NONHSAT102316

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT102316

Source

NONCODE4.0

Same with

,

Classification

antisense

Length

1479 nt

Genomic location

chr5-:77651374..77656338

Exon number

2

Exons

77651374..77655809,77656038..77656338

Genome context

Sequence
000001 TCCTGGCCGC GGCGCAGCTC GCGTTCGCCA TCCCGTTCCT CCGGGCCCGG ATCCCACGCT CCGGGCTTTA GCTGCGACCG 000080
000081 AGTAGGCAGT CGGGGCGAAG GAAACGGGAA CTGAAAGCGA TGAAAAGCGT TCCACACGCC ACGAGCCCGC GGGATCCTCG 000160
000161 GAGAGTATGG AACCCTTCCC CTCCGCTCTC AGCCGGAGGC CAGCTGCGTC CAGCCGGGCT CGGTCTTCTG AACACCGATT 000240
000241 TCAAATCAGG TCCTCGGGGC CCAGCGTCAC TTAGGGAAGT GGTGGCATTT TGTGGTTGCT GCTAAATCAC GGAGAGCAGC 000320
000321 CTTGGCGCTG CCGGTCCCAA CTTGATCCAA GGAGCCTTGA GAAGGAGATG AGATTCAGTA CCAGGGGCCG GCCGTGGCTC 000400
000401 CCATCCTCCG GAATCTGCAA AATGGCTACT TCTTCAGAAA TAATGGGGAG AGGGATGGCA AGAGGCCAGA GATCAAGGCC 000480
000481 CTCGAGTATT AACTTGAGCA TTTGGGCACA AAATAGACAC TTTTGGATTT TCCCGTCTTT TCCAACACCA AGGATGAGAT 000560
000561 TATCAAAAGA TGTGTTAAAT TAATTTGTAC CGGCCGGGCG CGGTGGCTTA CGCCTGTAAT CCCAACACTT TGGGAGGCCG 000640
000641 AGGCGGGCGA ATCACAAGGT CATGAGTTCG AAACCAGCCT GGCCAATATG GTGAAACCCC CGTCTCTACT AAAAATACAG 000720
000721 AAATTAGCCG GGAGTGGTGG CGTACGCCTG TAGTCCCAGC TACTCTGGAG GCTAAGGCAG GAGAATCGCT TGAATCCGGG 000800
000801 AGGTGGAGGT CGCAGTGAGC CGAGACCGGG CCACTGCACT CCAGCCTGGG AGACAGAGCG AGACTCTGTC TCAAGAAAAA 000880
000881 AAAAAAATCA ATTTGTACCA TTCCTTGCCC CACCCTGCCG AACTTATTGA AAGAGCATCG CTTTCCTCAC TTTTCTCCTC 000960
000961 TAACAGAAAA GCACTTAGAT GAAGCTACAG GGAGCCAGAA TTCTTTTGAC TTGGTGGGTA CCGGAGGATT GGAAGAATCT 001040
001041 AGATTGAGTA TTCCTTGGCC TTTGGGGAGC TTGCTCTATG CAAAGTCACC CAGGAAATGA TACTCCCCCC ACTGTGAAAC 001120
001121 ACTAGCTAGA GATGATAGAC AAAAAGCACA TTTGTTGTAA TCTCCCTTTG ACGGGATTCA GGTTGGGATA GATGTCGAAG 001200
001201 CAGCTGCTTC TAGGTAGTCA ACGAAGATGT CAACTAGTAA ATGACAACAG ACAAGGATGA GCACAGCAGA GCTGTACGAT 001280
001281 TCTAGATATC AAAAAGAGCA AGCAGTCTGT TGTACTCACC ATCGCATCCT CAGCAGCTGC CCAGTGCCCG GTTTTAACTT 001360
001361 AGTGCTCAGT GTATGTGTCA GGTTTGAATC CCAATTCTGA TACTACCTGT GCTACTCTCT TCACCTCTCT GAGTCTGTAA 001440
001441 AGGATTATTT AAGAATTAAA TGAAACAACA TACAGAAAA
[back to top]

Predicted Small Protein

Name NONHSAT102316_smProtein_119:304
Length 62
Molecular weight 6414.3454
Aromaticity 0.0491803278689
Instability index 52.2737704918
Isoelectric point 10.118347168
Runs 8
Runs residual 0.0216694931223
Runs probability 0.0251722310546
Amino acid sequence MKSVPHATSPRDPRRVWNPSPPLSAGGQLRPAGLGLLNTDFKSGPRGPASLREVVAFCGC
C
Secondary structure LLLLLLLLLLLLLLLLLLLLLLLLLLLEELLLLLLEELLLLLLLLLLLLLHHHHHHEEEE
L
PRMN -
PiMo -