NONHSAT099544

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT099544

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

7559 nt

Genomic location

chr4+:185395989..185403547

Exon number

1

Exons

185395989..185403547

Genome context

Sequence
000001 AACAAGCAGC GGCTCGTGAG TCCGCGGCTC GCACCCAGGG GCGCCCGCAC GTGCGGCTAG AACGTCCGAG TCGGGGTccg 000080
000081 gggcgggggg cgcaggcccg cggcggTAGG GGAGGAGAGC GGGCACCCGA GTCTCCATCC TCAGGGTGGC CTGAAGGTTC 000160
000161 CAGGAGGGCG TCCGGCGAAG GCACGGGGCT GCGACCATCC AGTTAGCAGG GCTGGTGTGA CTGTTGAGAG TAAATGAAAA 000240
000241 TTCGTTTTGT GACACCGACC ACCTCCAAGG AATGAAAGGA GCAGTCAGCC GAAACGACAG CATTACTTGC GTCCTTACCT 000320
000321 AATTGGAACC TTATCCGTGG CTGAGGGTGC CACCATTGGA GGGGCCGCCG CCCCCTCTGA CACCACCTGG CGCTCCGCTC 000400
000401 CATTTAGGAG CTAGAACGAA AAGGAGGCCC ATCCCCCAGT AAGTCACAGC CCACGCCAAG ATGAGTTCTG GAGCCTGTGC 000480
000481 GACCGAAGTT TCTTCACCGC AGGGCGAGGT GGACAAGGGT GTGAGTTACT TTGACTTCAA GACGTCTCAG TGGCGGCTGG 000560
000561 TTCTGGAGAG AGGCTTTATG CTGGAGCACT TCCAGCAAAG TTCGGCTGGG GCCTCCTTAA CTCACTGGCT GGTCACCCTT 000640
000641 GGCCTCGGTT TTCAACCAAA GCCTAAGGCC TCAGTTTTCA ACGCTGTAAA TGGAAATAAA TGAGAGAAGA AAGTACAGCC 000720
000721 CGTGTGACAA GTGCAGCAAG CAATGCAACT TCCTTGGGAC CTACCCTTTG TGGTCCCTTG CTTTAAAAGT ATAGATTCAC 000800
000801 ATTTAGTTAG ACCTGTTTCT TCCTCGCATG CAATTTCACC AGTCTTTTCC CAGACTTCTG TACTCAACAG AGGAAGTTCC 000880
000881 TTCCTGGGAG ACCATAGCTG TTTGTATGTA AAGAGTTGCG AAAAAACAAA AGCAAAACAA AAAACTCCAA CACCTCTCTG 000960
000961 TCACAGAAGT ATTGAATTAT ATAGACTGGA AAAATGGAAG TATCCAAGAA AACGCGTGTG GTAAGAAAAT GGCTAAGGTG 001040
001041 CAGGATTCTG TTTTGTGGCT CTGGTCTCAG AAATAGACCT CACATACACA TTATTCCTTA TCCCCTCTAT TATAATACTC 001120
001121 ACtttttttt ttttttaaga gacagggtag gccgggtgca gtggctcatg cctgtaatcc cagcattttg ggaggccaag 001200
001201 gcaggaggat cacctgaggt cgggagtttg tgaccagcct gaccaacatg gagaaactcc atctctacta aaaatacaaa 001280
001281 attagccagg tttggtggcg catgcctcta atcccagcta cttgggaggc tgaggcagga gaattgcttg aacccaggag 001360
001361 gcgcaggttg tggtgagccg agattgtgcc attgcactcc agcctgggca acaagagcga aactctgtct caaaaaaaaa 001440
001441 aaaaaaaaaa aaagagaggg tcttgctctg tcactcaggt tgtgctatca tagcttactg taaccttgaa ctcctggcct 001520
001521 taagcgatcc tcctgcttca acctcccaag tagctgggac tacaggcctg tgacagtgcc tggcCCAGGC ACTGACTTTC 001600
001601 TTATGTCATA TAGCAATGAC CACTAAGGGA AAGTCTATAC AAACTATAGA ATAGTTGTCA TTCTTTACCC AACCCGGGAC 001680
001681 ACAAGTTAAA AACCTAGTAT TCATTTTTTT TTTCCTGTAC CAAAACAATC ATCTTCCTTT ATTTTTCCTG GAGCGGGAAG 001760
001761 AGGAGAGTGG AGAAGAAGGG AAGAATGCAA AGTGTCACTT TGAACTTCTC GTTCACCACA CACGTGGGAG TCCACTCATG 001840
001841 TCAGCAGCCT CCGTGCACAG GCCCCAGGTG AAAGAAAGAA TGAGGTCTAG TTGGACCAGC TAACACTGCC TGCCTTGTGT 001920
