NONHSAT099658

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT099658

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1721 nt

Genomic location

chr4-:187337280..187422212

Exon number

7

Exons

187337280..187337490,187344883..187344986,187345244..187345390,187347391..187348252,187352772..187352922,187353299..187353392,187421999..187422212

Genome context

Sequence
000001 GTTACCTTCT CAACATGGCG AGCTTGCTGG ACGTCACGTC GCCTTCGCCT TTTCCGCTGC GGACTCTGCT CACCGACCTC 000080
000081 CTCAGTAGAG CCGGCCCTGC TCACTACCGC GCCCACGTGT CCTGTTGTGC TTCATTCCCA CAGGCCGCAT AAGAAGTGGG 000160
000161 TGCCGAGGCT CCCTTCCCAC TGCCATTCCA CTGGCCCAGA GGAAGCTTCT GTTGTGTTCA GATGGGCAGG CACTCTTCCT 000240
000241 CGAGAAGTTA AGTAGCCGGA ATATCTAAAT GCCTCTCCTT GGCGATTACT CGATGAGCGC CTGTCCTTCC TCCACTCTTC 000320
000321 CAGCAGACCT GCCTTTTGGG GCTGATGGAA ATATGCATAT TAGATTATCT GCAGAAACTG GCTCAGCACT ACAAGGAGGC 000400
000401 TGCCAACATG AAGACACTGG ATGCGGAATC AGGAGGAGAT GTATACAGCT CAGTCTCCAA AGCCAGGACA AGCCAGCTCC 000480
000481 AACACACTAC TGGCTGAATC TCACCAATCG TTATAGTTTT GTTTTTTGTT TTTTTAAATG TATTTAAGCA TTTTTAGGTG 000560
000561 TTTTAAATTT TATGTGTGTA TTCTAGGAAT ATGTACTCAG ATTCTTTCAT TAGGCATGTG TTATTAACAA CATTCATCTT 000640
000641 CTTAAAGGCT GAACCAACTT TGCGCGTTTT ATCAACAGAT ATTCACTGAG CACCTAATAT TGCCAGGCTG TGCTCAAGGC 000720
000721 AGTGGGATTC ATCAGTGAAC AATACAGACA AAAATCACTG ACCTAAATGG AGCTTGAAGT TTATATCTAA ATCATTCAAA 000800
000801 GATTCTGTGG TGGAAAAGAA GTTAGAAATC TTTCAGCTGC AAAACATAAG CCAAAATACA ACTCACCTTT GGAATCAGAG 000880
000881 AACTTACAGG TTCATAAAAT TGCGAAGCCC AGATGTGCAC CTGAGGTGAG ACTTCGTCCA GCTTCTGTCT GTGTCACTAA 000960
000961 TCTTTCCTGC TTTCAGCGGC ATCCCTCGCA GGCCCGTGTT GTTCCCAACT GGTGTTCCCA CCTGGCGGCA AACTGGCGAC 001040
001041 TGTAGTTACA GATCTTCAAC ATCACACTCA GGAGAAGAAG GAGATTGCTT TTCAGGAGCT CCTGCAAGCC GGAGAATAAA 001120
001121 AGCTCTTATT TATTCAGAAG CCCTAAAACA TACCACCTTG GCTATAGACT ATTTGGACAT TTCTAAGCAA ATCTGTCTGC 001200
001201 AAAGGTGCTG AGCTGTGTTG ATCAACTGAA GCCCGTGACG TCTCATCCTT GCAGTTGGAG CAAATCTCAA AGGCAAAGCC 001280
001281 AGTGTTAAGG AGAGGGAAAT CAGACTTCAT CTTTTGATGG GAGAAGAAAA GAGTTTGCAA CTGTCTCTAT TCTGCCACTG 001360
001361 GCAGAGAATC CATAGGTTTG CTAAGGATAC AGAGCCACAT TGAAAAGATA AACCTTGCTA TGCTGGAGAT TACTTAGGTG 001440
001441 GGCCAGGATT TCTTGAAACC AAAACTTTAC TGAATCACCT CTTCACCATC TGTATGCCGT GCATTTGCTG AGAGATAAAA 001520
001521 ACATTCCTGT GAAAGATGCC CTTCCCTGCA CCGGGAGAAA AGAAGCATTC TGCGACCAGG AGCCATAGCG AAGATAATTC 001600
001601 TGTAGAAACA GACCGTGGTA AAATAATGCC TATCTTCCTG CAGCCTCCCC ACGTAATTTA GTTACTTTTC CACAGCTGCT 001680
001681 TCTTTTTGCT CAACCTAATA TCAAAGCAGT TAGGTATTGC C
[back to top]

Predicted Small Protein

Name NONHSAT099658_smProtein_344:496
Length 51
Molecular weight 5532.1576
Aromaticity 0.06
Instability index 46.944
Isoelectric point 6.00213623047
Runs 7
Runs residual 0.0246783625731
Runs probability 0.0264087617029
Amino acid sequence MEICILDYLQKLAQHYKEAANMKTLDAESGGDVYSSVSKARTSQLQHTTG
Secondary structure LEEEHHHHHHHHHHHHHHHHHLLLLLLLLLLLEEEHHHHHHHHHHHHLLL
PRMN -
PiMo -