NONHSAT101952

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT101952

Source

NONCODE4.0

Same with

,

Classification

intronic(AS)

Length

1599 nt

Genomic location

chr5-:69351645..69353243

Exon number

1

Exons

69351645..69353243

Genome context

Sequence
000001 AGTAATTAAA AGTGTAGTAC TGACATCAAT ATACACTAAT AGACAATGTA ACAGAATTGA GAGTCAGAAA TAGCCCTGTG 000080
000081 ATATATGTGA CTGATTTTAA CTAAAGTTAC AAATGTGGTT TAATAGAGAA AGCATAGTAG TTTCAAGAAA TGGTGGTAAA 000160
000161 ACTATTGGAA ATCCTTATGC AAAAACAAAC CAAATTTCCA CCTACACTGA GCCACATATA AGAATTAATA CAAAATGGAT 000240
000241 TACAGACCTA AGTGTAAAAC TAAAACTCTA AACTGTGTAA AAAAAAAAAA GAGAGAAAAA TCTGTGATCA TGGATTGCCT 000320
000321 ATAACAAAAG AACAAACTGA AATGGCCTTG TTGCCTGGGG TGGCACCCGA GGTTCTTGGT CTCACGCTGA GGAAATCAAG 000400
000401 GACGCTGACA CACCAAGGGT GTGAGGCTAG AGCAGAAGTT TAATAGGCAA AAGAAAGAGA CTAGCTCTCT CCTGCAGAGA 000480
000481 GAGGTCCTGA AAAGAGTTCC CATTCCACAG TGAAATGCAA GCATTTTTAT AAATGAGCTA ATGGGAAGGG GGTAGCTTAT 000560
000561 CTACACATAG GGAGCAAAAA ACCAGTTAGG ACCAGGTGTT GCCATCTGCA CAGAGCGTGA ATCTCTGGCA TCCCCCACCC 000640
000641 CAACCTTTTA TTATGCAGGC AGGTCCTTGG CCTGAGCTAC TCCACATTGC TTATCTCTTT CCTATTGTGC ATGTGCTAAA 000720
000721 TAAGGGGAGG TGGAGCCACC ATGGTGGACA TGCCTGGCCC CAGGTACCCC TTTCTCTCCG TGCAGCTGCA GGCAACCCCA 000800
000801 ACAACTCACA ACATGCAAGC TTCCAGCTTC CTTATCTGAG TATGTACTAA GGTCCACTGT GTTTACTTCA CATACTGTGT 000880
000881 TTACTTCACA TACCCACCTT ACGTATGTGA AGCTTGCTGA TTACCCAGGA AGCTCCCCCT CTGTGCCAGA GCTGCTTCCT 000960
000961 TATACATGTT TACAGCCCGA TCTTCCAGGC TGCTCCTTGT TAGAAGAGAA GTGATTTCTT GGGCTGCTTT TTGTTAGAAG 001040
001041 GGAAGTTCTA CCGAGGACTC TGTCTAACTA TCGGCTTACC TAGTCTTTTT TTACCTCCTC TCTCAAAACC ATCAAAGAAA 001120
001121 AAACTGAAAA ATTAGATTTC AGCAAAATTA AGATTTTCTG TTCTTAAAAA GACGTTGTTA ACAAAATGAA AAACCAAAGT 001200
001201 GTAAACCGGG AGAAAATACA TGCAAGTTAC CTATCTGATA AAGATATTGT ACCCAGCAAA CATGAAGAAC TCTCAAACCT 001280
001281 CAACAACAAA AAAATTCAAT TAAAAGATGG GTAAGTTGGC CGGGTGCAGT GGCTCATACT TGCAATCCCA ATCTTTGGGA 001360
001361 GGCTGAGGCA GGAAGATTGC TTGAGCCCAG GAGTTCACGA CAAGCCCAGG CAACATAATG AGACCTTGTT TCTACAAAAT 001440
001441 TTTAAAAAAT TAGCCAGGCA TTGTGGCGTG TGCTCGTAAT TTCAGCTACT CAGAAGGCTG AGACAAGAAG ACTGAGCGCA 001520
001521 GGAGGTGGAG GCTGCAGTAG GCTGTGTGAT TGCACCACTG CACAACAGCC TGGGTGACAG AGTGAGACAC TGTCTCCAA
[back to top]

Predicted Small Protein

Name NONHSAT101952_smProtein_341:442
Length 34
Molecular weight 3518.1176
Aromaticity 0.0
Instability index 42.0484848485
Isoelectric point 8.00030517578
Runs 7
Runs residual 0.0279973649539
Runs probability 0.0312917959977
Amino acid sequence MALLPGVAPEVLGLTLRKSRTLTHQGCEARAEV
Secondary structure LLLLLLLLHHHHLLLLLLLLEELLLLEEEEEEL
PRMN -
PiMo -