NONHSAT102159

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT102159

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

909 nt

Genomic location

chr5+:73618268..73624176

Exon number

4

Exons

73618268..73618833,73620256..73620343,73621637..73621762,73624048..73624176

Genome context

Sequence
000001 CAGTGCTTCT GTTGAGCACA GTGGTCACTC AAAAGAGGCA GAGTGAGTTC AGCCTATCAT TTGAGATCCG AGTATGATTG 000080
000081 GGGAAATATC CTGAAATAGT CTATGATTTG AAGAAATGGA TAGATGGCTA GAATAACATG CTAGATGGTA GTCAAGTTAC 000160
000161 TAACTGCAGA ATTGATTTGA TAAAATTCTC ATCGTGTCTC CTGACTTAGG AGAAATATTG GGTCTGATGA ATGGGTAAAA 000240
000241 TTCCCAGGTG AAAAGAATTT GGTCTGTAAG ATTTGGCAGC ACCCTGAGGT TTGCCATATC TGATGGCCTG GCTTTAGTGG 000320
000321 CAGCACCTAG TGAAGGCCCA GGTGTCCTTC TGACAACCTT TACCACCTAC CGTTTTGTCC TTACTTATGT TGAATCACTA 000400
000401 CACACAGGCT GTTGAATTCA GCTGTCTGTG GAGAAATTAT ACCAACCACA TGGTTAGACA GAAGGAATAC AATATATTGC 000480
000481 TTAATTTGTA TCTGAAAGCT AAGCAACATG GAAAAAAATC AAGCATGCTC AGTCACTTCC ATGAGGACAA ACGAAGACAC 000560
000561 TTCAAGataa tgattgatac aCCTCCCATG CCCCACCTCT CACCCAGGAC AGGATCGAAG TGTTGGGGGA GCCACAACCT 000640
000641 GCTTCACCTA GAAAGAGGAC ATTGACATGG ATCTGCCAGC TTTCTAAGAC TTTCCCCAGA TTCAAGTCCA GTCACATCAA 000720
000721 GTTGCCTTAT TAAAGGGTCT GCCCACTCAA AAGGAGAAAG TGCAAAAGAT GCTCAGCAAG GGTAGCAAAC GCAGTCAGAT 000800
000801 GATACTTCCT GACAGCATCC AAGAGCAAGT CTCACCACCA CATCTGTCAA TAAAAAAGAA AACAAGGAGC TGCCAATTTG 000880
000881 TCTATTTATA GGTGCCAATA AAATCCTGC
[back to top]

Predicted Small Protein

Name NONHSAT102159_smProtein_386:664
Length 93
Molecular weight 11051.6816
Aromaticity 0.0978260869565
Instability index 49.3445652174
Isoelectric point 9.88189697266
Runs 8
Runs residual 0.0482483578355
Runs probability 0.0443936583644
Amino acid sequence MLNHYTQAVEFSCLWRNYTNHMVRQKEYNILLNLYLKAKQHGKKSSMLSHFHEDKRRHFK
IMIDTPPMPHLSPRTGSKCWGSHNLLHLERGH
Secondary structure LLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLHHHHHHEE
EEELLLLLLLLLLLLLLLLLLLLLHHHHHLLL
PRMN -
PiMo -