NONHSAT101085
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT101085 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1609 nt |
Genomic location |
chr5-:38282366..38291088 |
Exon number |
4 |
Exons |
38282366..38282703,38284025..38284205,38285791..38286463,38290702..38291088 |
Genome context |
|
Sequence |
000001 AGGGAGCCTC CCCGAGTAGC TGGGATTACA GGCGACTGCC GCCACCACGC CCGGCTAATT TTTTAAGTAT TTTTAGTAGA 000080
000081 GACGGGTTTC ACCGCGTTAG CCAGCATGGT CTTGATCTCC TGACCTCGTG ATCTGCCCTC CTCGGCCTCC CAAAGTGCTG 000160 000161 GGATTACAGG CGTGAGCCAC CGCGCCCGGC CGACCCCTGT AGGGTTTTAA AGGAGAGAGG CAGCATCCCA GAGGGCAAAA 000240 000241 AGGGCTTCAT TCATGGAGAA AGCAACTGAG CTGGGCAGAG CACAGACGGA ATTTGAATTG GAGGCCAGAG GCAAAGGGAA 000320 000321 CTCCAAGTGG AAGAAGAAAC GGCATGAAAA AAGGGATTGA GAAGGAAAAG GACAAGATGG TTTGGAGAGA GAGCAACTTC 000400 000401 AGCCTGGAAA AGCAGAAATG AGATGCGGCC AAGAAAAAGA CTCCAGCCCA GCCTGCCTTG GTTCTAACCC TGACTGTTAC 000480 000481 TTAACCTCTT TCTGGCTCAG TCAAGAAACT TGAGCACTGC AAGATGATCA TGTGGAATAC CTACTTCAAA CGGATGTTAA 000560 000561 GAGGAGTAAA AGTGTTCTTG TTTCTAAGTG CTTGAAATGC AGCTGGCATA TAATTAAGCT ATGCAAATAT TTACTTTTTT 000640 000641 TTTTTGAAAT GCTGAGTTTA CTGATCACTC TAATTTTTAC ATATGTGTGT CATTACAGAA GATTCAGGCT TTAGCGATGA 000720 000721 CTGGAGGGTC ATTCGCTGGA AAGAATTTCA TCAGTTGGAA CTAAATCATG GTGAGCAAAA GAAAGTCTAC CTAAGTGATA 000800 000801 TGGTTTGGCT CTGTGTCCAC ATCCAGATCT CATCTCGAAT TGTAATTCCC ACAAGTTGTG GGACGGAGGT GATTGAATCA 000880 000881 TGGGGGCAGG TGCCCCAATG CTGTTCTGGT GATAATGAGT GAGTCCCCAA GAGAACTGAT GATTTTATAA GGGGCTCTTC 000960 000961 CCCCTTCACT TTCTCTTCTC TCTCCTGCTG CCTTGTGAAG CAGGTGCCTG CTTCGCCTTC TGCCATGATT GTGTTTCCTG 001040 001041 AGGCCTCCCC AGCCATGCAG AACTTAGTGC CTCACTTTGG AGTCGGCTGA GAAGATCATT CCAGACGGGA GTTTTGACAC 001120 001121 TGTACAAATG CACTGTCTTC ACATCTACGC TGACACCCCT GCCTTTCTAC CTGCAGGTGT CTGTGGCTTA CAAGCTGGTG 001200 001201 CCTCCCACAG ACCCTGTAGT TTGGAGCTAA TGAAGAGCTG AGAAGCTACC AGGATCTGCA ACTTTTTGCC TGAGGGTTTT 001280 001281 CTCAGAAGAC ACAGAAACTG TTCTGCCTAT AAGCCTTGAA GTGCCAGGGA ATTAACACCT ACCTTCCCAC AGCCCTCCCC 001360 001361 ACAGTGACTG ATAGCATTGA TAACGATACC CAAGCTTCAC CCCTCAGGTG GGATAACTGA GCTGCTTGTT CTATACCATG 001440 001441 TTCTAGAGTT TCTCCCATGA GTTTAGGTTC TAATCATCCA CATGTAAATT GCTTGATAAG AAACCTTCAT TGACTCCTTG 001520 001521 TCTCACTTCC CCTCCCCTTA TTTGTTTTGT TTGCACCTTT CAAATAAACT ATTTTCATCC AAAAAAAAAA AAAAAAAAAA 001600 001601 AAAAAAAAA |
Predicted Small Protein
Name | NONHSAT101085_smProtein_1127:1240 |
Length | 38 |
Molecular weight | 3926.5909 |
Aromaticity | 0.0540540540541 |
Instability index | 67.6351351351 |
Isoelectric point | 6.79583740234 |
Runs | 7 |
Runs residual | 0.009422266303 |
Runs probability | 0.0447548388725 |
Amino acid sequence | MHCLHIYADTPAFLPAGVCGLQAGASHRPCSLELMKS |
Secondary structure | LEEEEEELLLLLLLLHHHHLLLLLLLLLLHHHHHLLL |
PRMN | - |
PiMo | - |