NONHSAT102641
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT102641 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1043 nt |
Genomic location |
chr5+:87588450..87589492 |
Exon number |
1 |
Exons |
87588450..87589492 |
Genome context |
|
Sequence |
000001 AACTTTTCAT GGTATGAGCT GTTTTATAAT CTATAATATG GAATGTTTCT CATACGAATG TTTTTCTTAT TGAAGAATGC 000080
000081 CATAGAAATA AGGGTGTGAG GTATACTTAC TTGACAGGAG AATTTTACTC CTTTTATTTT ATTTACTTAt ttatttttaa 000160 000161 gacggagtcc tgctgtgttg tccaggctgg tcttgaaccc ctggactcaa acgatctttc tccttggcct cccaaagttc 000240 000241 tgggattaca ggtatgagct acagtgcccT GAGAGTCCTT TTTAAAGTAG TGAATGCTCA AACATGGAAT TAAATTTAGG 000320 000321 CAAAGCTCAC TTTTATTTAT ACATAAAACA ACTTcagcca tgtacctcat aacgatattt tggccaatgt ctgaccttat 000400 000401 atacaatggt tgtcctgtac gattataatg aagctgaaaa ttttctattg cctagtaaca ttgtagtaat tgtaatgtag 000480 000481 cacaacctat cacacgtgtt tgtagtgatg ctggtgtaaa caaaccgact gcattgccag tctagtataa aagtctagca 000560 000561 cacacaatta tccacagtat ataatagttg ataatgataa taaacaactg tcactggctt atatatttgc tatactatac 000640 000641 tttttatcat tattttagag tatatttaga gtatattaag cagccttagg caggtctttc aggaggcatt ccagaagaag 000720 000721 gcattgttat cataggaggt gacagctccc tgtgtgttgt tgcccctgaa gaacttccag tgggacaaga tatggtggtg 000800 000801 aaagacagtg atattgatga tcttgaccct gtgtaggctt aggctcatgt gtttgtgtct tcattctttt tttttttttg 000880 000881 agatggggtc tcgcactgtt gcccaggctg gagtgcagtg gcgcgacctt ggctcactgc aagctccgcc tcctgggttg 000960 000961 atgccattct cctgcctcag cctcccaagt agctgggact acaggtgccc accactacgc ctgactaatt ttttgtactt 001040 001041 tta |
Predicted Small Protein
Name | NONHSAT102641_smProtein_293:427 |
Length | 45 |
Molecular weight | 5172.2064 |
Aromaticity | 0.136363636364 |
Instability index | 47.5477272727 |
Isoelectric point | 9.86260986328 |
Runs | 7 |
Runs residual | 0.00401069518717 |
Runs probability | 0.0493729023141 |
Amino acid sequence | MLKHGIKFRQSSLLFIHKTTSAMYLITIFWPMSDLIYNGCPVRL |
Secondary structure | LLLLLEEELHHHHHHHHHHHHHHHHHHHHLLHHHHHHLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooooo |