NONHSAT101495
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT101495 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
2303 nt |
Genomic location |
chr5-:54717354..54719628 |
Exon number |
1 |
Exons |
54717354..54719628 |
Genome context |
|
Sequence |
000001 ACGCGTCCGG ATTAACTTAG TCCTTTTTCT TGGTCAAGAG TCAGTAGACA GGACTGAAGC TTATGCCCCT TGCCCCCCCA 000080
000081 CCACCACTCC ATTACTACCA CCTTGGTTTA GCCATCCTTT CTTGATCTGT TCTCCCCACT TCTACTGTGC TACTCTACAG 000160 000161 ACTTGCCCTG AATGTAAGAG CAACAATTAC CTTGTAAAGT CCAAGTTGGG GCAGGTCACT CCCAAACTCC ACACCTCCAG 000240 000241 TCACTGCAGA GTTGAGAAGC CTGGGGCTGG GAACTATGGA ATCATTTCCT TTCTCACTTC AACCCCTACT CCTCTACTCA 000320 000321 CTGCCCATTC TGCTCCAGCC ACACTGGCCT CTTGCTGGTG TTCACGTACA TCAAGCATAC ACCAAAGGCC TTAACTGCCA 000400 000401 CCTTCCCTGT GGAGGCCCTA GACCATCATA TCCATCTGCC AATTCTATTG TCTTTTCTGC TTTGTTTTTA TCTTACAGAC 000480 000481 TTATCACCAT CTGATAGATT TAATTGTTGA CTTATTGTCT ATCTCCCCAC ACTAGAATGT AAACTCCATG AAGGCAGGGG 000560 000561 TGTCTTTTTG TCTCACTATA ATCCCCTAGT GCTTTAAAAC AATGCCTGGC ATGTAGTTAG CGTACAATTA ATATACGTAA 000640 000641 ATGCATGTAT ATATAAAATC TCAACTTTTC CCCCAACACA CTAAATTTTA TAGAAACACT AGTAGATAGC TCTCCATGAC 000720 000721 AATGCAGTGA AGAACATCTC AAAACGTCCT CCTAGGTTGT GGTCCAGGGC TCAAGATTTG CTTCACCAAA TTTGTCTAAA 000800 000801 TTAGAAACAG CTTATCCATT TGATACTGAC CTTCTGCAAA TTTATTTTCC AGCTCAGTGT TTCCAATGGC TTTTGCTGCT 000880 000881 TGACACATTT GTCGAAGCAA TTCTTCCAGG CGCCTCATAC AACGAATTAT GCTGCCTGGA TAGAAAAGGA ACAAAACACT 000960 000961 GGTAAAATGG AAATAATCAG GAACAGCAGA ATTTTTGTTA AGAGGCAAGG CAGGAGAACA CAGGATAATT AATAGTACTT 001040 001041 TGAGGGACTT CCCATGAAGT AAATCATGGT TAGGTACTGG AGAAAGCTAC AAAGATGAAA GGCTTAACTC CCACCTTTGA 001120 001121 CTAATGGTAG AGACACCTGT TTATTACTAA CATGCTGACA CTTGGTATTA AGTAGGAAAA CAAAATGCCC TAGAAGGAGG 001200 001201 GAGCAACTTT GGGTGAAGGC TGCAAGGATG ACATAATCTG TGTCTGTAAG AACCAGGCAG TATCTCTCAG GCAGCAGCAA 001280 001281 CAAGGGAAGG ACCACCACGA CAATGCAGAA AAGCCTGGCA AACTGCAGCT ATTCAAGGAC CCTGAGTGTG GCCTAGTGAG 001360 001361 GCATCTGGAC ACCATCCATA CCATCTCATA GAATGCAACA GACTGTTTTT AGCAGGAGAG TAACAAGATA AAACTTGTCA 001440 001441 TTTTAAAGGT GCATTCATTC TTCTTGACCT TAGATTCTTT CATTAGTACG TTCTTTACAC AGTGTTCTCA AGGAGCACAA 001520 001521 GGAAAGAAGC CTTTTCCCAT GGGTCTAGAA TCTGTTTGAG AAAAGTGTTT GTATCAAAGC TGAAGCTATA AACATAGTTT 001600 001601 CACTTTTGCT AGACTTGTGC AAAGAGGAGC AGAGATTGTG AGATCCTTTC TCTAAGTGCT ACCTGCCTAA ATCTAAAACG 001680 001681 CTTGACTTCA TTTTTAATAT ATGAAATACA TTAGGAATAC CAGTTCTCAA AATGCAGTCT GTAGGAACAA TGAACTATTT 001760 001761 ACACTATTAA CAATTATTAA ATTAATAATA ATTATTTGTT ATTTCTATTC TCAGCTGCTA GGAATGCAGG CTCCAATACT 001840 001841 GCCTTGCAAT GAAACAGGAA ATCCAACTGC AGAAACTTCT GGGTGTCAAG AGAGAGGGTA GGAATTGGGA TAGAGAGGGT 001920 001921 AATGTCATAT TACCTATGCA ATCAGATATT AAATGTTTAT GCAAACAAGT ATATCCAAAG ATAATTAAAT TAGGTAGTGG 002000 002001 CTCAAAATGT AACTAGATTT TTACCTGAGA CCAGATTCTC ACAGGTCATT TAGGATTGAA ATGAAATCCT TTACAAAGTC 002080 002081 CTCTGCTGCA TAGGGCATTA AAGAGCCAGA CACATTCTCA AACATTGTTT TGACTGACTT CAAATGTGTA CCAAGAAACA 002160 002161 CAATGTGATA CTATTATTTC ACAAATTTTA GTAACTCGTG TTAACCAGAA TCTGTGAAAG TTATCAGAGA CCAAACCATA 002240 002241 CGAAGTAAAT TACTAAGATA AAGAATAAAC TAAGGCAAGT AAATGCAAAA AAAAAAAAAA AAA |
Predicted Small Protein
Name | NONHSAT101495_smProtein_275:493 |
Length | 73 |
Molecular weight | 8020.3547 |
Aromaticity | 0.125 |
Instability index | 47.5166666667 |
Isoelectric point | 8.77154541016 |
Runs | 9 |
Runs residual | 0.0159164639092 |
Runs probability | 0.0517772674636 |
Amino acid sequence | MESFPFSLQPLLLYSLPILLQPHWPLAGVHVHQAYTKGLNCHLPCGGPRPSYPSANSIVF SALFLSYRLITI |
Secondary structure | LLLLLLLLLHHHHHLLLLLLLLLLLLLLLEEHHHHHLLLLLLLLLLLLLLLLLLHHHHHH HHHHHHHHEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHH HHHHHHHHHHHL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTT TTTTTTTTTTTo |