NONHSAT102018
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT102018 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1917 nt |
Genomic location |
chr5+:70671613..70681621 |
Exon number |
4 |
Exons |
70671613..70671843,70672114..70673407,70681123..70681260,70681368..70681621 |
Genome context |
|
Sequence |
000001 GGTAGTAGAA CAATGGGATT ATGCTGTCAC AAAAAACAAA GAAAAAACAT AATTTCTTAA ATCATGGTCT GTCACTGAAT 000080
000081 CTGGTTATAA AACCTTATCT TGCACTAGAA GGATCTGTAG CTTTTCCAGC TGAGAATGGG GTTCAGGATA CCGAATCAAC 000160 000161 ACTAGAAAAG AGAGAAACTG GGGATGAAGA AAACTCAGCT AAATTTCCTA TAGGAAGGAG AGATTTTGAC ACACTCAGAT 000240 000241 GTATGCTGGG AAGAGTCTAC CAACGTTGCT GGCAAGTCTG ATTCTTTTTT TGATATGGAC CTGTTGGTCC ATATCATCTT 000320 000321 TTCAGAAGAA AAGCATTTAA TTGCCAATGG GAGGAGAAGC CCATAATGTT ACTGTAACTT GGGTATTATG TTAACTGTCT 000400 000401 GTTTTAAAAG AAAGTAGCGT TAAGATAGAT CAGTAACCAA AATCATAGGC TTTTTCTGTG CATTGAACTT TGTGAAAATG 000480 000481 CTGTATAATT TTGACTTACT AGTATTTTTG AACAATGCTT AACATACTAA CCTTACATAC ACTCTAGACC AAAATAAGGC 000560 000561 ATCATAATTT ACACCTTAAT CTCAAAAATT AAGCATGTCT TTGGTGAATG GTTTTATATA TACATAAACC TAAAACATAT 000640 000641 AAGACAAAAA TTTATGTTTG GAGCCTGTGT TCTGTAAAGA GAAGGTTGAT TTGTCTTTTA GCTATCGTAT TTGGAGTGGA 000720 000721 ACTATAATAC AAATGTATAA TAttcttttt tttttttttt ttgagatgga gtctcactct gttgcccagg ctggagtgca 000800 000801 atggcacgat ctcggctcac tgaaacctct gcctcccggg ttcaagcaat tccctgcctc agcctcatga atagctggga 000880 000881 ttacaggtgc ccaccaccat gcctggctgg tttttgtatt tttagtagag gcaaggtttc accatcttgg tcaagttggt 000960 000961 ctggaactcc tgaccctgtg atccacctgc cttggcttcc caaagtgctg ggattacagg cgtgcaccac tgagtccagc 001040 001041 cTATATTCTT GTTTATCAGT TCAAAAATGC TCTGCACTGT TTTTGACTCT TTAAAAATAA CTTAGATTCA AATTTATAGT 001120 001121 AGAAGAAAAA AAATCTTTCA GATAAGAGGT GTTCTCCAGA ATGGAAGAAC GACTTGGCAT GTAAGAAATA GCGTCAGTGT 001200 001201 CCTAATGCAT ATTGTGACTG TTTGCATATA CTTCTGTTTG TAAAAATATC GGTTTTATTT TCAGAGGATT TGTAAGAAAC 001280 001281 ATTTAAATTT TCATTGAAAT AAATGACAAG TCATACTGTC ACTTAAAAAA AAAAAAAAGA CCTTTGTCAA GGAGAGTGCA 001360 001361 GTCAACCAGT AAACTGCAGA TTCTCAGAAT GTTTATTGAC GTACTGATTA TTCATTCTGT TATACTCTAA CATCTGTATA 001440 001441 TTTTTACCAG TATTCTCAGA CCACTTCTAC CAAAACATAA ATCTGTGATT GTGATCTCTG AAAGTCAGTC CTTTTATCTA 001520 001521 CTCAATAACT GATCTGATAA TGTCAACTTT TGAAAACAGA TAGTTATGAC TCAAGGCTTT GAGAATGTAA AGAGACGCCC 001600 001601 TTCACATGTT GAGAAATGGC ACGATTTCAC GTTATCAGTG CAGTTCGGTT CTCAGGGGGA AAGCCCATCC GTACTACCAG 001680 001681 GAGACTGGAT CCGCAAAGTA GACACTTGGT CTCATGAAGC CACTGCTGGG CTCCAGAGAG AAGGAAAAAC TAAGCGGTTT 001760 001761 TAAAACCCCC GCCCTCCTTG GTTTACCTCC ATCATTAAAA AACAACAATG ACAACGACAA CAAAAAACAA AACTAAAACg 001840 001841 acttattgtt tattaattat gttgtggcag acaatatgct gaacattagg cataattaaa ttctttttaa aaattga |
Predicted Small Protein
Name | NONHSAT102018_smProtein_800:1093 |
Length | 98 |
Molecular weight | 10639.3389 |
Aromaticity | 0.0927835051546 |
Instability index | 64.0804123711 |
Isoelectric point | 8.80206298828 |
Runs | 16 |
Runs residual | 0.0334096983582 |
Runs probability | 0.0349264705882 |
Amino acid sequence | MARSRLTETSASRVQAIPCLSLMNSWDYRCPPPCLAGFCIFSRGKVSPSWSSWSGTPDPV IHLPWLPKVLGLQACTTESSLYSCLSVQKCSALFLTL |
Secondary structure | LLLLLLLLLLHHHHEEEEEELLLLLLLLLLLLLLLLEEEEEELLEELLLLLLLLLLLLLE EELLLLLLLLLLEELLLLLLHHHEEHHHHHHHHHLLL |
PRMN | - |
PiMo | - |