NONHSAT101421

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT101421

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2354 nt

Genomic location

chr5+:52405672..52410953

Exon number

3

Exons

52405672..52405978,52408070..52408864,52409689..52410953

Genome context

Sequence
000001 TCCGCCCCGC GCCGGGCTCT AGCTGTTTCC CTCAGGCGGC CTGTTCCACG CCAGGATTAG TTTTGCTTCG CAGATGGGCC 000080
000081 GTGGTGGTGA GAGGAAGCAA TCAGTATGGA AATGGAGAAA TGGCTTACCA TGCATGTCCT TCTCCCCAGG AGGGAGGTCG 000160
000161 TGGTGCAGGC GAGCAGACGC CAGACTCCTG GACACTTGCC GCCTGCGTTA TGGAGGCTTA GCTAATAACC TTGCAGGGGT 000240
000241 CTTCAGGCTT TTCCACTGGC TCACCTTTAG GCTTCTGACA CTTTTACCTA CGATTGAAAA AAGACGAGAT TCCATGAGAC 000320
000321 TAGAAATGTA GGAGCATCTC AGACCTTCAC AGAATGCTCT GTTAGAAGAT GAGAAACATA ACGTTGCTTG TGAGAGGTGA 000400
000401 AGCCAGCTGG ACTTCCTGGG TCGAGTGGGG ACTTGGAGAA CTTTTCTGTC TAGCTAAAGG ATTATAAATG CACCAATCAG 000480
000481 CACTCTGTAA AAACACACCA ATCAGCGCTC TGTGTCTAGC TAAAGGATTG TAAATGCACC AATCAGCACT CTGTAAAATG 000560
000561 GACCAATCAG TACCCTGTAA AATGGACCAA TCAGCAGGAC GTGGGCAGGG ACAAATAAGG GAATAACAGC TGGCGCCCCT 000640
000641 AGCCAGCAGT GGCAACCCAC TCGGATCACC TTCCATGCTG TGGAAGCTTT GTTATTTCAC TTTTCACAAT AAATCTTAGT 000720
000721 GTTGCTTACT TTTTGGGTCC ATGCCACCTT GAAGAGCTGT AACACTCACC ACGAAGGTCT GAGGCTTCAT TCTTGAAGTC 000800
000801 AGACTAAGAA CCCACCGGAA GGAACCAATT CCAGACACAC GTGTAGTAGC AAATTACCAA AAATGTTCAT TGCCTTTTCT 000880
000881 GAAAAACAAT TTTCCCAGAA ACACCTGGCA GAATCAGAGT TCATTGTGTC AAAAGAAAAA CTTTGGACAA ATTAAAATGA 000960
000961 GCAAAGAACA ATTTGTGAAA TGTGCCCCTC TCCCAACCAG AACAGGTTCA AAGAGACTCC AGTGCTGCCA CATGATCAAA 001040
001041 GAATTATGGA CAAAAAAAGC AAATAAATTA CAGGAAAAGA AAATGAGATA ATGCAGTAGT TACTTTTTGA AGGACGACCG 001120
001121 AAGCAGGATA TTTCCCTGAC CCCTTCATGG GACCCACGTC AGAGGTGTTT ACTCAGCCTG CTGCCCACAA CTCCTCACAG 001200
001201 GAGGGAGCGC ACAAGTGAAC GAGGGTGAGG ACTGGAGAGC ACCAGCACTG GAACAACCCG GCCACTTCGG CGCTACTGGG 001280
001281 ATCAAACTCC ATCACTTGGA CACACTGTGT TCCACCCCTC GTGGGAGGGA GCATGCAGGT GAGAGGATGC AGGAGTCAGG 001360
001361 GTGAGCACTT TTGGGCTCCA GCAGGAGCAA ACTCTGTGCA GGGCCCTGCA GCAGTGACTG AGGGGCGGCC TGTGACTCCC 001440
001441 AAAGCCCCAG AGGACATGCT ACAGTGCTCT TTTAGCTCTA CCATCCGTAG GTGGCTTAAG TGTAAACAGC TCAGTGGGCC 001520
001521 CTTTGCCTTT TTGCGTGAGG CAGCTGCCCT AAGCAAGAGT AAAGGGCCAG TGTCACAGCC TTCTGTATCT GCACTCATGA 001600
001601 CTCCTGAGCT CTTGTCCTGC ATTCAGGGAA AATGAGGTTA CACAAAAGAA TTCACAGATG GTAAATGCGG GGTATTTTAT 001680
001681 TCCCAGTGAA AGTGGCTCTC AGCAGGAAGG AGAGCAGAAA AGGGGATGGG CTGGGTAGGT AACCTTCCCC TGAAGTCCTG 001760
001761 CCATCTCTGG CTGGATTTTT CTCCAAAGTT ACACCATCAA AATGTCCCTC TGAAATCAAG CCACTTCTCT CTGACATCCA 001840
001841 GCCGTAGTCC CTCACGTCCA GTTGCTTCTC CTCTCTGCTG GCTGAGTCTG TGGTCTTTAT AGCACAGGAT GGCGGGCAGG 001920
001921 GTGGGCCATG GGTAATTTAG GAAAAAGCAA CATTTGAGCA GACAAAAGGG AGAGAAGTTC TCTACTTTGG GCTGCGGTTT 002000
002001 CAGGCTTTTT GGCTTGAGGG TGGGGTTTTG TCAGGGACCC TCCCTTTTCT GCCTAAAATT TCTCTGCCTC CTGCCTCTAT 002080
002081 CACTGTATCA CTAGTTTGAA GTAAACCCAT CTGGAATTAC TGATTTTAAC AAATCACACA GAATTTCAAG CACCTTTCTA 002160
002161 TGCAAATGAC TTGTGAAGAC ATAGAGTATA GTATGCCGTT AACAAACAGC CCAGCAGTGT GCCTTGCACC TTGTAGGTGT 002240
002241 ACAAAATATT AAGTCAATTT TATAATTGAA GGAGGTAATT TTAAAATGCT ACATCCATGT TGTGTAATTT TATTCATTGG 002320
002321 TCATTTTAAA TAAAAACAAA AGCCAGAATA AAAC
[back to top]

Predicted Small Protein

Name NONHSAT101421_smProtein_956:1090
Length 45
Molecular weight 5235.3178
Aromaticity 0.0454545454545
Instability index 70.0772727273
Isoelectric point 10.1299438477
Runs 5
Runs residual 0.0494652406417
Runs probability 0.0333863275041
Amino acid sequence MSKEQFVKCAPLPTRTGSKRLQCCHMIKELWTKKANKLQEKKMR
Secondary structure LLLLLEEELLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHLLL
PRMN -
PiMo -