NONHSAT102667
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT102667 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3558 nt |
Genomic location |
chr5-:87960263..87969146 |
Exon number |
3 |
Exons |
87960263..87963409,87966854..87966903,87968783..87969146 |
Genome context |
|
Sequence |
000001 ACTCTCCACT CCGAGGCTCA GGGAGCAAGT GCCTGGCATG GGGGGTAAAA GTTGGCTTTT TTTTTACTCC TTGGTCTTTT 000080
000081 GCGCCCTTCT CCCTCTCCCC AGAAGGGAAG ACCCATTTAA ACTATTTTAG ACGCAATCAA CCAAGAATCA CCATGTGGAA 000160 000161 TTGAGCGGCA GTTTTAAATG TGTTGAGCAG GGGAGAGGAA TGATGAGAAA AACATTTTTT TTTTTTTTTT TGGAGACGCC 000240 000241 GAAAGAAGCC TGTTTGTGTG CTGCGGCCGT GCTGTGACTT TGGATCTTGT CTTTCAGCCG GCGCCTCGGT TCCTGCCCAG 000320 000321 CTGGATTTGG GGGGCAGCAT TGCCTGGCGC AGGGAGATCA AATGAGACTG CAAAGAAGCA TAAAATGAAT AGACAATCCA 000400 000401 ACCAACCAAA GACCGGGGGC AGCAGCAGGC CAGCAAGACG GCATCTTCTC CTTCCCAGCC TAGAAGCCCT GTGAAATCGA 000480 000481 GGATCTTCCC CCTAAAACAC ATACACACAA GATATGTGCA ATCAAGCTGC CACCGCTTGG TAAAAAGCCA TGGTGCCTAA 000560 000561 CCAAAAAGGA TCAGGAACAG ATCCTTGAAT CAGCTGTCAC TTCTATAGAA TGGGATTTTT TTTTCCTTCC TCCTTAACCT 000640 000641 GCGCTGGAAA TTGCCGTTGG CTTTATACAT CTCTATAGAG AGAGGCTAAA GAGTCTTGCG TGAGAAAGAA GCAATTTACA 000720 000721 ATGCAAATAG AGGCCTGTGA AGGGACGGAT GCTGCTGCTC ACTCGTAACA GCTTGCTGCA CCTTAATAGC TGGTTTTATT 000800 000801 TTCTGATATT AATAGATGAA TTGTTGGCTA ACGCTGCCGG AGATTACTTG CTGAAAGGAA AAAGAAAAGT TCGGAATAAA 000880 000881 CTCTGAAGGC AACAGATCTC GTTTGGATGT TTTAGCCGCG CACACACACA AACAGAAACC AGGTCATATT TACATAAAAG 000960 000961 GAGGAATCTT AAGCGCGGCA AGTATCCTGG ACGACCACTC TTCGGTACTG CCAGAAAGGA TCAGGACCTG GAGTCTGGCA 001040 001041 AGAGGAAGAC AGAGGCCTGT GTGGGAAGCG AGTTGTTATC TTTGGTTATC TAGCTGTATG AGTGTATTGG TCTTCATAAA 001120 001121 GCTAGATAAC CGAAAGTAAA AACTCCTTCA AGATCGCCGG GGAGCGTGTG AGAATGAAAG ACTACAGCCG AGAGACAGTA 001200 001201 AAAACCAGAA AGGTCAGGAA TACTTATTGA ATCTAACTTT GTTTTTGTTT TGTTTTTTTC CTTATGATTA AAGGTGGGAT 001280 001281 GAGAGAAAAT TAAATGACAC ACACATGCTA AAATATCAAG GTTCCAGATA TGTCTTGAGA GGGGTTGTTG CAGCTGCAAA 001360 001361 GGAGAAGTGT ATAGTGATAA TGAGTAAAGA TGCATGTGCA GTTTGTTCTA TTTTAAGGCA AAAGTTATAT CAGGGATTTT 001440 001441 