NONHSAT101028
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT101028 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
3317 nt |
Genomic location |
chr5-:36192987..36218359 |
Exon number |
7 |
Exons |
36192987..36195384,36197643..36197766,36200329..36200382,36201208..36201263,36207272..36207367,36211946..36212024,36217850..36218359 |
Genome context |
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Sequence |
000001 TGAACACAAT ATTATTTTAA TTTAAGAATG CTTTCCTTTT TGTATAATAT TTTTTGCTGA GCAAAGCACA AGCTATATCT 000080
000081 AGCTCAGTAT CTTGGACTTT ATGGGTTCTT GATAGAGTTT GACTTAATTT AAGTTACTTG GGAGATTTTG TACAAGCACA 000160 000161 TTAGGTGTTT CCGTTATAAT TGAAAAGAGA ATAAATATTC AAATCTGTCA TTGATAAGGA AGCTATAGGC TTTAGGTGTT 000240 000241 TCTGATATAA TTTATTCATG GAATAACTGG TAACTAGTTT TTATTAACTA TTTAATTTGG TTAAATTATT ATAATGTCTA 000320 000321 CTCTTTAATT TATTCTATTT TAACATAATT TGCCTTTTCT TCATTTTTCT AAGGTGGTTG TGGAGGCAGA GAATCAGGTT 000400 000401 ATACCTTGAA GGGACTGGCA TAAACCCTGT ACCTGTGGAC CTTCACGAGC AGCAGCTAAG CTTGAATCAG CACAATAGAG 000480 000481 CCCTTAACAT TGAAAGAGCT CATGATGAAA GGTCTGAGGC TTCAGGACCC CAACTTCTGC CAGTGAGAGC ACTAAATGAA 000560 000561 GTCTTCATTG GGGAGAGTCT GTCATCCAGG GCTTCCTACT ATGAGATTTC AGTTGATGAT GGTCCATGGG AAAAACAGAA 000640 000641 GAGTTCAGGG CTCAATTTGT GTACTGGAAC AGGATCAAAG GCCTGGTCAT TCAATATTAA CAGGGTTGCA ACTCAGGCTG 000720 000721 TAGAAGATGT TTTAAATATT GCAAAACGAC AAGGAAATTT GAGTCTTCCA TTGAACAGAG AATTGGTAGA GAAAGTAACA 000800 000801 AATGAATATA ATGAATCACT GCTCTACAGT CCGGAAGAAC CAAAAATACT TTTCAGTATT CGAGAACCAA TAGCAAATAG 000880 000881 AGTTTTCTCA AGCAGTCGTC AGCGTTGTTT CTCCTCAAAG GTTTGTGTTC GTTCTCGTTG TTGGGATGCC TGTATGGTTG 000960 000961 TGGATGGAGG AACTTCTTTT GAGTTTAATG ATGGTGCAAT TGCTTCGATG ATGATCAATA AAGAAGATGA GCTTCGAACT 001040 001041 GTGCTTCTTG AACAGTGAAG GATTTCCTCA TGACAAATTT TGATTACTGG CGAGAATATT TTTACTTCAG AAACAGACTA 001120 001121 CCAGTCGTAA AGTGACATTT TTTGGTTATT GTTGAGACTG CTTGCCCGTG GGCTCAGAAG TGAGATTTGC ATTATTCTTC 001200 001201 TGTTGGATTC TGATAGAAAA AAAGACATTC ACTGTATAAG AAAATGGATG GACTGAACCA ATTAGAATTG ATACCAGTGA 001280 001281 AATTTTTATA TTGCTTACAA TTGGTAACCA AGAGTGCTGA TACCTTTTTA AATTTAGAGG GGCAGGCTTA AATAAAGGAC 001360 001361 TAAATATTTA GGATTTGAAA CTTAACTGTA TAAGTGTGTT TTCCTTCCCT TTCCTCCTAA TTGTGGGATT GTCAGAACTG 001440 001441 AACACATATC ATTTGATTAG TGCATATTTT TTATAGTACC TGAAAACCAA GATTTTGAAA AAATTTTCAA GACAGAGAAT 001520 001521 TTTGATAAAT CCTGACATTG ACCTAATTGA CATAGGTAAA TATGTTTGTA TATGTGCTAA TAATTTTCTA ATTTCGGAAC 001600 001601 ACGATGATGT TATGACTATT Gatttaaaaa tttcaaataa taatttttga aattataGAT GAATGCTTTC