NONHSAT101354
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT101354 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3155 nt |
Genomic location |
chr5+:44826678..44836603 |
Exon number |
4 |
Exons |
44826678..44828418,44830990..44831818,44832987..44833074,44836107..44836603 |
Genome context |
|
Sequence |
000001 TTTTTTCTTT TCCTATTGGA GGTTTGACAC CTATATTTTT CTCTGACATT TTGGAAATTT GCTTCCCAAA GTCAAAAACA 000080
000081 TAATGCCTAA CTTTTCCCGA TTTGGCCAAC ATCAACTTTA AGATTCTGTG GTTATCTTTT TACCAAGAGA TTTGTCAGTT 000160 000161 TTACTGCCCC AGTCATTTCC TTTTTACTGA TTAGAATTAG GCCTTTGTGT AGCTGTTCAC CTAATTACTT CCTCTACCTT 000240 000241 GTGAAAAAGA GCAGGGACGC TAACATTTGC TGGGTACCTA CTACATGCCA AAAGTACTTA ATCGTATGCA GTAATGTCAT 000320 000321 TTAATTTTCA AAACAACTCT CCAAAGGAAG TGTCACTCTC CTTGTTTGAT TTCTTGCTTC CCAAATGGAA GGTCCTTTGT 000400 000401 ATTAATAGTA TCTGTCAAAT TTCATACAAT ACTTAAATAT GTTCTTGATA CGTACTTCAA TATAACCAAC AGAATGAGGC 000480 000481 AGTATTCGAT AAAGTAAAAA ATAAGATGAA TATTTCTAGT GATTTATAAG TTACTTGAGG AAATCATGCT GTTTATTCTT 000560 000561 TTCCTTTTTA GGTATTCTTT GTGAATTTGC TATTTGTGTG TGAATATATC TGTTGCGATA ATGAATAACC ATATGAAATG 000640 000641 GATAATTGTA TGAAAATTCA TTTGTAATTC AATAGATTGC CAGGGATTTT AGGTTGGTTA TGAAGGTTTG TTTTTTTTTT 000720 000721 TTTTTTCTTT TGGAGAGTGG GGAGATTGGC ATACAGTTTC AAATTGTTTA TGTGGAAGTT GGAAGTGTGA CTAAGCTCGA 000800 000801 AGAAAGGAAG AGAGGGACAA AGAAAGGGAG GAGGTACCCC TAAGTGGGAA CCTACCAGGA CATTCAAAGC AAGAGCAGTA 000880 000881 AGTTCTGAAT GTTCTGGGAC AACCTGGGTG ATATGCATGG ATATGGGCTG TGGAGGCTGA GCATTTTAAT GATAACTTAG 000960 000961 GGAAACGAGG CATGGCCATG GTGTAAAACT CTCAAATCCC AAGCCCTAAT CCAACCTTAA AATCCGAGTC TTCTAAAGGG 001040 001041 CTGTTTTAAC CATGAAAGGA CCATAAGAAA GGCAATTCAC AGAAAATGAA GCCATGTGGC CAAGAAATAT AAGAAAAACA 001120 001121 GTAAAAGCCC TTAATCTCAA TAGCAATAGA GTGGATGCAA ATGAATATAA TGAGTTGCCA TGTCGTTCTT ACTGGATTGG 001200 001201 AAAAGAAATT AGAATGTCTA AATAACATGT ATCATCCAGG ATGTGGGGAA ATGGGAGCTC TTGTACCCTG CAGGCAGGCA 001280 001281 TTTAAATTGG TGCAACCGCT TTGGATTGCT GCTTTGTAGT ATCTGGTGCA ACTGAAGATG AACATGCCCT GTGACACAGC 001360 001361 AACCGCACTT CTAGGTCAAT ACCCTAATTA TATTCTTACT GTGGTTCACA AGAAGGTATG TAAGAGGTCA TTGCCTGAGC 001440 001441 ACTGTTTAGA ATAGGGGCAA ACTGGAAATC CTCTAAATGT CTGTCAATGA AGGAATAGAT AAATTGTAAT ATGTTCATAT 001520 001521 AAAATGCTGC ATAAATAAGT GAAATTTATA AATATACTAA CGAATGAATC TTGAAAACAG AGTTGGGAGA TAAAAGCAAG 001600 001601 CTGTTGAAGA ACATGGTCAG TATCCTCTCA CTTATGTAAG TTAAAAACTC