NONHSAT100517
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT100517 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3861 nt |
Genomic location |
chr5-:12653170..12737969 |
Exon number |
6 |
Exons |
12653170..12654688,12657511..12658227,12659546..12660157,12663441..12664022,12723669..12723939,12737810..12737969 |
Genome context |
|
Sequence |
000001 TTTAGGGACA AGAATCAGAT TCAGAAATCT CTAGATAATA AAACTGAAAT CATTATTATT TTGTATAAAT ATATCTACAT 000080
000081 TACTTGCTTA TTTAATAAAG GAATACATTT TTAATTTTCT AGGCTATTAT ACATGAAATG TTGCTTTGGC TTTTGCTTTA 000160 000161 AAAAAAAAAA AGTATTTGGT AACATGTGGA CATTTACTAA GCAAATGTGA TAGCTTAAGA TTGAGGGTAG CCACCTGTAA 000240 000241 TCCCAGCACT TTGGGAGGCC GACACAGCCA GATCACGAGG TCAGGAGTTC AAGACCAGCC TGACCAACAT GGTGAAACCC 000320 000321 CGTCTCTACT AAAAATTAAA AAACAAACAA AAAAAACGAA AGAAAAGAAA ATTAGCCGGG TGTGGTGGCA GGCACCTGTA 000400 000401 ATCCCAGCTA CTCGGGAGGC TGAGGCAGGA GATATAATTC CTCAATTTAG CCTTCCCACC TCAATACAGT CTGATAACAG 000480 000481 ACGAGCCTTT ATTAGTCAAA TCAGCCAAGC AGTTTTTCAG GCTCTTAGTA TTCAGTGAAA CCTTTATATC CCTTACGGTC 000560 000561 CTCCATCTTC AAGAAAAGTA GAATGGACTA AAGGTCTTTT AAAAACACAC CTTACCAAGC TCAGCCACCA ACTTAAAAAG 000640 000641 GACTGGACAA TACTTTTACC ACTTTCCCTT CTCAGAATTC AGGCCTGTCC TCGGAATGCT ACAGGGTACA GCCCATTTAA 000720 000721 GCTGCTGTAT AGACATAACT TGGCCCATGA TAGCTAGTAT TCAGTTCTTC CTTTTATGCA CAACCACAGC CAGCAGGAAG 000800 000801 CTACCAGAGA ATATGCACCA GTGAAATAAG GTTGTAAATA AAAAAGATAT GCAATCCATG AAACAGAACA TCCAGCCAAG 000880 000881 GATCATAACA GCAAATGCCA GCTCTGGTGA GCACGTTATA TTGAAAAGGG TGTGACTGTG GTGAAAGACT TGCCACAAAT 000960 000961 CATGAAACAA AACCAACCAG CACTGACAGA TCATTTAAAA TGTTTAAATA CTTCTTTGTT TGACATTTAA AATGTTAGTC 001040 001041 ACGTTTCTGC AATTTTACCG CCTGAAAATA TGTTCACTGC AAAATTTTGG CATAACCAAA AGCACATCTG GAAGTTACAT 001120 001121 TTCTCAATAA GCTAAAAATA GGATTTAGGG TTAACCTGAA GTGTGTCAGC AATTCTCTGA GAAGGGTGGA TTAGAGTGCT 001200 001201 CCTAAATAAT GCTGAAGTGT TTACAATTCA AACACACCTG AGGCATCTCT TCACATCCTG TTTTCCTGTA ACTCTTGTGA 001280 001281 TCTCCTGGGC CCTTGTGCGT CACCTGGGTT GGAGGATTAT CCATCCGCTC TTTCTAAAAC ATGCTCTAAA AAATGTCTTA 001360 001361 GGAAAAACAC TATCTAAAGT CGTTTATAAG CTATTCAAAT TTTTAGTAAA ATATCAATGA AAAGACTTTC TAAATGCCTG 001440 001441 CCACATGACA CCTTCGTGTA CCAAAACCTA TCAAAATTAC ATCTTAAAGT CATTTTTTGT TTTCACTGAC AGGACCATAT 001520 001521 TTCTCTTGCA GTTGTGTAGT TTGCAATGCC AGATGTAGGG ATGTCAATAT TTAATGGATA AAAATATATT TTATAAAGGA 001600 001601 GCCCACTGGG ATCACTTCTA AAGGCAAGAG GGGAATAACA GACAATGGGG CGTGCTTGAG GCTAGAGTGT GGGAGGAGAG 001680 001681 AGGGGATCCA AAAAATTAAC TATTGGGTAC TAGGCTTAGT ACGAGGGTGA CAAAATAATC TGTAGAACAA ACCCCCATGC 001760 001761 ACGAGTTTAC CTATATAACA CACCTGCACA TATTGCCCTG AACCTAAAAT AAAATTTTAA AAAAATAAAT ACTCTATAGT 001840 001841 AAAATCAAAG ATAACTATAA ACATAATATT TTGGTAAATG AGTTAAATTA CTGAATAGTC TAGTGTTTAG CAAAAATTTA 001920 001921 CAAAAACTAT ATTTTCCACT TTGACTTTAA GGATAATTTA GGAGATTACA TATGTTGCTT ATTACTGACA GCAAGAGAGA 002000 002001 