NONHSAT100881
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT100881 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2332 nt |
Genomic location |
chr5+:31326782..31329252 |
Exon number |
2 |
Exons |
31326782..31326925,31327065..31329252 |
Genome context |
|
Sequence |
000001 CTTAAAAttt tttttttttt tttttttttt tttttgagac agaatctcgc tctgtcgccc aggctggaat gcagtggcgc 000080
000081 gatctctgct cactacaagc tccgcctccc gggttcacgc cattctcctg cctcagcgcc cccatgctgg gattacaggc 000160 000161 gtgagccacc gcgcccggcc TTAAAAATTG AATCTGTAGC TTAGGCCATC CAAATTTTAT AAATCCAAAT TAACTTTAGA 000240 000241 ATGTTTCTAT TACTTTCACT TTTACATATA TAAATTTTAA GTGTCCTGAT TGGCTGAACA ATATCTCACA TCAAATGCTT 000320 000321 TGCCTGGAAA TAGATATCCC ACTGGGGATA GTGGTGTGTA AACTATGACT TGGACAATTC TATATACTCA AGCACCATAA 000400 000401 AAAGTATGCA GTTGAAAAGA AAATCAAAGT TGATTCCTGG GTGCCAACTA AATATTCAAA TCAGGTACTC ATCCTTATCA 000480 000481 GCTAAATTCA TTTTCACCAG GAACAGACCA CCAAATAAAT TATTTTATCC TAATAACTAG TTTTGAAGCA GTGTAATTAC 000560 000561 TCTGGAAGAA GGCTCTAAAA AGTCATGATT CCCCCACTAT TTTGAAATGT ATCCTCTAAC AAGGATCATT ATAGTGTAAT 000640 000641 CTTAATTTTT ATGTTTTATC AAGATGAAAT CTTGTTTGAA TTGTGATATT ATAAAAGGGG ACTCAAAAAT CCAAGCAGTC 000720 000721 TACTGTGTTT AAATTAACAC CACAACCTTC CTTATCAGAT TATAAGAGTA GAAAAATTAA CACTTGGTGT GTGAATCTTC 000800 000801 AGGAAAATGA GCTATTTCAT AAGCTCAAAC AAGCAGCTTC CTTTTCCAGA GAATATAGAA TTATATTATG GTCTCCTTAA 000880 000881 ATGTTTAGTA GCTCTTATGG TCACAGCATT TTTAATCTCC CTATGGCATC TTTATGGAAT AATTTTCTAA AGGGTAATTC 000960 000961 TCTACTAAAA ATATCAGACC CCGACCATAT TTAATGTGGA GAGCAATACC CTCTTAGAAA GAAAATACAT TGACTCATAC 001040 001041 ACTTGTTAAA AGTTAATAAA GAAATAGCTC ATTTTTAAAG CCGGAAGTTT ATGGTCTCTG CATCGTCAAT TTAATTTAAG 001120 001121 CATTGCTGAG ACAATCTTTA ATCTACTCCC CTTTTTGTAA TACCTTATTT ATGGTGCATT TTCATTTTTA TTTGGGGGAA 001200 001201 ACGTTAGCCC AACAGAGCCG GCAGATGAAA GTGTTGAAAA GAGGTCAAAT GGAAACAAAG GCTCTTACCC GCTGTATTTC 001280 001281 AGACAGGACT GAGGCACTTA GCCGAGGAGC CACTGGGTTA TTAGATTAAT TTCAAAAGAG CTTTTACAAG TTGCTTAATT 001360 001361 CCtttttttt tttttttttt tttCAAAAAC CCATGAACCA CAAACTCAAA TTTCTCCTCA AATGGGGTTA ATCTGACAAA 001440 001441 CGAGGCATGG ACCCAGCCTT GTGGAAAAAG CATTCCACGC TAATGAGATC TTGGTCTTTC TTGTGAGGCT ACGTTATTTA 001520 001521 TGTAAATATG TCTGGAGGCA CCTTCTCTAA GCTTTTAGTT TTCTATGATC TATTAGTTTA GTGTTTATTA AAGAATCAAA 001600 001601 TGTATAGAAT TACCAGGCAT TCGTGGGGAA TGCTGTGTAG CAAATGTAAA ACTGACCTGC TCGGAAGAAA CGTAGGAACG 001680 001681 CTTCAAACCC ACTGTAATGT TTGGTTTGAG ATTATTTTCA TTGCTTTGAG AGTGAACTGC CTAAGAGTAG GCCTTATAAT 001760 001761 AAATGCTATG TGCGTCTTCA GTAGTTCCAA GCTAAAGCAA TTTGGCATTC TCCCACTGTG ATTTGTGACT TTTAAACCCA 001840 001841 CAAAATAAAA GCTTTTTGGT ATTGATTGTT TTTAATTAAA AATACTTCCA AGTATAAATT GAAACGGATG CCACCCTTGA 001920 001921 AGATTTACTG GCGGGAATGC TCACTCTTGT CGTTTTCCTC AGTATCGTTC ATGTCTTTGG CAACAAGAAC ACCTGATGAA 002000 002001 AGCAAGCAAT GCTCAGTTCC CATCAACATT TCTAGTTAGG GGGATTCTCA TAACCCCACA GTTTACCTGA GAAAGTTTTC 002080 002081 TGTGTTAGAA GAATGGGGTC GAGAGTATTA CCTTTTAGCT CAGTGTGGCC GGGCCTTTTG TTGCAGTCAA ATGGCAAATA 002160 002161 CGCACTCCTT GAAATGGCTT CTTTTATTTG GTTTTGTTTT CTTAGACTTA TAAATTTGAA AAGAATGCAA TTTAAAAAGT 002240 002241 GATTTCTCAC AAAGAGTAAA TATGCCTTTT GCAAATCAAT TTTTGTAACA AGTTATTTAT ATGATATTAC TTAATAAACT 002320 002321 GGTTTTTTTC TA |
Predicted Small Protein
Name | NONHSAT100881_smProtein_806:949 |
Length | 48 |
Molecular weight | 5501.5647 |
Aromaticity | 0.191489361702 |
Instability index | 75.7595744681 |
Isoelectric point | 6.50616455078 |
Runs | 5 |
Runs residual | 0.0598936170213 |
Runs probability | 0.0406111994346 |
Amino acid sequence | MSYFISSNKQLPFPENIELYYGLLKCLVALMVTAFLISLWHLYGIIF |
Secondary structure | LEEEELLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTToooo |