NONHSAT101586
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT101586 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2734 nt |
Genomic location |
chr5+:56946507..56976179 |
Exon number |
4 |
Exons |
56946507..56946588,56961078..56961339,56965517..56966542,56974816..56976179 |
Genome context |
|
Sequence |
000001 CTGGGTGGTT GAGGGAGCTC CTGGTGAAAT GTGCTGAGGC TTCTGCTGAG GTTTCTACCT CAGCTCCACG GCCTGGCCAG 000080
000081 GTTTCAATGG ATTGAAGAAA ATGTTCACGG AAGGAAGATG ATTAATTGAT CCAGAGGGCC TGTAGCAACT CTGTTTAACA 000160 000161 TGCTAGATGA GCCAGTCTTA TTCAGTGATG ACTAAGGATC TAGAGAAAAC TGGTGTCAGG TTGGTCTTCT TCTTCCCACC 000240 000241 TATTTTCAGT TGGCCTGCAG TTCCTAGGAT GTGTATCCTG TATGCTGGTC ACCGGAAGAT AGGCAAATTT TTGCTTTGTT 000320 000321 GCTGGTTCTG GGACAACAGC CATGATGACT TCTTGGCAGT CATTTGCAGA CTAAGGTAGC TTTGAAGGTG AAGATTCTTT 000400 000401 GTGTTCATTC TCATCCTGAT GTAAAAATAC TACCTGAGAC TGGATAATTT ATAAACAAAA GAGGTTTAAT TGATTCACAG 000480 000481 TTCCTCATGC CTGGGGAGGC CTCAGGAAAC TTACAATCAC AGCGGAAGGC AAAAGGGAAG AAGGCACCTT CTTCACAAGG 000560 000561 TGGCAGGAGA GACAGTGAGG AAGTGCCATA CTTTAAAACC ATCAGCTCTC ATGAGACTTC ACTCATGATC ACGAGAACAG 000640 000641 CATGGGGAAC CTTCTCCCAT GATTCAATCA CCTCCCACCA GCTCCCTCCT CGACATGTGG GGATTACAAT TTGAGATGAG 000720 000721 ATTTGGGTGG GTACACAGAG ACAAACCATA TCTATCAATT CTGAATGTTT AATACCAGTA TTATTAGAGG AGGATCTAGT 000800 000801 CCCCTTCAGG ACATAAGGAT CTATGATCCT CTGTCAGAAC ATATTAGACC CTTTCCTTTG GCTATAACCA AAAGATTATA 000880 000881 AACATACATC CAGGAATAAA AATAGTATAT TAAAATTGTG TGTGTGTGTG TGTGTACGAA TGTAAATTTT TTGTGCCAAA 000960 000961 TCTAAAGACT CTTTACCTAG TCCTAATGTG TCTTGAAGAT CTTCTGCAGT TTTTTTTCTA GAAATTTTAT AGTTTTATGT 001040 001041 TTTACATTTA AGTCTGTGAT TCATTTTTAG TTAATTTTTT TTGTATAAGA TGTGAAGCTT AGGTTAAGGT TCATGTTTTT 001120 001121 GCCTATGGTT GTTCAATTGC TCTAATAGCA TTTATTGAAA AGGTTAATGA TTTATTTGTA CTTCTGCCAA AATTAATTGA 001200 001201 TCATACTCAT GTGGTCATAC TTCCGCTTTC TCTGTTTTAT ACCACTTAGC TTTGTCTATC TTGCTATCAA TACCACACTG 001280 001281 TCTTGATTAC TGTAGCTATA TATTACTGTA GCTATATAGT AAACTTTAAT AAAAGGAAGA TGAACTTTCT TCTTCTTTTT 001360 001361 TCAAAATCGT AATACAAAAG ATTAAATGGA AGGCTCTGGA GCCCTGAGGA ATAGCAGTTA