NONHSAT102316
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT102316 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
1479 nt |
Genomic location |
chr5-:77651374..77656338 |
Exon number |
2 |
Exons |
77651374..77655809,77656038..77656338 |
Genome context |
|
Sequence |
000001 TCCTGGCCGC GGCGCAGCTC GCGTTCGCCA TCCCGTTCCT CCGGGCCCGG ATCCCACGCT CCGGGCTTTA GCTGCGACCG 000080
000081 AGTAGGCAGT CGGGGCGAAG GAAACGGGAA CTGAAAGCGA TGAAAAGCGT TCCACACGCC ACGAGCCCGC GGGATCCTCG 000160 000161 GAGAGTATGG AACCCTTCCC CTCCGCTCTC AGCCGGAGGC CAGCTGCGTC CAGCCGGGCT CGGTCTTCTG AACACCGATT 000240 000241 TCAAATCAGG TCCTCGGGGC CCAGCGTCAC TTAGGGAAGT GGTGGCATTT TGTGGTTGCT GCTAAATCAC GGAGAGCAGC 000320 000321 CTTGGCGCTG CCGGTCCCAA CTTGATCCAA GGAGCCTTGA GAAGGAGATG AGATTCAGTA CCAGGGGCCG GCCGTGGCTC 000400 000401 CCATCCTCCG GAATCTGCAA AATGGCTACT TCTTCAGAAA TAATGGGGAG AGGGATGGCA AGAGGCCAGA GATCAAGGCC 000480 000481 CTCGAGTATT AACTTGAGCA TTTGGGCACA AAATAGACAC TTTTGGATTT TCCCGTCTTT TCCAACACCA AGGATGAGAT 000560 000561 TATCAAAAGA TGTGTTAAAT TAATTTGTAC CGGCCGGGCG CGGTGGCTTA CGCCTGTAAT CCCAACACTT TGGGAGGCCG 000640 000641 AGGCGGGCGA ATCACAAGGT CATGAGTTCG AAACCAGCCT GGCCAATATG GTGAAACCCC CGTCTCTACT AAAAATACAG 000720 000721 AAATTAGCCG GGAGTGGTGG CGTACGCCTG TAGTCCCAGC TACTCTGGAG GCTAAGGCAG GAGAATCGCT TGAATCCGGG 000800 000801 AGGTGGAGGT CGCAGTGAGC CGAGACCGGG CCACTGCACT CCAGCCTGGG AGACAGAGCG AGACTCTGTC TCAAGAAAAA 000880 000881 AAAAAAATCA ATTTGTACCA TTCCTTGCCC CACCCTGCCG AACTTATTGA AAGAGCATCG CTTTCCTCAC TTTTCTCCTC 000960 000961 TAACAGAAAA GCACTTAGAT GAAGCTACAG GGAGCCAGAA TTCTTTTGAC TTGGTGGGTA CCGGAGGATT GGAAGAATCT 001040 001041 AGATTGAGTA TTCCTTGGCC TTTGGGGAGC TTGCTCTATG CAAAGTCACC CAGGAAATGA TACTCCCCCC ACTGTGAAAC 001120 001121 ACTAGCTAGA GATGATAGAC AAAAAGCACA TTTGTTGTAA TCTCCCTTTG ACGGGATTCA GGTTGGGATA GATGTCGAAG 001200 001201 CAGCTGCTTC TAGGTAGTCA ACGAAGATGT CAACTAGTAA ATGACAACAG ACAAGGATGA GCACAGCAGA GCTGTACGAT 001280 001281 TCTAGATATC AAAAAGAGCA AGCAGTCTGT TGTACTCACC ATCGCATCCT CAGCAGCTGC CCAGTGCCCG GTTTTAACTT 001360 001361 AGTGCTCAGT GTATGTGTCA GGTTTGAATC CCAATTCTGA TACTACCTGT GCTACTCTCT TCACCTCTCT GAGTCTGTAA 001440 001441 AGGATTATTT AAGAATTAAA TGAAACAACA TACAGAAAA |
Predicted Small Protein
Name | NONHSAT102316_smProtein_119:304 |
Length | 62 |
Molecular weight | 6414.3454 |
Aromaticity | 0.0491803278689 |
Instability index | 52.2737704918 |
Isoelectric point | 10.118347168 |
Runs | 8 |
Runs residual | 0.0216694931223 |
Runs probability | 0.0251722310546 |
Amino acid sequence | MKSVPHATSPRDPRRVWNPSPPLSAGGQLRPAGLGLLNTDFKSGPRGPASLREVVAFCGC C |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLLLEELLLLLLEELLLLLLLLLLLLLHHHHHHEEEE L |
PRMN | - |
PiMo | - |