NONHSAT101190
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT101190 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
4581 nt |
Genomic location |
chr5+:42153042..42175444 |
Exon number |
7 |
Exons |
42153042..42153776,42154408..42157540,42157823..42157966,42159126..42159155,42159327..42159548,42168564..42168689,42175254..42175444 |
Genome context |
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Sequence |
000001 ACTCCTATTC AACTTCACCC ACAGCGAATT AAAAGGCTTT CAGACAAACA ACAGTGATGG CACAGGAACA GCAGCCTATC 000080
000081 GGATGCTGAG GAGTGGTGGG GTGGCAGATA GGTAAGGCAA GGCAACTTCT CAAGTGTCAT CAAAGTTTAA GTGAAACAAA 000160 000161 ACATACTGGA GGCACTGTTT CATGAACATT CAAATCAATT ACATTCAATG AAATCTAATT ATTGTGCACT GCTATTTGTA 000240 000241 TTCTAAGTGA TTTCTTGAGG CGAAAAGAAC AGAACCTTCT CAATTAGAAA AGAGCTAACA AATATTTTAT TAAACACCGA 000320 000321 ATGAGAATTG CACTGTGGTA GGCCACAAAG TTCCAAAGAA CAAATAAGAT GGCTTAGGGT TTTGAGAAAC TTGGATACTA 000400 000401 TGAGCTGCCA ATGAAAGAGA AGGTTGGCAT CCCTACCCTG TCATTGGGAA ACTTGAGTAC ACTGCAGTCC TCTTATTAAG 000480 000481 ACATTTCTGA GAAGAAAAAA AATAAAATGT AGGTGTTCTG AGGTGCTGTA GAGATGGAAA ATAAAATGCT CAGATGCCTC 000560 000561 CATTCCCTTC TGTGCCTACA GTAGACGTGG GGTTTCAAAC AAGACTTTTT TTCTTGCTTT TCCAGAACTC TTTCCATTTC 000640 000641 GTAAATTCAG CACTGTCAGT TCTATGGAGG CATTAGCTGC ATCCAGACAA CTTCATTCCT GGAAATATGT ACTAACAACT 000720 000721 CCCTTTGTTG GCTTTaatat ggtaaaactc catctctaca aaaacaacga caacaacaac aaaattagcc aggcatggtg 000800 000801 atgtagtccc aactacttgg gaggctgaag tgggaggatt gcttgagccg aggaggtcaa gacagcagtg agccatgata 000880 000881 acgccagtgc actccagcct gggccacaaa gtgagagacc tcttccaaaa aaaaaaaaaa ttgttttctt attattgacg 000960 000961 tcttattata gacacaagtc ttatcaaata tgtgttttgt aaatatttcc tcccttctat ggctcgtgtt ttcattttca 001040 001041 tttttgtaat attgtctttt gaatagtaga aatttttaat ttcaataaag tagaatttac aaacattttc ttttaaaggt 001120 001121 tatgctttca atgtcatatc taagaaatcc tagccaaagg ttacaaataa tttctcctgt atttttataa aagtcttata 001200 001201 attttaagtt ttatgtttag ttctatgatg catttgagta aatttttgta tatttttctt taatttcctt taatttatag 001280 001281 tagtctcctt ggtttttagt tttgcttttt atgatattga ctttttttta gaagtgaaca gaccacttgt cttgtataat 001360 001361 atccaacaag ttggatgtgt ctaactggtt tctcatgctt aggttcaggt taaacatttc tggcaagatt aatttacaga 001440 001441 agttttgtac tcaatgcaca acaacaaagg ACattaaaaa gaactcacac tgatattttt aattcaaatt tgatattaca 001520 001521 tggtttcttc tttagctatt caaatgttat atttatattt ctttatctct cacagtgaaa cccttggttc ctcttagtaa 001600 001601 tatacttatt tcacatacta taaatcaaac agtttcagaa ttaaaacaat attacagcct gcaataaact gttatgtaca 001680 001681 gcttaatatt tctttacagt tcttttttct tttaTAATGG ACCCTATTAA GATAAAACAA ATGTTTTCAA AAGTATGTGA 001760 001761 ATTAATTCCT CTCCTTGCAT AGCTATattt aatattcaat ttaatatgaa tattcaattt aatgaattta atattcagtt 001840 001841 taatattcaa tttaatgaat ttaatattca atttaatatt caatttaata tgaatttata ttcaatttaa tatGAAGTCA 001920 001921 GATTCATTTT TTATCTTCAT ATTCAATTTT AGAGTTTGCT TTTCTAACCT TAGTTTTATT TTTAATAATT CAGTTTTATT 002000 002001 GTTTCAATAT GTACAGCATT TGCATAACTC AAATTACAAA TAATATGTGA AACATTTTAG cttttcaccc attcccattt 002080 002081 ctacccaatg gataaccatt ttcattagtt tctatatgtc ctttctactt tcgtatttgt tttttgtttt cacaaaagta 002160 002161 agcaaatttg tgatatctat tctcattcct ccttctttct tatgcacatg tagcatagca tatacaccct tctgcacttt 002240 002241 gatttttttt ttttttcagt taaaaatacg ttctggaaat cactccatga cagttcatgg acatgtcact