NONHSAT101840
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT101840 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1462 nt |
Genomic location |
chr5-:67725190..68055511 |
Exon number |
4 |
Exons |
67725190..67726404,67729296..67729412,67913310..67913342,68055415..68055511 |
Genome context |
|
Sequence |
000001 gcgaaaagaa agactgaaaa tgccatctga ccagttgaag ggaatcaggg gaagctttct aaaggaagtg gcatttggtc 000080
000081 tatacgttga ggggcaggta aatatctgag tggaatgact ggatcatatg atgaggaaac tgaggcacaa aaaggtgaag 000160 000161 tcctgagctc acagtcatgc aaccagcagg tggtgaaaca cacctccaag ctgcctgcct cctaagcATC AAGCTTTGTG 000240 000241 GCCCAGGATC TACTTCATGC TCCAAATATT CATGGACCTT CCCAGGACCT CAACAAAACA AAACCATGAA GAAAAACCTT 000320 000321 GACATGAACC CCAAAAAAAC CCAGTCAGCA ATATTTTAAG TTAAATTTTG AAACAAATCC AAACGGGTTC CTCCCCATAA 000400 000401 ATCTACCAGT AAATTGTGCA GAATCAGAAC TGAAGCCATG CCCTTTCTTA AAGTATTGAA TTAGAATAAA TGAGAACATC 000480 000481 TAAATATTTT CCAAATTCAT ATTCCAGTTA TAATATTCAA GTTTCTTAGT TTCTCTCTGT TCACATTCAA CATGAAATAG 000560 000561 TCCCATTAGT CAGTAGCAAG AGCTGCAACA TTTCTACAGG TACTAAAGGA TGTGATCAGA GCAGGGAAGA TGGCCAACAA 000640 000641 GATGATGCCA CTCTAGCGGG TGCCCATCCA AATCATAACC CATGAATACT GCGGCTTTAT TATCTTGGAC AACAGAAAGC 000720 000721 TGATCTTGTA ATTGGATGAT CACCCCTGCT TGCATGCTTT CGAGTAGTTA CGTATGACAA AAGGAGCTAC TGGTTTTGTG 000800 000801 ATGATGGGTT TCTGGGTAAA CCCTAGATGC AGAAGCAGCT TTTAAGCATA GCAGAGCAAG AGTCAAATGG TTCTGAAAAA 000880 000881 AGTTTTAACT CTGAGATGAC TTCTCCCCGC TTCTTTCACT CTACCCTCTC AATCCTAGAG CAAGTGAGCA GAGTAGGTAA 000960 000961 AGCTGTTTCC TCCAGAAAGA TGATCCATAT TTTAAACAGC TCTGTGAATG GGGCactaag actcagaaga tctggttttc 001040 001041 agttcgcatt ctgcctttaa ctggtcttga aagtttgggc aactcaatta tctcatggag tcagtatttg catctgtaca 001120 001121 gtggggatat gaatacctgt cttacctaca cggagctgtA AGAGCAACAG AATGTGAGCT GGCATGATGT TATTATATGT 001200 001201 ATCACCTTGG TTATTTTAAA ACATGCTTGA TGTATTAGCC TCTCTGTTTC CTCTTGAGTT TTCCTGCAGA GATGTCTTTT 001280 001281 AAACCAAGCA TCACTCTCCC AATCAGAGAC AGGGCTAACT AGATAGACAA ATGAGAAAGA GAAGTCGGGG ATGGGATGGG 001360 001361 AGCACAGCCA ATGCAGAAAC AGTCATGTGT ATTCTTCTAG ACAGGTGAGC AGAGACATTT TCAGGATTTC AGGGGGGCAG 001440 001441 GATGGAGACA TGGGGGAAGC TT |
Predicted Small Protein
Name | NONHSAT101840_smProtein_176:358 |
Length | 61 |
Molecular weight | 6501.4939 |
Aromaticity | 0.0666666666667 |
Instability index | 53.0816666667 |
Isoelectric point | 9.45672607422 |
Runs | 7 |
Runs residual | 0.0330673758865 |
Runs probability | 0.0479597244303 |
Amino acid sequence | MQPAGGETHLQAACLLSIKLCGPGSTSCSKYSWTFPGPQQNKTMKKNLDMNPKKTQSAIF |
Secondary structure | LLLLLLHHHHHHHHHHHHHHLLLLLLLLLLEEELLLLLLLLHHHHHHLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |