NONHSAT101028

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT101028

Source

NONCODE4.0

Same with

,

Classification

sense

Length

3317 nt

Genomic location

chr5-:36192987..36218359

Exon number

7

Exons

36192987..36195384,36197643..36197766,36200329..36200382,36201208..36201263,36207272..36207367,36211946..36212024,36217850..36218359

Genome context

Sequence
000001 TGAACACAAT ATTATTTTAA TTTAAGAATG CTTTCCTTTT TGTATAATAT TTTTTGCTGA GCAAAGCACA AGCTATATCT 000080
000081 AGCTCAGTAT CTTGGACTTT ATGGGTTCTT GATAGAGTTT GACTTAATTT AAGTTACTTG GGAGATTTTG TACAAGCACA 000160
000161 TTAGGTGTTT CCGTTATAAT TGAAAAGAGA ATAAATATTC AAATCTGTCA TTGATAAGGA AGCTATAGGC TTTAGGTGTT 000240
000241 TCTGATATAA TTTATTCATG GAATAACTGG TAACTAGTTT TTATTAACTA TTTAATTTGG TTAAATTATT ATAATGTCTA 000320
000321 CTCTTTAATT TATTCTATTT TAACATAATT TGCCTTTTCT TCATTTTTCT AAGGTGGTTG TGGAGGCAGA GAATCAGGTT 000400
000401 ATACCTTGAA GGGACTGGCA TAAACCCTGT ACCTGTGGAC CTTCACGAGC AGCAGCTAAG CTTGAATCAG CACAATAGAG 000480
000481 CCCTTAACAT TGAAAGAGCT CATGATGAAA GGTCTGAGGC TTCAGGACCC CAACTTCTGC CAGTGAGAGC ACTAAATGAA 000560
000561 GTCTTCATTG GGGAGAGTCT GTCATCCAGG GCTTCCTACT ATGAGATTTC AGTTGATGAT GGTCCATGGG AAAAACAGAA 000640
000641 GAGTTCAGGG CTCAATTTGT GTACTGGAAC AGGATCAAAG GCCTGGTCAT TCAATATTAA CAGGGTTGCA ACTCAGGCTG 000720
000721 TAGAAGATGT TTTAAATATT GCAAAACGAC AAGGAAATTT GAGTCTTCCA TTGAACAGAG AATTGGTAGA GAAAGTAACA 000800
000801 AATGAATATA ATGAATCACT GCTCTACAGT CCGGAAGAAC CAAAAATACT TTTCAGTATT CGAGAACCAA TAGCAAATAG 000880
000881 AGTTTTCTCA AGCAGTCGTC AGCGTTGTTT CTCCTCAAAG GTTTGTGTTC GTTCTCGTTG TTGGGATGCC TGTATGGTTG 000960
000961 TGGATGGAGG AACTTCTTTT GAGTTTAATG ATGGTGCAAT TGCTTCGATG ATGATCAATA AAGAAGATGA GCTTCGAACT 001040
001041 GTGCTTCTTG AACAGTGAAG GATTTCCTCA TGACAAATTT TGATTACTGG CGAGAATATT TTTACTTCAG AAACAGACTA 001120
001121 CCAGTCGTAA AGTGACATTT TTTGGTTATT GTTGAGACTG CTTGCCCGTG GGCTCAGAAG TGAGATTTGC ATTATTCTTC 001200
001201 TGTTGGATTC TGATAGAAAA AAAGACATTC ACTGTATAAG AAAATGGATG GACTGAACCA ATTAGAATTG ATACCAGTGA 001280
001281 AATTTTTATA TTGCTTACAA TTGGTAACCA AGAGTGCTGA TACCTTTTTA AATTTAGAGG GGCAGGCTTA AATAAAGGAC 001360
001361 TAAATATTTA GGATTTGAAA CTTAACTGTA TAAGTGTGTT TTCCTTCCCT TTCCTCCTAA TTGTGGGATT GTCAGAACTG 001440
001441 AACACATATC ATTTGATTAG TGCATATTTT TTATAGTACC TGAAAACCAA GATTTTGAAA AAATTTTCAA GACAGAGAAT 001520
001521 TTTGATAAAT CCTGACATTG ACCTAATTGA CATAGGTAAA TATGTTTGTA TATGTGCTAA TAATTTTCTA ATTTCGGAAC 001600
001601 ACGATGATGT TATGACTATT Gatttaaaaa tttcaaataa taatttttga aattataGAT GAATGCTTTC ATTTGAGTTT 001680
