NONHSAT101421
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT101421 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2354 nt |
Genomic location |
chr5+:52405672..52410953 |
Exon number |
3 |
Exons |
52405672..52405978,52408070..52408864,52409689..52410953 |
Genome context |
|
Sequence |
000001 TCCGCCCCGC GCCGGGCTCT AGCTGTTTCC CTCAGGCGGC CTGTTCCACG CCAGGATTAG TTTTGCTTCG CAGATGGGCC 000080
000081 GTGGTGGTGA GAGGAAGCAA TCAGTATGGA AATGGAGAAA TGGCTTACCA TGCATGTCCT TCTCCCCAGG AGGGAGGTCG 000160 000161 TGGTGCAGGC GAGCAGACGC CAGACTCCTG GACACTTGCC GCCTGCGTTA TGGAGGCTTA GCTAATAACC TTGCAGGGGT 000240 000241 CTTCAGGCTT TTCCACTGGC TCACCTTTAG GCTTCTGACA CTTTTACCTA CGATTGAAAA AAGACGAGAT TCCATGAGAC 000320 000321 TAGAAATGTA GGAGCATCTC AGACCTTCAC AGAATGCTCT GTTAGAAGAT GAGAAACATA ACGTTGCTTG TGAGAGGTGA 000400 000401 AGCCAGCTGG ACTTCCTGGG TCGAGTGGGG ACTTGGAGAA CTTTTCTGTC TAGCTAAAGG ATTATAAATG CACCAATCAG 000480 000481 CACTCTGTAA AAACACACCA ATCAGCGCTC TGTGTCTAGC TAAAGGATTG TAAATGCACC AATCAGCACT CTGTAAAATG 000560 000561 GACCAATCAG TACCCTGTAA AATGGACCAA TCAGCAGGAC GTGGGCAGGG ACAAATAAGG GAATAACAGC TGGCGCCCCT 000640 000641 AGCCAGCAGT GGCAACCCAC TCGGATCACC TTCCATGCTG TGGAAGCTTT GTTATTTCAC TTTTCACAAT AAATCTTAGT 000720 000721 GTTGCTTACT TTTTGGGTCC ATGCCACCTT GAAGAGCTGT AACACTCACC ACGAAGGTCT GAGGCTTCAT TCTTGAAGTC 000800 000801 AGACTAAGAA CCCACCGGAA GGAACCAATT CCAGACACAC GTGTAGTAGC AAATTACCAA AAATGTTCAT TGCCTTTTCT 000880 000881 GAAAAACAAT TTTCCCAGAA ACACCTGGCA GAATCAGAGT TCATTGTGTC AAAAGAAAAA CTTTGGACAA ATTAAAATGA 000960 000961 GCAAAGAACA ATTTGTGAAA TGTGCCCCTC TCCCAACCAG AACAGGTTCA AAGAGACTCC AGTGCTGCCA CATGATCAAA 001040 001041 GAATTATGGA CAAAAAAAGC AAATAAATTA CAGGAAAAGA AAATGAGATA ATGCAGTAGT TACTTTTTGA AGGACGACCG 001120 001121 AAGCAGGATA TTTCCCTGAC CCCTTCATGG GACCCACGTC AGAGGTGTTT ACTCAGCCTG CTGCCCACAA CTCCTCACAG 001200 001201 GAGGGAGCGC ACAAGTGAAC GAGGGTGAGG ACTGGAGAGC ACCAGCACTG GAACAACCCG GCCACTTCGG CGCTACTGGG 001280 001281 ATCAAACTCC ATCACTTGGA CACACTGTGT TCCACCCCTC GTGGGAGGGA GCATGCAGGT GAGAGGATGC AGGAGTCAGG 001360 001361 GTGAGCACTT TTGGGCTCCA GCAGGAGCAA ACTCTGTGCA GGGCCCTGCA GCAGTGACTG AGGGGCGGCC TGTGACTCCC 001440 001441 AAAGCCCCAG AGGACATGCT ACAGTGCTCT TTTAGCTCTA CCATCCGTAG GTGGCTTAAG TGTAAACAGC TCAGTGGGCC 001520 001521 CTTTGCCTTT TTGCGTGAGG CAGCTGCCCT AAGCAAGAGT AAAGGGCCAG TGTCACAGCC TTCTGTATCT GCACTCATGA 001600 001601 CTCCTGAGCT CTTGTCCTGC ATTCAGGGAA AATGAGGTTA CACAAAAGAA TTCACAGATG GTAAATGCGG GGTATTTTAT 001680 001681 TCCCAGTGAA AGTGGCTCTC AGCAGGAAGG AGAGCAGAAA AGGGGATGGG CTGGGTAGGT AACCTTCCCC TGAAGTCCTG 001760 001761 CCATCTCTGG CTGGATTTTT CTCCAAAGTT ACACCATCAA AATGTCCCTC TGAAATCAAG CCACTTCTCT CTGACATCCA 001840 001841 GCCGTAGTCC CTCACGTCCA GTTGCTTCTC CTCTCTGCTG GCTGAGTCTG TGGTCTTTAT AGCACAGGAT GGCGGGCAGG 001920 001921 GTGGGCCATG GGTAATTTAG GAAAAAGCAA CATTTGAGCA GACAAAAGGG AGAGAAGTTC TCTACTTTGG GCTGCGGTTT 002000 002001 CAGGCTTTTT GGCTTGAGGG TGGGGTTTTG TCAGGGACCC TCCCTTTTCT GCCTAAAATT TCTCTGCCTC CTGCCTCTAT 002080 002081 CACTGTATCA CTAGTTTGAA GTAAACCCAT CTGGAATTAC TGATTTTAAC AAATCACACA GAATTTCAAG CACCTTTCTA 002160 002161 TGCAAATGAC TTGTGAAGAC ATAGAGTATA GTATGCCGTT AACAAACAGC CCAGCAGTGT GCCTTGCACC TTGTAGGTGT 002240 002241 ACAAAATATT AAGTCAATTT TATAATTGAA GGAGGTAATT TTAAAATGCT ACATCCATGT TGTGTAATTT TATTCATTGG 002320 002321 TCATTTTAAA TAAAAACAAA AGCCAGAATA AAAC |
Predicted Small Protein
Name | NONHSAT101421_smProtein_956:1090 |
Length | 45 |
Molecular weight | 5235.3178 |
Aromaticity | 0.0454545454545 |
Instability index | 70.0772727273 |
Isoelectric point | 10.1299438477 |
Runs | 5 |
Runs residual | 0.0494652406417 |
Runs probability | 0.0333863275041 |
Amino acid sequence | MSKEQFVKCAPLPTRTGSKRLQCCHMIKELWTKKANKLQEKKMR |
Secondary structure | LLLLLEEELLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHLLL |
PRMN | - |
PiMo | - |