NONHSAT102535
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT102535 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3844 nt |
Genomic location |
chr5+:83680613..83687401 |
Exon number |
2 |
Exons |
83680613..83680696,83683642..83687401 |
Genome context |
|
Sequence |
000001 ACTTGGAGAA CAATGAAGCG TGAGCTGGAG GGGAGCGAGC GGGCCGCCGG GAGCGCACTG TGTACAAACA GAGGCGGCGT 000080
000081 GCGTcctttg gaaggaattg ggccatgaga agagccctca tgaatgggat tagttccctt ataagaagag acaccaagga 000160 000161 agtgatcttt ctctgccctc tgctatgtga agacaaggta agaagacagc tatgaaccaa gaagcaggcc cttaccagac 000240 000241 accaaatctg ctggtgcatt gatcttggac ttctcagcct ccaggactgt gagaaataaa tgtttattgt tgaagccacc 000320 000321 cagtctacag taatttgtta tagcagctga aattgactaa gacaATTTAA AAAAATTAAT CTCATTGACT ATCAATTTGG 000400 000401 ATTCTGGAGC ATACCTGGAT TCAGGTATAC Attggatttg ggcatatctg aactggaata tggtctctat cattctaact 000480 000481 cctttaacta agttaaagtc tgttaagtgc caaacctcag tattctcatc tgtaaaatga aggtagtgat agtatcaaac 000560 000561 tgatagtggt aggttgtggt ggtgcacaaa agggcctagt ccagcactgg acacatggtg aTGATGATGA AAGATAATGA 000640 000641 TACTGATAAA TAAGAAGACA ATACTAATAT ACATAATTCC AAAAGAATTT TTCTTAATAC GTGATCCTCT TCACTCCCCG 000720 000721 TCTCCCATCC CCATTAAATT ACCTGGAATT TTTTAGTCCA TCTTTCAGTT TGTCAAGCAA CGAATAACAC TAAAGGTAGT 000800 000801 CTTTTTTATT ATCGTGTAAT TATGGAATTT TTTATTATTT TGCATTTTAA AACTTTGTTT TGAATTTCCA AAACTTTTTA 000880 000881 TTTAATATCT AAAATGTCTT Tctactaaaa ttttgctctc accgtctgag actcaaagca gaaaacccag ccaagaccat 000960 000961 ctcaaattct gacctacaga actgggagtt aataattggt gttgttttaa actgctgagt ctgtggtagt ttgctatgAA 001040 001041 GACTAATATa gttggttact attgttattc taatttcagg gagaaggaat aagtcatgga gcggttaggt taattgtcca 001120 001121 tcctctcaag ttagtaagtg ttggagccga taagtgaatc taaacagcgt gaatctaaag cccACTGCAT ACTTCTGcca 001200 001201 acaattatga agggtcgact gtatgctaag ctctaatgca tttttacata tattgcttta ctaaataggt tacctcaaca 001280 001281 acctttatga ggtaaatatt attattattt gcatttgact actgaggaaa ccaagaatca aaacctttaa gtacattgcc 001360 001361 caggatcaag gtggcggtga ggaatggagc caagagctag tatcagagcc ctgctctggt tccagtagtg attttcacag 001440 001441 ccattgtgtt aaaatgcctA TTTAGACAGT GGTCTAACTT ACTTTATTTA TTGACATTTT CAATTTCAAT GGTTATAATT 001520 001521 ATAATTGTCA TTTTTTAGTA CAGTTTGCAT TTCTCCCTGA TCTTCTTGAT GCATCATTTT AGAATATACA TTGCTGAAAT 001600 001601 GTAGAATTTC AAGCACATTT TAAATTCTCT ACAATATTTG CATAACTCAT AACACTTTTC TTCATTGCTC CCACAAGCAC 001680 001681 CAAGATAATT CTTTCCTCCA ACCCTCTGCT CATGCTGTTA TCCCCACCTG AAATGCCCTC TTACAAATCC TACTAGCTGA 001760 001761 ATTACAGTTT CCATTTAAGA CCTCCCCGAA TTATTCTAGC ACCAGAGAAC CATCATTTCT TAGAATTAAC AGTGCTTTTA 001840 001841 ATTTTTTTTC TAGTTGTTTC ACTTGTGTTA ATCTTATCTT TCCAAAGAAT TATATGGTTC TTACCATTTA GATAACTGCA 001920 001921 TGTCTTAGAC ATAGCTGAGT GTTATGTTTT AAATTTCTTC AGTCTTTCCA CTGTGAACAC TAAGGAAAAT TAATTTTTAA 002000 002001 GACTACAGAT TTGATACCAA ATCCCTACTT CCTAATATTT CACTGCCTGA