NONHSAT102535

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT102535

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

3844 nt

Genomic location

chr5+:83680613..83687401

Exon number

2

Exons

83680613..83680696,83683642..83687401

Genome context

Sequence
000001 ACTTGGAGAA CAATGAAGCG TGAGCTGGAG GGGAGCGAGC GGGCCGCCGG GAGCGCACTG TGTACAAACA GAGGCGGCGT 000080
000081 GCGTcctttg gaaggaattg ggccatgaga agagccctca tgaatgggat tagttccctt ataagaagag acaccaagga 000160
000161 agtgatcttt ctctgccctc tgctatgtga agacaaggta agaagacagc tatgaaccaa gaagcaggcc cttaccagac 000240
000241 accaaatctg ctggtgcatt gatcttggac ttctcagcct ccaggactgt gagaaataaa tgtttattgt tgaagccacc 000320
000321 cagtctacag taatttgtta tagcagctga aattgactaa gacaATTTAA AAAAATTAAT CTCATTGACT ATCAATTTGG 000400
000401 ATTCTGGAGC ATACCTGGAT TCAGGTATAC Attggatttg ggcatatctg aactggaata tggtctctat cattctaact 000480
000481 cctttaacta agttaaagtc tgttaagtgc caaacctcag tattctcatc tgtaaaatga aggtagtgat agtatcaaac 000560
000561 tgatagtggt aggttgtggt ggtgcacaaa agggcctagt ccagcactgg acacatggtg aTGATGATGA AAGATAATGA 000640
000641 TACTGATAAA TAAGAAGACA ATACTAATAT ACATAATTCC AAAAGAATTT TTCTTAATAC GTGATCCTCT TCACTCCCCG 000720
000721 TCTCCCATCC CCATTAAATT ACCTGGAATT TTTTAGTCCA TCTTTCAGTT TGTCAAGCAA CGAATAACAC TAAAGGTAGT 000800
000801 CTTTTTTATT ATCGTGTAAT TATGGAATTT TTTATTATTT TGCATTTTAA AACTTTGTTT TGAATTTCCA AAACTTTTTA 000880
000881 TTTAATATCT AAAATGTCTT Tctactaaaa ttttgctctc accgtctgag actcaaagca gaaaacccag ccaagaccat 000960
000961 ctcaaattct gacctacaga actgggagtt aataattggt gttgttttaa actgctgagt ctgtggtagt ttgctatgAA 001040
001041 GACTAATATa gttggttact attgttattc taatttcagg gagaaggaat aagtcatgga gcggttaggt taattgtcca 001120
001121 tcctctcaag ttagtaagtg ttggagccga taagtgaatc taaacagcgt gaatctaaag cccACTGCAT ACTTCTGcca 001200
001201 acaattatga agggtcgact gtatgctaag ctctaatgca tttttacata tattgcttta ctaaataggt tacctcaaca 001280
001281 acctttatga ggtaaatatt attattattt gcatttgact actgaggaaa ccaagaatca aaacctttaa gtacattgcc 001360
001361 caggatcaag gtggcggtga ggaatggagc caagagctag tatcagagcc ctgctctggt tccagtagtg attttcacag 001440
001441 ccattgtgtt aaaatgcctA TTTAGACAGT GGTCTAACTT ACTTTATTTA TTGACATTTT CAATTTCAAT GGTTATAATT 001520
001521 ATAATTGTCA TTTTTTAGTA CAGTTTGCAT TTCTCCCTGA TCTTCTTGAT GCATCATTTT AGAATATACA TTGCTGAAAT 001600
001601 GTAGAATTTC AAGCACATTT TAAATTCTCT ACAATATTTG CATAACTCAT AACACTTTTC TTCATTGCTC CCACAAGCAC 001680
001681 CAAGATAATT CTTTCCTCCA ACCCTCTGCT CATGCTGTTA TCCCCACCTG AAATGCCCTC TTACAAATCC TACTAGCTGA 001760
001761 ATTACAGTTT CCATTTAAGA CCTCCCCGAA TTATTCTAGC ACCAGAGAAC CATCATTTCT TAGAATTAAC AGTGCTTTTA 001840
001841 ATTTTTTTTC TAGTTGTTTC ACTTGTGTTA ATCTTATCTT TCCAAAGAAT TATATGGTTC TTACCATTTA GATAACTGCA 001920
001921 TGTCTTAGAC ATAGCTGAGT GTTATGTTTT AAATTTCTTC AGTCTTTCCA CTGTGAACAC TAAGGAAAAT TAATTTTTAA 002000
002001 GACTACAGAT TTGATACCAA ATCCCTACTT CCTAATATTT CACTGCCTGA TTCCCTAATG GATGCTCTTT CCAGAAAATG 002080
