NONHSAT102585
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT102585 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1469 nt |
Genomic location |
chr5+:86415965..86543833 |
Exon number |
4 |
Exons |
86415965..86416011,86433271..86433470,86539763..86540024,86542874..86543833 |
Genome context |
|
Sequence |
000001 CCTTGCCTTC CACCATGATT GTGAGGCCTC CCCAGCCATG TGGAAATCAT GTTCCAGAAG GCCAGGGCGG TCGGTTCTGC 000080
000081 TGCACAAATG AGGTCAGAGC AATCAAGAGA GCCAAGGAAG TCCTACTTAT CTGGATTAAA TAACTCAATC TACAAACTAC 000160 000161 TCAACTTTAA TATAAGGTGG AAAATAGGAT TTCAAAAGAA AAGAAGAAGG AGAAGAACAA GGACAAGAAA CTGAGTTTTG 000240 000241 GCAGAAGTCA TCCAGGGACC AGGACTAAAG GAGACTGCTG ACTTGCATAC ACATCTTCCA AGAACACACT GGGCATCAAC 000320 000321 ATCCAACAAG CGAAAAAAGG AAGGAGCATG TAGGATGCCA TGGACCTGGT CTAAAAATGA CACACAGTAC TTTCTCTAAT 000400 000401 ATTCCACTGG CTGGATTTCA TCTTAATGGG TATACCTAAC TGCAGGGAAT TCATACCTAA CTGCAGCGAA TTCATACCTA 000480 000481 ACTGCAAGGA ATTCATACCT AACTGCAAGA AGTCAGAGAG AAGCATATGA CACGTTCAGA AGAAAGGAAC TGCCATATTG 000560 000561 TGGACAAGGT CACATGGCAG GGAATGGTGG GCAGCCTCTA GAAGCTAAGA GCAACCCCCA GCTGACAGCC AGCAAGACAT 000640 000641 CAGAGACTTC AGTCCTACTG CCCCAGAAAC TGAATTCTGC CAACAACCTG GACGAGCCTG GACAGAAACC TGAGCCCAGA 000720 000721 GTGAGAAATG CAGCCCCAGC CAACACCTGG ATTTCAGCCT GATGAGACCC TGAGGAGAGA ATCCAGTCAT GTTGCATCTG 000800 000801 GAATTCTGAC CTAGAGAACT GTGAGTTTGT AAATTTGTGT TGTTTTAAGT TGCTAAGTTT GTGAAAATTT GTGATGCAGC 000880 000881 AATAGAAAAC TGATATCCTG TGCCTGGCGT GGTGGGTCAT GCCTGTAATC CCAGCACTTT GTGGGGCTGA GGCGGGCAGA 000960 000961 TCACAAGGTC AGACGTTCGA GACCAGCCTG GCCAACATGG CGAAACCTCA TCTCTACTAA AAATACAAAA ATTAGCCGGG 001040 001041 CATGGTGGCA CGCACCTGTA ATCCCAACTA CTCAGGAGGC TGAGGCAGGA GAATCAATTG AACCTGGGAG GCAGAGGTTG 001120 001121 CAGTGAGCCG AGATTGTGCC ACCATACTCC ATCCTGGGTG ACAGAGTGAG ACTCCGTCTC AAAAAAAACA AAAACAAACA 001200 001201 AACAAAAAAA ACTGATATCC TGTCCTATAG TAGGCATTTA ATAAATATAT GTGGAATGAA TGAATGAATG AATGAAAGAA 001280 001281 ATTTTGATAT GTTACATGGT AAAGGTAAGA TAATTATAAG AAAGGCAAAA TATGAAACTA TACTTGTGAT TTTAGAACTA 001360 001361 AGTTCTGGAT AGTTTTAATA ACCACATATC TTGTATTATT TATATACATT CATGTGACAT TAATATATCA TCTTTAAATA 001440 001441 AAAAATACTA AAATAAAAAA CAATACATG |
Predicted Small Protein
Name | NONHSAT102585_smProtein_14:142 |
Length | 43 |
Molecular weight | 4745.6236 |
Aromaticity | 0.047619047619 |
Instability index | 41.830952381 |
Isoelectric point | 9.49639892578 |
Runs | 8 |
Runs residual | 0.0143158529234 |
Runs probability | 0.0101461755874 |
Amino acid sequence | MIVRPPQPCGNHVPEGQGGRFCCTNEVRAIKRAKEVLLIWIK |
Secondary structure | LEELLLLLLLLLLLLLLLLEEELLLHHHHHHHHHHHHEEEEL |
PRMN | - |
PiMo | - |