cattcttttt 002320 002321 tacaacttca taaaaattca ttttgtggat aaaccacagt ttatcctttc acataaatag acatgtattt gaaagataca 002400 002401 aaaatagaca gtaacttgct attactaaca atgtaacatt gaatagcttc cattttgcct acatatagag agatatgtct 002480 002481 tcaagatgaa ttcctagaag tgaggttgct aggtcaaagg gtgattgcat atatggttct aacagttatt gttacattaa 002560 002561 tctctttaga ggctatacca ttttgcactc tcaccagcaa cataatagag caccttttGC TTTTCAGAAA AAAATATTTA 002640 002641 AATTAGATGC CCATGGAAGA CTCATCAATA TGGGAGATAA TTTCTGATAC AATGTATGCA TTTAtttatt tatttgtttg 002720 002721 tttgtttgtt tgagatggag tctctttctg ttgcccagac tggagtacag tggtgtgatc tcacctcact gcaacctctg 002800 002801 cctcctgggt tcaagccatt ctcctgcctc agccccccga gtagctggga ttacagctgt gcaccaccaa gactggctaa 002880 002881 tttttgtatt tttagtagag atggggtttt gccatgttgg ccaggctgat cttgaactcc tgacctcaag tgatccaccc 002960 002961 acctcagcct cccgaagcgc tgggattaca ggcataagtc aacacacccT ACCTGAAATG TATGCATTTA AAGCAGCTGT 003040 003041 AAATTGCTAG TAGGTCATAC ATAACTGAAT ATAGAGGTGT GGAAAGATAA GAAAGAAAAG CTGTAAATAT GTGAAAGGAG 003120 003121 ACAATGCCTG TGGATGTGGT TATTATCCTA GGAGCTGACT TCCCACTCTT TTCCTGCCTT TTCACCTTCC CAGGCCAACT 003200 003201 GCCTCTTATC CTTTCATCAA AACAATGGAT TTGTGAGATG GGGAGGTGCA TTTTACTCCT GAGCACCCCT TAGCTTGCCT 003280 003281 GGCTTATGAG TGCTGTCTTT GATGTTCCCA AAGGTTATAA ATCATTTATA AGATCCCTTA ATCAGAACCA GTGTCTGAAT 003360 003361 TCTTTACTTA CCAATTCATC CCATGAACAA CTTTCTGGAA ATAGCTAGAG GGGCAGAGAG GAATCAGGCT GCATTCTTTT 003440 003441 TTAAGTGAGT GCCAACTATT CAGATTAAAG AGTATGGAAC TCTCTCTTTC TAGTACAATG ACATAGAGGA AAGAAGGTCT 003520 003521 GGGTACACAG CTGCCCTCTT AGGCAAGTGC TGGGGAGTTT GTTTCCACAT TATCTCTTAA CCCTTCTCAG TTTTGTTCCC 003600 003601 AGGGGAAGAG GACCAAGTTA GCTGATAAAT GAGACAGAAA AATTTCATTG ACCGGGCTGG GCATTCAGGA TGTAGGGTTT 003680 003681 TTGCTTTGTA ACTCTAGTTT CCATCACTCT TGGTCTTCCC AGAAGTTGCT TGATTTCAGA CAGAGTATTT TCTTGTTGCT 003760 003761 GAGAAAAGAA ACTGAAATCT TGCTCTGCCC CCAATAGGAA TAAACATTAT AGTCTGCAGT CAGAAACAAA GCACATTGCA 003840 003841 CCTGGAAAGA ACAAAAATCA AAATGAGTAT AATGTTTTAC TTGTCTTTTC ATATGGCCTA CTTCTCCCTT GCAGTAAATG 003920 003921 CCTCAAGTTG CAAATTTCCA GGTTCTACAT TCACGATTCA GGGTGGGCAG GGTAATAAAA GTCTCTGCAC AGTTAGAGAC 004000 004001 TCTGCAAGGC TATACCATTA ATTCCTTGGT CCTGAGATAA CAcatcccga tgtataatct caattaattg actttcttag 004080 004081 aatctctcat attcattccc tgctcttcat cgttctttgc tatatccctt atggaagcca ccatcatgtc ttacctggat 004160 004161 attgcaatag tcttaagagt agtttctttc tattctcctt cttgtttagc tatccacatt cttcctccaa accatccatt 004240 004241 cataatgcag ccagaatgat gtctCCCCCA TTGATGTGCA GACTCTGAGC CCCCTCCTCT CTGGAGCTTC CAGCTGCTAC 004320 004321 AGCTTCCTCA AGTTAGCAAG ACCATCTTGT TTTGCTGATT TCAGCTTGCT GGGTTTCAGT ACCGATAGTC ccattttgga 004400 004401 ggctagaaag ttcaaggtcg agaggctgca tctgctgagg gcctttttgc tggtgaaaac attctggaga gtcctgaggc 004480 004481 attgcagggc atcaGTCTCT TCCCCGTGAG GACTTTGCAT AAAAACTGTT GAATTGAGTA AGACTTCACC TTTTTTTGTA 004560 004561 ACACAGAGCT CTGACGCAAA G |
Predicted Small Protein
Name | NONHSAT101190_smProtein_2900:3049 |
Length | 50 |
Molecular weight | 5111.7195 |
Aromaticity | 0.0612244897959 |
Instability index | 44.4244897959 |
Isoelectric point | 5.30401611328 |
Runs | 9 |
Runs residual | 0.0216216216216 |
Runs probability | 0.0268503797916 |
Amino acid sequence | MGFCHVGQADLELLTSSDPPTSASRSAGITGISQHTLPEMYAFKAAVNC |
Secondary structure | LLEEEELLLLHHHHLLLLLLLLLLLLLLLLEELLLLLHHHHHHHHHHLL |
PRMN | - |
PiMo | - |