001921 TTACGAAAGG CAGCTGCCTC TGTGGTGTGA TTTCAGGGGA GCCAGACAGG GCCGGGGCCA CGAACCTGCA TCCTGCATCC 002000
002001 TAAGCACCTA TTGCCATGCG TGAGGCTAAC TGGAAACTCA CTTGCTGGGT GCAGATAGCT TCCAAACTAT TGTGATGCTC 002080
002081 ATGCTTGACT TCCCAAGGAA CGTGTTTCAG GAAAGGCCAT TGCCCTCATT ATGGTCTTTG ATAAGCAGGA AGAAGTTTGT 002160
002161 TGTTCCTTTT TTTTCTTAAT GCCCTACTTC GTGCAACATA CATCCAATCA GTCATATCCT ATTGACGCTA CCCCTAAATA 002240
002241 TCTCTGGGCC TGGCCCGTGC TCAGGGCACT GCCTTCATTC AGttactgca cttgcctgct gcctgtgctc ctggtctcct 002320
002321 gcttggactc ccccaggcca gcagccacac tactgccaaa atccagtcga aaattaactt caggtaaagc acaattccaa 002400
002401 acctaacact gcccccctca aaagcctctc tgtagccttc agaataaaga ccatattatt tgacaagaca cataaagtcc 002480
002481 attgtaatct ggcaccaaac gacctttcca gcctcatctc ctgccattgt gtcccacaag ccctacatcc ctcccttgcc 002560
002561 aaaccagcct ccgctccttt ttgtcaaaca ACAGAGCtgt cctcttgttc attgttttat ctttagcatg gtgcccagca 002640
002641 cacaggcact gaaatacttg tgaattaata aTTACTTGCT CTTTTCATCA GGCTCTCATA AAATATTTTA GACTTGATCA 002720
002721 GAGCCTTGTT TTATATTTTA ATAGCttttt aatataaatg taattaatgt ttcttgtaca gaatttggaa gatgcaagaa 002800
002801 tggtgagaga agaacataag ccacctgaca tctcactagt caggaataga cctgtggata tttttatgta tttccttcta 002880
002881 gtgatctttc taAGGGACCG TTTCCAATCC GCATCTCCTC TGTCTGTGTG TAGGATTTAA GAATGCTGAC TGTGCAGGCT 002960
002961 GCTCTCCACG ATGCCCATGT GACAGCCTGC TGTCCTATTC TAGttcttgg ccggttcctc gtctgctgcc agccccctaa 003040
003041 attatggtgt ttccaggcat tctatcctca accctcttat tttctcattc tacatgcttt atctttgggt gttctcctcc 003120
003121 acgcccaggg cttcagatat cactatttgc tgatgactcc aaaatctgta acttctgagc tctgaccACA TTAACTCCTA 003200
003201 CACATGTCTC AGGTGCAACA AATTATACAT GTCCCAAGTC AGAGAGAACA TCTTTTCCAC AGCCTTGCAC TGTTCACTTC 003280
003281 ATTGATTAGC TGGGAAACTG GGAGGACTCA CAGACTGCCC CCTTTCCTGA GTCCTGGGGC CTCCCTGAAG CATGGGTGTT 003360
003361 GCTTGCAATT TTCCAGGCCC CTAAACTCAT AAAACATAGA CAGAATGAAT TTCTGTTCTT AGGCCCTTGA TGACATGTCA 003440
003441 CTGCAAACCA AAAATGTACA AATGAACCAA AACAGCCACA TGGTACTGAT ATACACAGTC AAGAAGTATC TTAGCCCTTT 003520
003521 GATGAGATGC ATATAGTAAT AAATCTCTGT GGAAACTCCA GCCTTTTTGG AAGCCTGGGT AAGAAAGTAg gctcagtggc 003600
003601 tcacgcctgt aatcccagca ctttgggagg ccgaagcggg tggatcatga ggtcaggaga tcgagaacat cctggctaac 003680
003681 acggtgaaaa cccgtctcta ctaaaaatac aaaaattagc cgggcgtggt ggtgggcgcc tgtagtccca gctactcggg 003760
003761 aagctgaggc aggagaacga catgaacccg ggaggtggag cttgcagtga gccgagatca caccactgca ctccagcctg 003840
003841 ggcgacagag ccagagcgag actccatctc aaaaaaaaaa aaaaaaaaaa aGAGTAACCT TTGTCATACT GAGGAAATCT 003920
003921 GACCAAACAC TTCAGTCTAA CGTGAAAAAA GTTGAAGGGT CTTTTATAGT GAAACTAGAG TCATCTCCTG GATGAAGCAT 004000