CAAAGAACAT TATCTATATT GGTAATGGCA 001680 001681 TAGACATGTG TGGTAAAATA TAAAAATATT AACTAAAAGT TCTATACGCT TCAGGATATT GTATTTTTGC TTATATGTAT 001760 001761 ACCAATGTCT TCATGCTTGG CAGTAGGAGA AGAGAAGGGA AGTTGGGGCG GAAAAGAGTA GTGATAAGAG AAGATATAAA 001840 001841 GCTATTTTTA GTTTTAAATT AAATCCACAA AGACTAAATT TGATGAAGGT GATGGGGTGT TTGGAAACAT CCAAGACATA 001920 001921 ATGGTTTTTC AGAGGATGGT TTTCATATTC TTTATATTCA AGTTTACTTT TTCCTAATAA TAAAAAACAT AAAGGAGTCA 002000 002001 AATATTTTTA GATGCCTGTG GATTTTGAGA ATCTTACCTC ACTCCAGGTT TATTTCTGAG CTCTATTATT CTTTTCATGT 002080 002081 ATATGAGGCA AATACAATTA AAATTTAAAC ATAAAATACA GTGTTGCTGC TTTTGCTGTA ACACATAAAG TAAGCATAAA 002160 002161 TGAGTCTCAG TTACACAAAC ATAAAAATAA TCATCCATCC AGGAAAGTAA TTTAAAACAA ATTATAGTCA GGGAACTGAA 002240 002241 ACTGATACTT TTAACTGTTG ATATAAAATG TGAATTAGAT TGTAAAAACT CAAGAAAATA ATTATTATAA ACTAGGTATA 002320 002321 TATGTGTGTA TCTGGAATGA AAATTTGTAG AAATAGATAA AAAGCCACAA AATCCTTTTA GTCTTAGAAA TAATAATCTT 002400 002401 AAAATGCTTT TAGTAAATTA CAAAGCTTTT GTTGTCAAAA AGTACTACAG TCTGATTAGG AATTACATTT TCTGTGATCT 002480 002481 ATGCCATAGA CCTCTCCACA TGTGCTAACT TTTCCTGAAA TGTAAATGAG CAATGTTTAT GAAAATAGCT TATTTTATTA 002560 002561 ATATTTGAAG TTGAGACTCT CCTCCTGTTT ATCCCATCAT ATACTCACTG TATTGTACTT CTTTGTTCCT AGGTTCCCTG 002640 002641 AGAGTATGCA TTGTGTTTGG AAGCTAGGCC TTAGATGAGA AGATGGTCCT GGAGGTTGCT ACTGGAGAGG AGATTGGAGC 002720 002721 GTGGTTAGAG ATGAAGGGTC AGAGTCCCCA GAGTCTGTGG CATGCAAATA CTGTTGAAAC AAACAGTGGA TCCACTGGAC 002800 002801 CAGTGCATGT CTTGTGCCTT TGCACACTTT TTTACATGCA CGTAACCAAG GATGGCTTCA AGATCATGGC CCAATTATTA 002880 002881 ATCGAGAAAA AGGGATACAT AAAGTAAGAG CATGATGGTG CTTATCCTAG TGGAGACTTC TCCCTTGGTT GCCATAGTCA 002960 002961 TTGACTAAGC ACTTCGTGGG AATAAATGTT CCAATAGCAG AGACTTCCAC CATTAGCAGA ACCATCAGCT CATATTTATT 003040 003041 TCACTGCATA TTTCACTCGA TTACTTGAAA AGACATATTT TTAGAGATAA ACTACACTGG GACAGATATC ATAACACCGT 003120 003121 AGTTTTTTTT GCTAATTCAC ATATATTATT TCTGG |
Predicted Small Protein
Name | NONHSAT101354_smProtein_1154:1318 |
Length | 55 |
Molecular weight | 6032.286 |
Aromaticity | 0.0555555555556 |
Instability index | 57.8277777778 |
Isoelectric point | 7.69378662109 |
Runs | 9 |
Runs residual | 0.00397470641373 |
Runs probability | 0.0281752340575 |
Amino acid sequence | MQMNIMSCHVVLTGLEKKLECLNNMYHPGCGEMGALVPCRQAFKLVQPLWIAAL |
Secondary structure | LLLEEEELEEELLLHHHHHHHHHLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHL |
PRMN | - |
PiMo | - |