NONHSAT100701
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT100701 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2446 nt |
Genomic location |
chr5-:20468539..20470983 |
Exon number |
1 |
Exons |
20468539..20470983 |
Genome context |
|
Sequence |
000001 TAGAGTGATG TTCTTGAGCA GGAAAGCAGC AGGTCCCTAC TTGGAATAGC TTGGCGCATA CAGTGCTAAG TCCGGGGGTA 000080
000081 AGTAAGAGTT GTAATCTAGC TCATCATTAT TGCTGGAACT TGTAGTGTAG CAAAAAGCTG AGTCTTGTCA AAAGGAGGAG 000160 000161 AGACTTTTCC TTCCACAATG CTATTGCATA GAGACGGAAG CCCTGATGAG TGGGCTTTGA TAACTGCACA GGGGAAGGAG 000240 000241 TTCACCTTTA ATATACTAAC AGAAGTGAAG GTGATGTATG CAGGCATGGA TGTGAGGGCA GGTAACGGGG CTTTATTTCT 000320 000321 CAGCAAATTT GGAAACAAGA TCATTAGCTA AAAGTGAGTA TGGGGAAGAG ATGCTGCACA TTTCAAAAAA CAGAAAAGTT 000400 000401 ACAGAATAGA CATCCGGGAG AGTATGAAAG AGAAGGGAAT AAAGACACGA ATTACCTTAA AGATTAAAGA GGATTTAAAA 000480 000481 TGAGATCATG TAGCATGGTT GTGTGTTTTT CTCCATTCAT GTCACTGCTC AGCTTCAAGA CTTGATTAGT AAAAAGTCCA 000560 000561 ATTTAGAGTT ATGGCTTTGT CAAGTTGGGT GAGAAAATTA AAGAAGAGTG GTGTAGTTGA GGATGTATAT ACGGGAGTCA 000640 000641 TTAAAACACC TTACCATGGA ATGTATGCTT GGTTTTGATG GAAGAGAAAA ATATAAGGTT GTTGAGGGAA AGTGAAAATA 000720 000721 TTGTGAGATC AATACATGCA CTTCCCAGTG GCATGAGGGC TTATCACAGT AGGGCTGCCC GAGACAGTGA ACTACAAGCA 000800 000801 AGAAGTCAGG AAGTTGAGCT GCCAGAGTAT GATGCATGAA ATTGAGATGG TGGAGGAGTG GCTATTAAAG GTAATAGCAG 000880 000881 GATCTAGGTT ATGACTATCA GACTGAGTGT CTGGAGGAGT TTGCAAGACA AGTCCACAGT AGTTCAGGAA ACTGAGAGGC 000960 000961 CAAAATGTGG TTAGGATGTT TGCTGTCTCT GAGAATTGAA ACTATCAAAA TTCTGACAGC AAAAGGGATA GTGAGGCAGG 001040 001041 AGCTAAAAAT GCCACGAATT GAGGAGAGAC CTGGAGGTCA GTAAAGGATG CAGTAATGAG GGATCCTGAA TGATACCACT 001120 001121 AATAACAAGG GATTAATATT TCTGTACTGA GTGGAGAATA GACTGGAGGG AGCAATGAAG ACCAGGGAGC AAAAAAACTC 001200 001201 AGCCTACTTC CAGGCTTAGT GATAAGAGAA TTATAGAAAA AATAAAATAA AACAGGCCCC AAATCCTCTA CCACTTGGGA 001280 001281 GCACTGCAGG CAAAGCAAGA AGTATCCTCA AGGAAGATCG GGGTATCCGT TACAGCAAAC TTGTGAAGGG CACTTTGAGT 001360 001361 GAAAAGGTTG AAGAAAGAGA AATTTTCTGG CAATGAAACT TCATTTCAGC ACAGTATATA TCCAATAGTG GCAATCTCTA 001440 001441 GGGAATGAGG AAAGGCAGAA GCGAAGATAA AAGTTTCCTA TTTTTCACTT TAATTAAATG TTTTATTTTA GAAAAAATGC 001520 001521 TTTCTGCTCT AGTTTTTTAA ACATATTGAA TGTCTTTTGA ATGTCAATAC ACACAAAAAT ACGAACAGAA TAAATGAGTT 001600 001601 TACCCAGAAA AACATTCCGG AGCAGTAGTG CCAATGACTT GTGATATTTA TGGATTGTTC GCTATGTGCA ATTCAGACTG 001680 001681 GGTCTTGAGC AAAGTCCCTT GAAGTCTTTC TTCTCATCCT ATGTTCATTC TATTTAATGC CTTTCCTTTT TGGTTTGGTG 001760 001761 GTGATAATGA TTACTGTTTG GCACTTGCTG CCTTCCTGTT GCCACCATTA CCGTTACATA CTGTGTTGCA AAGAGGCTAG 001840 001841 AAAATGGTAG TGCTGAGCTG ACTTCAGCCA AGGACATAGG TAGTGCAGTG AAATAATGTC TTTTTAGATC AACTGATAAC 001920 001921 TAACATTTGT GAATTCTTTG CTCAGTAATC TAGCAGAAGT TTTAATGCAC CTCGATTAAT GTATTTTAAA TTTAGCCCTT 002000 002001 CACCTAATAT GTGTTATTAT CCTGATGTGT ATCCACTTTC CAGTTTTACT CTATTTTTAT ATGTTCCCTA CTTAACACAA 002080 002081 CCGTTCAATC AATGGTTTTG CTATATAATG GCATAGTAAA TTTAAGTTTC TGAATTATAT GACTCATCTA ACTTTGACAT 002160 002161 ATTTAGTCAG TGTAAGTTTG AAAAGCCAGT ATTCTATGAA ATCATGGTTT TACATGGACT CTAAATTATG TTCATGAAGG 002240 002241 TTGCTAGAAA ATACTTTACA AAGGAGAAAA TTTAACAGTT AATATTGGGA AATGTAGAAA AAGCTTTTGG GAAAAACTTT 002320 002321 AGAGTGATCT TGAAAATATG TAGATATTTA TCAGATTGTT TGGAATCTGT GGTATTCCAA GAGGATGGAG GAGCATATTT 002400 002401 AACGATGAGA AAGAAAACAT CATGATATAC TTAGGGAAAT CATTCT |
Predicted Small Protein
Name | NONHSAT100701_smProtein_677:838 |
Length | 54 |
Molecular weight | 6153.7906 |
Aromaticity | 0.0377358490566 |
Instability index | 104.628301887 |
Isoelectric point | 5.58526611328 |
Runs | 9 |
Runs residual | 0.00954901058444 |
Runs probability | 0.0395297258043 |
Amino acid sequence | MEEKNIRLLRESENIVRSIHALPSGMRAYHSRAARDSELQARSQEVELPEYDA |
Secondary structure | LLHHHHHHHHHHHHHHHHHHHLLLLLHHHHHHHHLLHHHHHLLLEEELLLLLL |
PRMN | - |
PiMo | - |