004001 GTTTGTATTT CACCTGTGGG ATGGAATATC CTAAAAGATC TGCCTGGCTG CCTCAGGACT CATTTCTTTT CAGGGGAGTC 004080
004081 GGGTGCAGAC AATATTACTT GAGCACAATA GTGCCGGATC TCTCCTTGAG TGGATCTTAA CTAAGGAAGA AATGTAAAGA 004160
004161 CACATTCAAA GTTGACCCCT TTCAAATGGG TTTTTAACTT AGTTTCCTAA AATTGAAACA AAGTTTCATA AAATGAtcat 004240
004241 tcaaataaaa tctgttgagt gctcaggaac atttcccagc actagggata cagcagtgaa ccaaatgaat gaaagtgcca 004320
004321 gccttctaag acgttttctt acagtcttgt aggTTGACAT GTTGATTTCC ACTGTGGCAT CCCAGTAATG GCACCGACAT 004400
004401 CATCTCCACC TGTAATCACA GCCTTCAGAA CTGTACATGC AACTTAGGAA TGTGTAACAT GAAGGCATAT AAATGAAAAC 004480
004481 CTAAGTATTT ATAGCTATGA TTTAATCAGG AGCCCCAGGT CTGCAAGCAG ATGCTCAGTT TTCTCCCCAG AATCACTGGG 004560
004561 ACCACTTCTG TCTTGGCCAC TGGAGCTCCC CTCCAAGGTG CTGCAATTCA GGAGGTTAGA AAGTCATGGA AAACGAGGGT 004640
004641 TCCACCCTTG CCAGAACAGT TGCCAATACA AAAGCCACAG ATTAACAGTC CTGAGTTGCA AAGAACATTA TTGTGAAGTC 004720
004721 CAAGTTGAAT AAACACACAG CCAAGTTAAA TTTTTTGCGG CAATAGAACA GCAATGGGAT TGAAAAAACC ATCAGTCAAA 004800
004801 GTTCAAAGGT CATTGGCCTC AAGTTGAAAA ATTCTTGAGC ATGTTTGACT GTTACTTTAT GTAATGGTTC CTTCCATTTT 004880
004881 ACAAGAAACT AGGAAGTGGG GGTCATTTTG TTGCAACTAT TTTCTGAAAA TCATGAGTTT ACATTGAGTA ATACATTGCT 004960
004961 CAGTTTTGGG TGATACTCAT TCTGCCCTGT TCTGAAGGGA AAACACATTC TCTAAAATTG CCTGGATTTC tgtgtgtgtc 005040
005041 tgtgtgtgtg tgtgtgtgtg tgtgtctatg tctgtgtgtg tgtgcatctc tgtgtgtttg tgtgtctgtg tgtgtgcgtg 005120
005121 tgtgtgtgcg tgcgtgcgtg tgtTTTTCCT TTCCCAAAGG AAGGCTTTCA ACTTTGAAAA CTTCATGAAG TGTTTTTTGG 005200
005201 CATAATTTCC CAAATGGCTG TGGAATATGT GAAATATTCC TTATTTCTCT ATGGTGACAA ACTATAAAGT AGTCCTTTTA 005280
005281 CCTTTAAAGA CAGAGGGACA TGGTGTCTAT AGCTTTGCCT TGACGTTCTG CAGAGCAATT ACTATAATAG TTTCAGGTAT 005360
005361 TGAAGATATT TTAAAGAATA AATTTCAAAT TTGTAACCTA AATTTAGGAG ACTACTTGGT TCACTGGTCA TCTGTATATT 005440
005441 TGAAGaaatt tttaatattg ttatatttgt tttcttattt taaaatattt aattGTCAgc caggcatggt ggctcattcc 005520
005521 tgtaatctca gagctttgga aggtcaaggc aggaggatca cttgaggaca ggatttcaaa accagcctgg gaaatatagc 005600
005601 gagactgtct acacacacac acacaaaaaa aaaaaaaaaa ttaagagggt gtggtagcgt gcacctatag tcctagctac 005680
005681 ttgaaaggct gaggcaggag gttcccttga gaccaggtgt tcaagtctgc agtgagctat aatcatgcca ctgaactcca 005760
005761 gactgggtga cagaaggagg ccctatctgt aaataaataa ataaagaaaT TTATTTAAAG TAAGTAAAAA TAAAATAtgt 005840
005841 aattgtcaaa taaagattga acatattcaa agtaaacaac atgattattt gatacacata tattgtgtaa caattaccac 005920
005921 aaatgaatta aaacatccgc cactcgccct gctatgatca gctcccacaa catattgata ttatacataa ctaaacgttt 006000
006001 tgtatctttt gactaacatc tctccattcc acttccagtc actggcaacc accattttac tttctgcttc tctgagttta 006080
