NONHSAT101508

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT101508

Source

NONCODE4.0

Same with

,

Classification

antisense

Length

2040 nt

Genomic location

chr5-:54991820..55069022

Exon number

5

Exons

54991820..54993040,54993674..54993820,55007280..55007327,55008045..55008554,55068909..55069022

Genome context

Sequence
000001 atccaccatg tgaggacaca gagagaagac accatctatg aaccaggaaa tgggccctca ccagacactg aatctgctgg 000080
000081 tgccttgatc tcagacttct gactctccag aactGGTCCA AGGACGTAAC CAGATCATAC AACACGCGCC AGGAAAGCCC 000160
000161 AAAAGAGGGG TGATCCCTCG ATGGAGGTGC CGCATCAGCG TTTTCTCACG TGGCCTCCGG GGCTCTATGA ATGGCAAGAG 000240
000241 ATTGCATTCC TTCTACTACC CCTCCCAGCC TCCAGCCGGG ACAAGGAACT GGAGCAAACT CGGGGCTGCA GTTCCGACTG 000320
000321 GACTCGCCCA CCTGGGCGCG CCGGCTGCCC AGCCTCCTGA AGCCTCGGGG CTGGGCCCTG CGGTGATGGG CGTGCTGGCC 000400
000401 GTCGCAGAGC CCTCTGGGAG TTGTAGTCCG TAGCGGCGAG AGGTTTGACA GCGACCGCGG GCTTGGCGCA TTCAGAACTC 000480
000481 CAACTCCCGC CGGCCCCTGC GACCCAGGCT ATTGCCGCTT CCTGTTTGGA CTAGGAGCCC CGCGGTCGCA AATTGCGAGA 000560
000561 ATTTGGGAAG GGAATCTTTA TCTTCTCGTC TAGTTCTCCG AGGTTGAAGG CTCGGCCTGC TCAGagaagg aaactgaggt 000640
000641 ccaccgagtt ggagaaacct actcaacacc agGACTAACT TCTTCAGTGC TTAGAGTGTG AGAAAAATGG CAAATATGAA 000720
000721 TAGTGATTCT AGGCATCTTG GCACCTCTGA GGTAGATCAT GAAAGAGATC CTGGACCTAT GAATATCCAG TTTGAGCCAT 000800
000801 CGGATCTAAG ATCCAAAAGc cgcctgcctt ggcctcccaa agtgccgaga ttgcagcctc tgcccggccg ccaccccgtc 000880
000881 tgggaagtga ggagcgtctc tgcctggccg cccatcgtct gggatgtgag gagcccctct gcctggctgc ccagtctgga 000960
000961 aagtgaggag cgtctctgcc ccgccgccat cccatctggg aagtgaggag cgcctcttcc cggccaccat cacatctagg 001040
001041 aagtgaggag cgtctctgcc ccgctgccca tcgtctggga tgtggggagc gcctctgccc cgccgcctcg tctgggatgt 001120
001121 gaggagcgcc tctgcccggc cgccaccccg tctgggaggt gaggagcgtc tctgcccggc cgccccgtct gagaagagag 001200
001201 gagaccctcc gcccggcagc cgccccgtat gagaagtgag gagcctctcc acccggcagc caccccgtct gggaagtgag 001280
001281 gagcgtctcc gcccggcagc caccccgtcc gggaggGAGG TGGGGGGGTC AGCcccccgc ctggccagcc gccccgtccg 001360
001361 ggaggtgagg ggcgcctctg cccggccgcc cctactggga agtgaggagc ccctctgccc ggccagccgc cccgtccggg 001440
001441 agggaggtga gggggtcagc cccccgcccg gccagccgcc ccgtctggga gggaggtggg gggggtcagc cccccgcccg 001520
001521 gccagccgcc ccgtccagga ggtgaggggc gcctctgccc ggcccgcccc tactgggaag tgaggagccc ctctgcctgg 001600
001601 ccagccgccc cgtccgggag ggaggtgggg gggtcagccc cccgcccggc cagccgcccc gtccgggagg gaggtggggg 001680
001681 ggtcagcccc ccgcccggcc agccgcccag tccgggaggg aggtgggggg atcagccccc cgcccggcca gccgcccgtc 001760
001761 cgggaggtga ggggcgcctc tgcccggccg tctctactgg gaagtgagga gcccctctgc ccagccagcc gccccgtccg 001840
001841 tgagggaggt gggggggtca gccccccgcc cggtcagccg cccggtccgg gagggaggtg ggggggtcag ccccccaccc 001920
001921 ggccagccgc cccgtccggg agggaggtgg gggggtcagc cccccgcccg gccagccgcc ccgtccggga gggaggtggg 002000
002001 ggggtcagcc ccccgcccgg ccagctgccc cgtccgggag
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Predicted Small Protein

Name NONHSAT101508_smProtein_230:385
Length 52
Molecular weight 5560.3367
Aromaticity 0.0588235294118
Instability index 55.3215686275
Isoelectric point 11.705871582
Runs 7
Runs residual 0.0169869928169
Runs probability 0.0431019254549
Amino acid sequence MARDCIPSTTPPSLQPGQGTGANSGLQFRLDSPTWARRLPSLLKPRGWALR
Secondary structure LLLLLLLLLLLLLLLLLLLLLLLLLEEEEELLLLHHHLLHHHLLLLLLLLL
PRMN -
PiMo -