TTCCCTAATG GATGCTCTTT CCAGAAAATG 002080 002081 TGTAGGGTCA TTAAGCAAGA GTGTACCTTT GCTTTCAGAA TTTGACCCTG GTAGGAGAAA TTTCTGGTGC TTCTAATTCT 002160 002161 TTCCCTCCAG TTTCCCAGTC AAACTCATTT CAGTGACTTG GTTTTTAGCT TCCTGAAATA TGTTTGAATA ATTAATATAT 002240 002241 ACACACAATA AAAGTTCAAA GGTACAAAAG AGTGTGCAGG AAAATAAAAG TTTTCCTCCT AATGACATTC CCTTCTTACA 002320 002321 CAAGGTTATT CCCTCAGGGC CTACTGCTGA TATCTAGTAG CTATGCTTGT GTATCCTTCT AAAGATACAC AAACACACCC 002400 002401 CCCtatatat gtgtgtttat atgtacttgt gcatacatgt gtgtatatat agtgtgtata tgtgtaCACA CATACTTTTT 002480 002481 ACAAAAGTTA CTAAATTATA CAATCATGGA TCTTGCTTTT CTTCACAAAC GTTCTGTGTT TTGAAATTGT ATCAAGgact 002560 002561 gcatagtatc tgtatatgta aatccttttt gatagacatt taagttgctt ccaatctttt gctattgcaa gcaatattac 002640 002641 atgaatacac attttgcaca tgtgtgcaag ataaacatat tagaatagat ttgttgaagt aacattgttg gtggggggaa 002720 002721 tgttcatata aaattgtgat agatattacc aatttgccat tcataaggta tctatgagtt cacccttcca cctgtactgt 002800 002801 atcagacagc ttgtctctct ttagtgtggc tgatatgatt cttaacagtc tttgaaagac aaaaaaaggt atctcatggt 002880 002881 tttgaacacc tattattttt actgggtttg agcaactttt cgcatattta aaaataatta ttttctttat gtgaactggc 002960 002961 atttcatgta ttttgctttt atttctactg atttgctaac ctttttattg attggtagga gatctgtata AGGAAATTCA 003040 003041 TCCATTTGGG GTCACATTAA TGTCAAAAAA TTTATCCAGC TGGTTCTTGT CCTTTAACCT AGTTTACACC TATTTGTTTG 003120 003121 ATTTTATTGT GCTAAAATTG CTAAAATATT TTATATTTGG GTGATGAaat ttatccacct ttgctttaag atttctaggt 003200 003201 tttgatattt gctaagatag gctttcagta ttctgaattt ataaacatat cttacagtgt cttatagtag ttttatgaat 003280 003281 atttcatgtg tgtttttaca attcttacca aattaaaatt tgagagatag tatttgttac tatcttactt gttctctcaa 003360 003361 aaactaccag taataacaaa accatatatt gaataaatcc atatatttca aattaatatg acatgccaac tcactcactt 003440 003441 agtcactata tatttggctc tactgcttgc ttttatagac tgttccattg ggttatctat tcgtgtgcca gtactacatg 003520 003521 cctaattgtt gttttaattt ttttttaata actactaggg taaacatcat ctacttcttt tttaaaaaat actccctgac 003600 003601 taatgtacat ttattttttt tcctacatga actttagagt gagcttgtct agttgaaaaa aacATAATAA ATATATTTAT 003680 003681 AGTATTAGTA TACCTATGTA TATATCCAAT TTTCTTCTGT GTTTCTCTTG TTAAGTTTCT ATTTAGATAT TTTATATTTT 003760 003761 TATATGCCTA CCTAAATGCA AATTTCTTCA TTATATTTTG TAACTGGCTC TTCTACATTT ATAGGAAGGC TATCTTtgtg 003840 003841 tgtg |
Predicted Small Protein
Name | NONHSAT102535_smProtein_2408:2602 |
Length | 65 |
Molecular weight | 7472.0191 |
Aromaticity | 0.15625 |
Instability index | 44.246875 |
Isoelectric point | 8.45379638672 |
Runs | 12 |
Runs residual | 0.03890625 |
Runs probability | 0.0385753400459 |
Amino acid sequence | MCVYMYLCIHVCIYSVYMCTHILFTKVTKLYNHGSCFSSQTFCVLKLYQGLHSICICKSF LIDI |
Secondary structure | LEEEEEEEEEEEEEEEELLLLEEHHHHHHHLLLLLLLLHHHHHHHHHHLLLLEEEEEHHH EEEL |
PRMN | LLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHH HLLL |
PiMo | ooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTT Tooo |