TTATTATTTT GAGATTCTAA TCTTTAAGTA TTCTTATTTG TAGAAAAGTA TTAAAGGTAA TAATAAAATA AAATAATTTA 002080 002081 TTTAAAGGAA TTTTTAGTAC GTATTTGCAA AGTGAGGTAT CTCTTTACAA ACAGTTACTG TACTAAGTTG TGTATGTCTA 002160 002161 TGTTTACATT TGTAGGTCTT GTTTTTCTAA GGCTATAATG AGTATAGTTA ATCGATAATA TTACTTTTGC TTAAAAAGTA 002240 002241 AGTTAAGTCA TAAAGATATT TAAATGTTTG GAAAACATTC TTATGCATGT ATCTACACTG TTCTCTTTTC CTGTGCTCTT 002320 002321 CATTTCTTTA TGGAAATCTG AATTTTATAT GGATAGATTT TCAATGTCAA GTGTTGATCA AGAAACAAGT CACCAGATTA 002400 002401 TACTTTAAAT ACCACAGGTT CAATGTAAAT TTAATAAAAA CACTTGTATA TAAGATATAC GTATCTATTA TTAATGAATA 002480 002481 TATAAGGAAT AGAATTTAAT ATTAACAACA TTTAGAAATA AACAGCCTAA GTTAAGAATA GTGATGCTTG GGAGAGTGTG 002560 002561 AAAGGGAGTG GAACAGAATG TGGGAAGAAT TTTTAAAACT ATTTTGACTG TGTCTGTAAA ATTTGTAATT TTTATTAAAG 002640 002641 CAGATTTAGT TAAACATGTT AAATTTTAAT GTTATTTTTA ATTCTAGTTA GAATATACAT GAGTGTTTGT TATAATTTCA 002720 002721 CCCTCACTAC GGGGAATTAA AACTTTTCTC AAATTAACAT GAAAAAGAAC AAATGCACAC ATCTCAGCAG AATCAGAAAA 002800 002801 AAAACTAAAG ATAAAAGTAA GGTATCATCC TTAGGATCAA AAGCAACAGC TTTGCAAATG TGCACAGAAT GAGATATGCT 002880 002881 ATAATTATTC ATCACCTCTT TCTCACAATG TAACAACTAT TTAAGAAGAA TGGTTTAGTT ATTTTAAAAG AGTGTTTTCG 002960 002961 GGTTTTTTTT CTGCCCAAAA AAAAAAAGTA CTATTACCTT TTTTTCCTGG GTTTACTTGG TATATAAAAT TCTTTTTAAA 003040 003041 ATTTTATTTT TCCTTAAGTT ATTGGTATAC AGGTGATATT TGGTTACATG AGTAACTTCT TTAGTGGAGA TCTGTGAGAT 003120 003121 CCTGGTGCAC CCATCACCTG ACCGGTATAC ACTGAACCAT ACTTGTTGAC TTTTATGCCT CGCCCCCCCT CCCACTCTTC 003200 003201 CCCAAAGTAT ATTGTATCAT TCTTATGCCT TTGGGTCCTC ATAGCTTAAG TCTCATATGT TAGAGAGAAC ATACAATGTT 003280 003281 TGCTTTTCCA TTACTGAGTT ATTTCACTTA GAATAATAGT CTCTAATCTC ATCCAGGTCA TTGTAAATGC TGTTAGTTCA 003360 003361 TACCTTTTTA TGGCTGAGTA GTATTCCATC ATATATATAT ATCACAGTTT TTTTATCCAC TTGTTGATCA ATGGGCATTG 003440 003441 GAGTTGGTTC CACGATTTTG CTATTGTGAA TTGTGCTGCT ATAAACATGT GTGTGCAAGT ATCTTTTTTG AATTACGACT 003520 003521 AAAAGAATGG TTTAACTATT TAAAAAGAAT GATTATCACC AAATGAATTT GGTGATACCA TCAAATGAAT TTGGTGATAA 003600 003601 TACATGACAT GATAATTATG ATAATAATTT TAAAGCAGAA ATCAGTCAAT ATTTTCAGAG AGAGATTATA CAAATGCAAT 003680 003681 TTAGACTATA ACAGTTTAGA CTTATATCTT AGAGCATGTT AACATGTGGG GAAAATGATC TCTTGTGTGG TTATTTAGAA 003760 003761 AGGGAAACTT TTAAAGAAGA AAGCATAAAT GTGGGCATAT TCTCATCTTT TACTTAATGT AATTAGAGTG AACATATTGA 003840 003841 AGCCACATAC TAGAATTTTA T |
Predicted Small Protein
Name | NONHSAT100517_smProtein_3584:3721 |
Length | 46 |
Molecular weight | 5444.5701 |
Aromaticity | 0.0888888888889 |
Instability index | 43.9755555556 |
Isoelectric point | 8.73785400391 |
Runs | 8 |
Runs residual | 0.0155303030303 |
Runs probability | 0.0442170111289 |
Amino acid sequence | MNLVIIHDMIIMIIILKQKSVNIFRERLYKCNLDYNSLDLYLRAC |
Secondary structure | LLEEEHHHHHHHHHHHHLLLHHHHHHHHHHHLLLLLHHHHHHHHL |
PRMN | LHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | i???????????????????????????????????????????? |