001681 CATTCTGTAA TTCAGCAGTT CTGGGTGAAA TACAGATAGC AAAACAAATC ATGATGCTGT TACAAATGTA TTAGTTATCC 001760
001761 AATAAGTGTT TTAAGTCAAT TTTTTTAAAA TGATATGAGT CTTACAGGTT TCTTCCATCT TTAAAATGCT CAAACATGGA 001840
001841 TTCAGGGACT AAAAGGATGA ACTGATTAGA CATTTTCTAT TAGGAGTTTG GTAAAATATT GTAAAAATAT CTTCACCTGT 001920
001921 GTTAGGAGTA TTATCAGAAA GAATGGATTC TTTAATAAAT ATGTAAAACA CAGTAGTTTT GGAATTGCCT TCCTTAGTAT 002000
002001 TGTGGTTTTC ACCTAGCTTA TATTCCAAGA TTTACAGAAT AGCTTTTAGG ATAAGATGTT AGGACTTTTT TTTTTTCCCC 002080
002081 ATGAGAATTC CTTTATTTTT GGAGGAAATT ATTATCTAAT TATTGATCTA CTTATAAGTA ATCCTAGAAT TTTTGCCAAA 002160
002161 AGATCCTGTC GTTGCATAAT CAAACAGTTG GTATTCTCGT GCCGTTGTTC AAAGTCATGT GTTTCTTTCA TTTGGTGCTG 002240
002241 AAAATTTCTG ttcaatcatt gacaaatatt tattgaacac ccactctgtg ccatgtaaaa ctatgtcagg tgctggatat 002320
002321 gttgatgaat gaaacagact ctatccttat acaatttgag tcttgtgggC TCAGAAGTAA ATTCTGTGAA AGCTGGACGG 002400
002401 ATAGTCGAAT TGAGTGCTCT TAGTTTTGCC AATATTTAAC ATGTTGTTCT TATCAATTTT TTAAAATAAA TGTTAATGTA 002480
002481 CAAAGTTAAT CTAGGTTTTG ATGTATATCC AGAGAATCAA TTTTTCTTAA AGTATCTGCG TAGACATTCA TAGCAAAGAA 002560
002561 TTTATGACAT ATCAGATAGA AATACATTAA AATGTAGTGT TTTCCCAGAG ATTGATCTGG CTTTTTTTTT TTGATATACA 002640
002641 TAAGATACCA CTTTATAAAG AAGCTCCATA CTATAGAACC TCCCCTAACA GGCTTAAAAT ACCttctttt tttttttttt 002720
002721 tttttttgag aacggagtct tgctttgtca cccaggctgg actgcagtgg catgatctcg gctctgcaac ctccatctcc 002800
002801 caggttcaag cgattctcct gcctcagcct cccaagtagc tgggattaca ggcaggcacc actatgcctg gctaattttt 002880
002881 tgtattttta gtagatatgg ggattcacca tgttggtcag gctggtctcg aactcctgac cttgtgatct gcctgcctcg 002960
002961 gcctcccagt attgggatta caggcatgag ccaccatgcc cggccTTAAA ATGCCTTCTT AAAGGAAAAA TGCCAACTCC 003040
003041 ATCCTTAATC TCAAGGAAAT CTGATTGTCC AAATAGATCT GTTAATATGT AACATATTAA TAGGTAACTT GCTGTGTAAA 003120
003121 ATTATAAGCC ATATTTTAAA AGGTTTTAAA AATACTTATT GTGCTCCATT TGTGATATAA TTTCTAACAT TTCTGCTCTG 003200
003201 TGATGGGGGT TTATTTGTAA GAATAAGAGG CAAAGGAATG TTAGCATAGC AAAAATGTGT TTGAATGAGT TAACCTTTTA 003280
003281 ATCGCAACCC TATGTGAATA AAATTACTCC ACTGTTA
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Predicted Small Protein

Name NONHSAT101028_smProtein_2771:2890
Length 40
Molecular weight 4552.3031
Aromaticity 0.179487179487
Instability index 81.4948717949
Isoelectric point 9.38238525391
Runs 7
Runs residual 0.0107466063348
Runs probability 0.0208948444243
Amino acid sequence MISALQPPSPRFKRFSCLSLPSSWDYRQAPLCLANFLYF
Secondary structure LLLLLLLLLLLLLLEEELLLLLLHHHLLLHHHHHHHHLL
PRMN -
PiMo -