATA AATTTCAAAT TTGTAACCTA AATTTAGGAG ACTACTTGGT TCACTGGTCA TCTGTATATT 005440 005441 TGAAGaaatt tttaatattg ttatatttgt tttcttattt taaaatattt aattGTCAgc caggcatggt ggctcattcc 005520 005521 tgtaatctca gagctttgga aggtcaaggc aggaggatca cttgaggaca ggatttcaaa accagcctgg gaaatatagc 005600 005601 gagactgtct acacacacac acacaaaaaa aaaaaaaaaa ttaagagggt gtggtagcgt gcacctatag tcctagctac 005680 005681 ttgaaaggct gaggcaggag gttcccttga gaccaggtgt tcaagtctgc agtgagctat aatcatgcca ctgaactcca 005760 005761 gactgggtga cagaaggagg ccctatctgt aaataaataa ataaagaaaT TTATTTAAAG TAAGTAAAAA TAAAATAtgt 005840 005841 aattgtcaaa taaagattga acatattcaa agtaaacaac atgattattt gatacacata tattgtgtaa caattaccac 005920 005921 aaatgaatta aaacatccgc cactcgccct gctatgatca gctcccacaa catattgata ttatacataa ctaaacgttt 006000 006001 tgtatctttt gactaacatc tctccattcc acttccagtc actggcaacc accattttac tttctgcttc tctgagttta 006080 006081 acatttatag attccacatg taagtgaaac cacacaatat ttgtctttct gtgtctggct tattttactt agcataatgt 006160 006161 ctcccaagtt catccatgtt gccaatgaga taggatttct ttctcttttt atggttgaat aatattccat tgtatatatg 006240 006241 aaccacagtt tctttatctg ttcatctatt ggtggacact tgggctgttt ccacgtcttg gctattggaa ataacgccgc 006320 006321 agtgaatata agggagcaga catctcctca ggatattgat tttatttcct tttgatatgt acccagaagt gggattgctg 006400 006401 gatcgcatgg tggttccatt tggtagtctc attctaatgg taattccatt ttaatttttg gaggcacctc catactgttt 006480 006481 tccataatgg ctgcaacagt ctatattccc accaagtgtg caaaggttcc cttttatagc ccttctaaca ggagggagat 006560 006561 atatctcatt gtgattttga tttgcatttc tctgatgatt catgatgtcg agcacttttg catacacctg ttggccattt 006640 006641 gtatgtcttg tatggaaaat gtctattcag gttctttgct catttGCTGC AACTTTCACC ATTTCTCTGT AAGCCTTTGG 006720 006721 TCTCAGCGTA TGAAGCATGA TGATGTTCAG TGTGTTCTCT TCCTTCCCAA ACTTCATAGC ATTCTGAATA ATACACCTTT 006800 006801 ATTCTATTTG AAAATGTTTG GAAATTCGCC AGTCAGAAAG ACAGCAGAGT GTCATAAAAC AAAGGATTGA GAACATTTAG 006880 006881 AAATGTTCTC ACTTCCTTAA AAAACTTTAT CTCTGCTAAA TACCAAATGT GCATGGCAAT TCACGTACAC AGCTCTTGGC 006960 006961 GCATTCTCCT TAACCTTTGA TGCATCTTGG CGTCATTTAC CCTCCatgtt tattgagcac tgggatgctc caggcactct 007040 007041 gagagctgct gtgaagaaag caagagccag acaagacccc tgcgcccatg cccctgatgc tctagtgaag gtgaaggcaa 007120 007121 cagacaaata aacaagcaaa ccaacacaat agtcacaggt ttgtctcagt gctctgaagg aaatcaacag gcgctttggt 007200 007201 agaaaatgct gtgtcaacta ggtggtcaag aagcttgctc tgaggaaatg agatttaagc caagacgtga agaaTGATGT 007280 007281 AGTCCtgtat tagtttgtca aggctgccat aagaaagtcc cacaactgag tggcctaaat aaccaaaatt tattgtctta 007360 007361 tagttatgga ggctggaagt ctgagaacaa ggcatctaca gagttggttc cttctcaagg ctgtggggga gacttccaca 007440 007441 cctcctggct tctggtggtt tgccagcatg cttgggcatt ctttggcttg taaatgcatc accccaatct ctgtcttgat 007520 007521 ggttatgtgg tgttctccct gcacatgtgt ctgtgtcca |
Predicted Small Protein
Name | NONHSAT099544_smProtein_2942:3184 |
Length | 81 |
Molecular weight | 9032.7338 |
Aromaticity | 0.125 |
Instability index | 46.157625 |
Isoelectric point | 8.35821533203 |
Runs | 13 |
Runs residual | 0.0236842105263 |
Runs probability | 0.0587487940429 |
Amino acid sequence | MLTVQAALHDAHVTACCPILVLGRFLVCCQPPKLWCFQAFYPQPSYFLILHALSLGVLLH AQGFRYHYLLMTPKSVTSEL |
Secondary structure | LLHHHHHHHHLLLLLLLLHHHLLLEEEEELLLLLEEELLLLLLLHHHHHHHHHHHHHHHH HHLLLEEEEEELLLLLLLLL |
PRMN | LLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLHHHHHHHHHHHHHHHHHHHH LLLLLLLLLLLLLLLLLLLL |
PiMo | ooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiTTTTTTTTTTTTTTTTTTTT oooooooooooooooooooo |