CTAGACTGAA GGAACCTGAG 001440 001441 TTTCTAGATT GCGATGTTGA GCAGAGTCCC TGCTAACCCA GGAAAACTCT GATGTGAGAA AGAAGAAAAC CCGGATTGCA 001520 001521 CTAACTCACC GAGATTTCGA AGTTTAGTTG TTCGGCGATG AACTTGTCCT GAACAACATA GAGGAACAGT GGGAAATACA 001600 001601 TGGAGTGTGC TTATAAGAAG CTATGGTAGG CAGGATTTCA AGATGTCCTT GTGATCTCTG CCTCCTTGTG TTTCTCCCAT 001680 001681 GACTATGTCA TGTTCCACAG CAAAAGGGAT TTTGCAATGT ATTAAGGGTA CTGAACGGTT GACCTTAAGA TCGTGGGATT 001760 001761 ATCTGGGTGG GCCTAATTTC ATCACATGAG TCCTGTAAAA GAAGTGAATT TTCTCTATTT GGTAGCAGAA GAGGCAGTCA 001840 001841 GAGACATCTG AAGTGTGAGA GGGATTCAGT GCTGAAATGG AGAAGGTCAC ATGGTAAGAA CCTGAGAGTG GCTTCTGGTA 001920 001921 GCTGAGAGTG ATCCTTGGCA AGATAATGGA ACCTTAGTCC TAGAGCCTCA AGGAAATTAA TTCTGCTGAC AATCTGAGGG 002000 002001 AACTTTGAAG CAGATCTTTT CCTAGTTGAG CCTCCAAGTA AGGATTTAGC TAGCTAGCTG GTACTTTAAT TTGAGCCTTA 002080 002081 TGAGTCTCTG AGCAGAGGAC CCAGGGAAAT AAAGTCAGGC TCCTAATGCA TGGTGATGAT GACGTGATAA GTGTGTTTTG 002160 002161 TTAAGCTACT AAGTTTGTGG TAATTTTTAA TGTAGCAATA AAAAACTAAT GCAGAGAGTG AAAAGTGCTG TGTCTAAGAT 002240 002241 ATGTGGCAAA ATCAGGGTTA GTCCATGCTG GTGTCACCAT CCAAGGAATT GGATCTGGTG AGCAGAATGT GGCAGCAGGA 002320 002321 GGCAGTGTGA TGGTGACAGT CACAAGGAGA TGGGTTCTGG GGCTGCAGTT TGAGGGTTGA AGCAGCTGCT GTGGATTTAA 002400 002401 GGATCTGAGA ACTCAGGCAC AGAAGAGGAG GTCTGGCAAA ATCTGGGCAG ATTTTGCCCA AGAAATGGCC TGGGGTCAGA 002480 002481 GATTGAGTCT AAATCTCAGT GTCAAGAACT GAAGTTCACT TAATTCTTTT TTTTAAAGAA ACTTCTCGTT TAATAAACTA 002560 002561 GGCTGCTGAT TTTGAGATAT TTACTTATGA TTTTTTCATG GTTCTTCAGA ATTATCTCAG AGGGGTCTGA GAGGCTGAGC 002640 002641 AGACATAGCC TTAGTGACCC ATTTCTGTTT TAGCCAGGGC AGCCCTGCAT GTAGGTATTT ATATTTAGGG TTCCATATGA 002720 002721 CACTGCTCTT GGAA |
Predicted Small Protein
Name | NONHSAT101586_smProtein_764:880 |
Length | 39 |
Molecular weight | 4354.0414 |
Aromaticity | 0.0789473684211 |
Instability index | 83.4578947368 |
Isoelectric point | 9.96893310547 |
Runs | 7 |
Runs residual | 0.0115997229917 |
Runs probability | 0.0366543013602 |
Amino acid sequence | MFNTSIIRGGSSPLQDIRIYDPLSEHIRPFPLAITKRL |
Secondary structure | LLLLEEEELLLLLLLLEEEELLLLLLLLLLLHHHHLLL |
PRMN | - |
PiMo | - |