002081 TGTAGGGTCA TTAAGCAAGA GTGTACCTTT GCTTTCAGAA TTTGACCCTG GTAGGAGAAA TTTCTGGTGC TTCTAATTCT 002160
002161 TTCCCTCCAG TTTCCCAGTC AAACTCATTT CAGTGACTTG GTTTTTAGCT TCCTGAAATA TGTTTGAATA ATTAATATAT 002240
002241 ACACACAATA AAAGTTCAAA GGTACAAAAG AGTGTGCAGG AAAATAAAAG TTTTCCTCCT AATGACATTC CCTTCTTACA 002320
002321 CAAGGTTATT CCCTCAGGGC CTACTGCTGA TATCTAGTAG CTATGCTTGT GTATCCTTCT AAAGATACAC AAACACACCC 002400
002401 CCCtatatat gtgtgtttat atgtacttgt gcatacatgt gtgtatatat agtgtgtata tgtgtaCACA CATACTTTTT 002480
002481 ACAAAAGTTA CTAAATTATA CAATCATGGA TCTTGCTTTT CTTCACAAAC GTTCTGTGTT TTGAAATTGT ATCAAGgact 002560
002561 gcatagtatc tgtatatgta aatccttttt gatagacatt taagttgctt ccaatctttt gctattgcaa gcaatattac 002640
002641 atgaatacac attttgcaca tgtgtgcaag ataaacatat tagaatagat ttgttgaagt aacattgttg gtggggggaa 002720
002721 tgttcatata aaattgtgat agatattacc aatttgccat tcataaggta tctatgagtt cacccttcca cctgtactgt 002800
002801 atcagacagc ttgtctctct ttagtgtggc tgatatgatt cttaacagtc tttgaaagac aaaaaaaggt atctcatggt 002880
002881 tttgaacacc tattattttt actgggtttg agcaactttt cgcatattta aaaataatta ttttctttat gtgaactggc 002960
002961 atttcatgta ttttgctttt atttctactg atttgctaac ctttttattg attggtagga gatctgtata AGGAAATTCA 003040
003041 TCCATTTGGG GTCACATTAA TGTCAAAAAA TTTATCCAGC TGGTTCTTGT CCTTTAACCT AGTTTACACC TATTTGTTTG 003120
003121 ATTTTATTGT GCTAAAATTG CTAAAATATT TTATATTTGG GTGATGAaat ttatccacct ttgctttaag atttctaggt 003200
003201 tttgatattt gctaagatag gctttcagta ttctgaattt ataaacatat cttacagtgt cttatagtag ttttatgaat 003280
003281 atttcatgtg tgtttttaca attcttacca aattaaaatt tgagagatag tatttgttac tatcttactt gttctctcaa 003360
003361 aaactaccag taataacaaa accatatatt gaataaatcc atatatttca aattaatatg acatgccaac tcactcactt 003440
003441 agtcactata tatttggctc tactgcttgc ttttatagac tgttccattg ggttatctat tcgtgtgcca gtactacatg 003520
003521 cctaattgtt gttttaattt ttttttaata actactaggg taaacatcat ctacttcttt tttaaaaaat actccctgac 003600
003601 taatgtacat ttattttttt tcctacatga actttagagt gagcttgtct agttgaaaaa aacATAATAA ATATATTTAT 003680
003681 AGTATTAGTA TACCTATGTA TATATCCAAT TTTCTTCTGT GTTTCTCTTG TTAAGTTTCT ATTTAGATAT TTTATATTTT 003760
003761 TATATGCCTA CCTAAATGCA AATTTCTTCA TTATATTTTG TAACTGGCTC TTCTACATTT ATAGGAAGGC TATCTTtgtg 003840
003841 tgtg
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Predicted Small Protein

Name NONHSAT102535_smProtein_2408:2602
Length 65
Molecular weight 7472.0191
Aromaticity 0.15625
Instability index 44.246875
Isoelectric point 8.45379638672
Runs 12
Runs residual 0.03890625
Runs probability 0.0385753400459
Amino acid sequence MCVYMYLCIHVCIYSVYMCTHILFTKVTKLYNHGSCFSSQTFCVLKLYQGLHSICICKSF
LIDI
Secondary structure LEEEEEEEEEEEEEEEELLLLEEHHHHHHHLLLLLLLLHHHHHHHHHHLLLLEEEEEHHH
EEEL
PRMN LLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHH
HLLL
PiMo ooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTT
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