ATTTGAGTTT 001680 001681 CATTCTGTAA TTCAGCAGTT CTGGGTGAAA TACAGATAGC AAAACAAATC ATGATGCTGT TACAAATGTA TTAGTTATCC 001760 001761 AATAAGTGTT TTAAGTCAAT TTTTTTAAAA TGATATGAGT CTTACAGGTT TCTTCCATCT TTAAAATGCT CAAACATGGA 001840 001841 TTCAGGGACT AAAAGGATGA ACTGATTAGA CATTTTCTAT TAGGAGTTTG GTAAAATATT GTAAAAATAT CTTCACCTGT 001920 001921 GTTAGGAGTA TTATCAGAAA GAATGGATTC TTTAATAAAT ATGTAAAACA CAGTAGTTTT GGAATTGCCT TCCTTAGTAT 002000 002001 TGTGGTTTTC ACCTAGCTTA TATTCCAAGA TTTACAGAAT AGCTTTTAGG ATAAGATGTT AGGACTTTTT TTTTTTCCCC 002080 002081 ATGAGAATTC CTTTATTTTT GGAGGAAATT ATTATCTAAT TATTGATCTA CTTATAAGTA ATCCTAGAAT TTTTGCCAAA 002160 002161 AGATCCTGTC GTTGCATAAT CAAACAGTTG GTATTCTCGT GCCGTTGTTC AAAGTCATGT GTTTCTTTCA TTTGGTGCTG 002240 002241 AAAATTTCTG ttcaatcatt gacaaatatt tattgaacac ccactctgtg ccatgtaaaa ctatgtcagg tgctggatat 002320 002321 gttgatgaat gaaacagact ctatccttat acaatttgag tcttgtgggC TCAGAAGTAA ATTCTGTGAA AGCTGGACGG 002400 002401 ATAGTCGAAT TGAGTGCTCT TAGTTTTGCC AATATTTAAC ATGTTGTTCT TATCAATTTT TTAAAATAAA TGTTAATGTA 002480 002481 CAAAGTTAAT CTAGGTTTTG ATGTATATCC AGAGAATCAA TTTTTCTTAA AGTATCTGCG TAGACATTCA TAGCAAAGAA 002560 002561 TTTATGACAT ATCAGATAGA AATACATTAA AATGTAGTGT TTTCCCAGAG ATTGATCTGG CTTTTTTTTT TTGATATACA 002640 002641 TAAGATACCA CTTTATAAAG AAGCTCCATA CTATAGAACC TCCCCTAACA GGCTTAAAAT ACCttctttt tttttttttt 002720 002721 tttttttgag aacggagtct tgctttgtca cccaggctgg actgcagtgg catgatctcg gctctgcaac ctccatctcc 002800 002801 caggttcaag cgattctcct gcctcagcct cccaagtagc tgggattaca ggcaggcacc actatgcctg gctaattttt 002880 002881 tgtattttta gtagatatgg ggattcacca tgttggtcag gctggtctcg aactcctgac cttgtgatct gcctgcctcg 002960 002961 gcctcccagt attgggatta caggcatgag ccaccatgcc cggccTTAAA ATGCCTTCTT AAAGGAAAAA TGCCAACTCC 003040 003041 ATCCTTAATC TCAAGGAAAT CTGATTGTCC AAATAGATCT GTTAATATGT AACATATTAA TAGGTAACTT GCTGTGTAAA 003120 003121 ATTATAAGCC ATATTTTAAA AGGTTTTAAA AATACTTATT GTGCTCCATT TGTGATATAA TTTCTAACAT TTCTGCTCTG 003200 003201 TGATGGGGGT TTATTTGTAA GAATAAGAGG CAAAGGAATG TTAGCATAGC AAAAATGTGT TTGAATGAGT TAACCTTTTA 003280 003281 ATCGCAACCC TATGTGAATA AAATTACTCC ACTGTTA |
Predicted Small Protein
Name | NONHSAT101028_smProtein_2771:2890 |
Length | 40 |
Molecular weight | 4552.3031 |
Aromaticity | 0.179487179487 |
Instability index | 81.4948717949 |
Isoelectric point | 9.38238525391 |
Runs | 7 |
Runs residual | 0.0107466063348 |
Runs probability | 0.0208948444243 |
Amino acid sequence | MISALQPPSPRFKRFSCLSLPSSWDYRQAPLCLANFLYF |
Secondary structure | LLLLLLLLLLLLLLEEELLLLLLHHHLLLHHHHHHHHLL |
PRMN | - |
PiMo | - |