NONHSAT099676
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT099676 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2080 nt |
Genomic location |
chr4+:187812060..187814139 |
Exon number |
1 |
Exons |
187812060..187814139 |
Genome context |
|
Sequence |
000001 aaaagcaggc tgctccgcgc tagcactagc aagttgctag agtggcctgc cacagtgtaa gttttgttct ttagctcttt 000080
000081 gcaataaatc ttgctactgc ccactctttg ggtttacact gcatttatga gctgtaacac tcatggtgaa gatttacagg 000160 000161 ttcagtcctg aagccagcga gacaaagaac ccactgggaa gaacaaacaa ctccagacgc cccaacttaa gagctgttaa 000240 000241 cacccgaaga tctgcagctt cacttttgag ccagcgagac cacgaaccca ccagaaggaa gaaactctga acaggctgga 000320 000321 acgtcagaag gaacaaactc aggacatgcc acctttaaga actgtaacac tcactgtgag ggtctgcggc ttcattcttg 000400 000401 aaggctgtga gaccaagaac ccaccaattt cggacacaCT GGGACCACCC TCGCTGACTG GAGgtaatat tggtttttgc 000480 000481 tgttgaaatt aatgacaaaa agcgtgatta cctttgcacc aacctaaATG TAAGTAGCCG AGGGCCAGTG TGGTGGTGCT 000560 000561 GTGATGCCTT CTATGTCACA GGCTGTTTTT GTTTTTAATT TCTCCATCCT TATTAGTGCT TTTCCTTAAG GTCACCTCAG 000640 000641 GTCCACAGAC AAGGCTGCTG AGCCTCCAGC TATCCTGCCC ATGTTCTATT TAAGAAAGAA GGGACAGGAG CAAAGATGTT 000720 000721 TTCCAGCAAT CTCATCCAAT GCATTTGCTG ACATTTCACT GGCCACCCCA TCAGGAAGGA AAGCCAGACA TTTTTTTTCT 000800 000801 GCACCTAGAA ATTTACAGGT TTTATTAGTT AAGAATATGG TTTAGTAGAC TTTGGGTAGG AAACTAGCAG TCGCTGATGT 000880 000881 GTGAGGGATT CTAAAAATAA GCTTGGACTT TTAAAAACAT GTCTGATATG TTTGTGCCCT GTAGATCCAT GTCACTTGGC 000960 000961 AAAGTTCCTC CAgagttatc tagaattttt cctttatttc aatatctcat caattgctcc cgatcagttg ccaaaccttg 001040 001041 ccagtttcaa gtcccagaat gtaaactaaa tctgtttcct cctcttcatt cctgatacca cttccctagt tcaggccctg 001120 001121 ctgttcctcg ctaggtcgct ggcaccacct cttgactgtg tccttTGAGT AGGGAGAGTA AAGCATGAAC GGTGCCAGCT 001200 001201 CTACAGCTGG AGCTTGGCTT TTCTTGGGGG GGGGGGGTAA ATAAATTAAA CAGAAAATGC TGGTAGTTCC TGTGGtgtat 001280 001281 ctgagctatc tgtttaaata gctgattcgt tcatcattag gtgtccaagg acagtgactt gccttattct gctcttattc 001360 001361 tccagcactt gAGGCAATCA TTCCCAGATA GTGGAACCTC GAATGGCAGA CACTGTGGTT CTCCTGCGGG GCTGAGAACT 001440 001441 GTGAGGAGCA GAGCAGACTT CATGGAGCTC CACAAGTCAC ATACACAGGC GGCTGCTGGC TATTTCCGCT TTCTCATCTG 001520 001521 GAATTGGCAG CGGACTAAGT GGGCCCTACT TAttaggttg gtgcaaaagt aatcgcgatt cttgccatta aaagtaatgg 001600 001601 caaaagctgc gattactttt gcaccaatct TACTATATAT ATATTATTTT TTCAAATCTC AGTTTTATTC TCATTCCAGC 001680 001681 ATCCTAATGC TTTCCCTTTG GATTTTTTTT TCTAATCTTG AGAAGTTTGT GTTTTCAGTG TAGTAATAAC AATAATAGTG 001760 001761 TTCTTAGCAC ACGCGTTACg ccaagggctt ttaaaagata cttttcataa accaactcac ttaattctca caacaacttt 001840 001841 tgaagtagtc cactttctaa tcctcatttt acagataagg aaactgaggc acacaaggtc agctaacctg cccgaggtct 001920 001921 ctagctagtg actggaagag gtgttctctg gatattattt gaatctcagt ctcgctATAT TTCTTCGTCA TGACTGTAAC 002000 002001 TTTCCCCCTG TATTTCTAAA TATTTtaatc tcttgatcat atagcatacg ttgatttaat aaatcacttt tacatgcatt 002080 |
Predicted Small Protein
Name | NONHSAT099676_smProtein_680:844 |
Length | 55 |
Molecular weight | 6142.1484 |
Aromaticity | 0.111111111111 |
Instability index | 47.8835185185 |
Isoelectric point | 11.0051879883 |
Runs | 11 |
Runs residual | 0.0410117434508 |
Runs probability | 0.0176004881887 |
Amino acid sequence | MFYLRKKGQEQRCFPAISSNAFADISLATPSGRKARHFFSAPRNLQVLLVKNMV |
Secondary structure | LEEEELLLLLLLLLLLLLLLHHHLHHHLLLLLLLLHHHLLLLHHHHHHHHHHLL |
PRMN | - |
PiMo | - |