006081 acatttatag attccacatg taagtgaaac cacacaatat ttgtctttct gtgtctggct tattttactt agcataatgt 006160
006161 ctcccaagtt catccatgtt gccaatgaga taggatttct ttctcttttt atggttgaat aatattccat tgtatatatg 006240
006241 aaccacagtt tctttatctg ttcatctatt ggtggacact tgggctgttt ccacgtcttg gctattggaa ataacgccgc 006320
006321 agtgaatata agggagcaga catctcctca ggatattgat tttatttcct tttgatatgt acccagaagt gggattgctg 006400
006401 gatcgcatgg tggttccatt tggtagtctc attctaatgg taattccatt ttaatttttg gaggcacctc catactgttt 006480
006481 tccataatgg ctgcaacagt ctatattccc accaagtgtg caaaggttcc cttttatagc ccttctaaca ggagggagat 006560
006561 atatctcatt gtgattttga tttgcatttc tctgatgatt catgatgtcg agcacttttg catacacctg ttggccattt 006640
006641 gtatgtcttg tatggaaaat gtctattcag gttctttgct catttGCTGC AACTTTCACC ATTTCTCTGT AAGCCTTTGG 006720
006721 TCTCAGCGTA TGAAGCATGA TGATGTTCAG TGTGTTCTCT TCCTTCCCAA ACTTCATAGC ATTCTGAATA ATACACCTTT 006800
006801 ATTCTATTTG AAAATGTTTG GAAATTCGCC AGTCAGAAAG ACAGCAGAGT GTCATAAAAC AAAGGATTGA GAACATTTAG 006880
006881 AAATGTTCTC ACTTCCTTAA AAAACTTTAT CTCTGCTAAA TACCAAATGT GCATGGCAAT TCACGTACAC AGCTCTTGGC 006960
006961 GCATTCTCCT TAACCTTTGA TGCATCTTGG CGTCATTTAC CCTCCatgtt tattgagcac tgggatgctc caggcactct 007040
007041 gagagctgct gtgaagaaag caagagccag acaagacccc tgcgcccatg cccctgatgc tctagtgaag gtgaaggcaa 007120
007121 cagacaaata aacaagcaaa ccaacacaat agtcacaggt ttgtctcagt gctctgaagg aaatcaacag gcgctttggt 007200
007201 agaaaatgct gtgtcaacta ggtggtcaag aagcttgctc tgaggaaatg agatttaagc caagacgtga agaaTGATGT 007280
007281 AGTCCtgtat tagtttgtca aggctgccat aagaaagtcc cacaactgag tggcctaaat aaccaaaatt tattgtctta 007360
007361 tagttatgga ggctggaagt ctgagaacaa ggcatctaca gagttggttc cttctcaagg ctgtggggga gacttccaca 007440
007441 cctcctggct tctggtggtt tgccagcatg cttgggcatt ctttggcttg taaatgcatc accccaatct ctgtcttgat 007520
007521 ggttatgtgg tgttctccct gcacatgtgt ctgtgtcca
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Predicted Small Protein

Name NONHSAT099544_smProtein_2942:3184
Length 81
Molecular weight 9032.7338
Aromaticity 0.125
Instability index 46.157625
Isoelectric point 8.35821533203
Runs 13
Runs residual 0.0236842105263
Runs probability 0.0587487940429
Amino acid sequence MLTVQAALHDAHVTACCPILVLGRFLVCCQPPKLWCFQAFYPQPSYFLILHALSLGVLLH
AQGFRYHYLLMTPKSVTSEL
Secondary structure LLHHHHHHHHLLLLLLLLHHHLLLEEEEELLLLLEEELLLLLLLHHHHHHHHHHHHHHHH
HHLLLEEEEEELLLLLLLLL
PRMN LLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLHHHHHHHHHHHHHHHHHHHH
LLLLLLLLLLLLLLLLLLLL
PiMo ooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiTTTTTTTTTTTTTTTTTTTT
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