NONHSAT100777

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT100777

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

978 nt

Genomic location

chr5-:25413377..25423011

Exon number

3

Exons

25413377..25413953,25415684..25415911,25422839..25423011

Genome context

Sequence
000001 TAAAAATATT GCAGAAGGTA GATAATTCCA ACATTTGTGT TTTTTAGAAA TTACTTTTTT TCAAGAATGA GTTCATGTCC 000080
000081 TTTGCAGGGA CATGGATGAA GCTGGAAGGC ACCATTCTCA GCAAACTAAC ACAGGAACAG AAAACCAAAC ACCGCATGTT 000160
000161 TTCACTCATA AATAGGTGTC CGCATTTGGT ACAACGTTCG TCAAAGAGGA TGAGGTTACC GGGATTGTCA CTGATGTGTT 000240
000241 TAAATGACTG CGCCAGCCTC CAGAGAATAA GATCTGTATT CATTGATTCA TTTAACCAAT ATTCAGGTGA CTACCACATG 000320
000321 CAATACCACA CTCTTATCTA GGCAACTTGA GTCACTGAGC TCAGTCCAGA ATCTTGATGA CTGAATGGAA ACACCAAGGA 000400
000401 GAATACATGA AGCCGGGCAC AGTGGCTCAC ACCTGTAATC CCAGCACTTT GGAAGGCCGA GGCGGGCAGA TCACCTGAGG 000480
000481 TCAGGAGTTC AAGACCAGCC TGGGCAACAT GGAGAAACCC CGTCTCTACT AAAAATACAA AAATTAGCTG GGTGTGATGG 000560
000561 CACGAGCCTG TAATCCCAGC TACCTGGGAG GCTGAGGCAT GAAAATCTCT TGAACCTGGG AGGGGAGATC GCGCCACTGC 000640
000641 CCTCCAACTT GGGTGACAGA GTGAGGCTCC ATCTCAAAAA AAAGAGTACA TGAAAAGTTC CCAAATCATA AATCAAAAAA 000720
000721 AATTGTTTGA AAGTTTATTT ACAACCAACA TCTCATTTCC CCGTAAGTCT CCATTTCTTC TCATATGCAC TGCAGATAAC 000800
000801 AAAACCATTG TAAACTCTAT TTTTCTCCCC TTCTCACTGT GATGTTTCAT AAGTAAAACC TAGATTTTCC CAGTGCAGAC 000880
000881 CTCCATTTTA CTCTTGAAGA CATAGGTCTG GTAACTTGTG GCTAGGAAAA TGAGGAATAG AAAAATAAAC ATTTTGATGC 000960
000961 CTGATTGTTT GATATTTT
[back to top]

Predicted Small Protein

Name NONHSAT100777_smProtein_74:340
Length 89
Molecular weight 10326.004
Aromaticity 0.0909090909091
Instability index 43.7147727273
Isoelectric point 9.85150146484
Runs 12
Runs residual 0.005
Runs probability 0.0438673968086
Amino acid sequence MSFAGTWMKLEGTILSKLTQEQKTKHRMFSLINRCPHLVQRSSKRMRLPGLSLMCLNDCA
SLQRIRSVFIDSFNQYSGDYHMQYHTLI
Secondary structure LLLLLEEEHHHHHHHHHHHHHHHHHHHHHHHHLLLLHHHLLLLLLLLLLLLLHHHHLLHH
HHHHHHHHHHHHHHHLLLLLLLEEEEEL
PRMN -
PiMo -