TTTCTTAGAA AGGTGTTGCA GAGATGTCTG GTACCTAGTT TAAAAATGAT TCCATAATAT GTAGACTTGG GCAGTTCCTT 001520 001521 TGGGAGGCAC CTCCCTCTCA AAATTTGAAG ATTGTGCTTG GAAATTACTT TACATGTATT TGGGCTGTAT GTCAATTTGT 001600 001601 ACGAAATTAG ACTTTCAGAA AAGTTTATAC TGGAAGGTTA ATAATTTGTA TCTACTGAGG ACTTAGAGCT AGCAGGCAAA 001680 001681 ATGAAAAAAA AAAAAAAAAA AGCAAGGGCT GATTTTTATT CTTCTATTCA AAATACAAGG ACAGATGCTT CTCTGTTCCA 001760 001761 AGAGGGTTTC CTTGAGGAAG CTACTGAAGC AGAAAGACAT GATGGAGACG AGATCGCCTC CCCTCTTGTC AAAGTGTTAA 001840 001841 AAAAATGTTC TGTCTTACTC TGCGCCTAGC ATTGGAAATG AAAGTGACAT TTACGCCACA ACCCACGTGT GCGCCTCCTC 001920 001921 TCTTTTTGTT TAAGGATGAT CAGGTCTATC CAGGAAACAG CTCTGGCATC CCAAACTGAA ATAATTAGGA CGTATATAGA 002000 002001 CCTGACAAAA ATGGAAAGGG GGTGGGGAAT CTGAGGGTCT GTCTTGCCTA ATTGATTCCG CTAAACGGAA TGCAGGAGAT 002080 002081 GTGAACGGCA GGACGCTCCG ATTCCCACGC TCGGGGGCAA GTGATAAAGC GGGGCCGGGC AGCCTATGAC AGACAGCCCT 002160 002161 GTTGGGGGGT GGGGGTATGA AAAAAACATC AAGTGCACAC ACCATACTCA TCTCCATCGC TTAAGAAAGT AAAGGCATTT 002240 002241 CCCACCCACA GCCATCTGCA GCTTCCCAAA TGGCAGCACC AACTGGTCTG TAGCTGCTAC ATAGTCTGCT TCTGTTAATT 002320 002321 TTTTAACCAC TGTTTAATCT GGCCATAATT AAGTTTGGCT TTCTTCGTTG TTTGAGATTT TCAGAATTCA AGGCAAGCTA 002400 002401 GTAGAAAGCA ATTCCAAGAA AGTCCCATGA CTGCCTGCCC CTAATGTCAA AATCTCAGTC CATGAGATTA TGGCCTTGTG 002480 002481 ACCACATTTT TGCTTTTGTT TTGGGTGGGC AAATGTGTAT AGAGATAAAA TACATATCTC TATATAACAG TCGTTATTAT 002560 002561 AATTTCATGA GGCTTTTTAC CTCTTAACAT GATACATCTA GGAACTTGGT CTAATTGTGC TAGTAGATAT ACACTAGAAG 002640 002641 TAAAACTATA AAGTCATTAG CCTGTAGAAA GTTGATTATG ATAACAATAT GATAAAAAGT TTGTTTTGGA ATAGTCTCAG 002720 002721 CTAGATGGGT CTAAATAGCC ATTTTAATGT AATCTAAAAA TAACACTATG CCTAGCAGAA ACTTTGGCGC TTTGGAGGTC 002800 002801 CCCATTGTCG CCTTTTCATA AAAGTCCTTA AGTTTTCCAT ATGTCACCAA GCAAACATTT GTATAGGCAT TTACACAGAA 002880 002881 ATATAACCAT TGCAATTAGA AAATATCCAA AATAGCCTGT TATCTTCCAC GTGGCCTAGA TTATTGACAA TCCCAAATAT 002960 002961 ACAATTTTTC TTTAAAAGTA GTACAATTTC CTTTGTAGCT TCAATTCCTT ATATGACTTC AGACTGGAGA AGCCTGTTAA 003040 003041 ACCACTGTTA GTTTCAGTTA GAAAGTCTGA GAGACTTTAT ACATAAATTC TCAATTTGGC TGCTGTACAC GTGCCAGAGT 003120 003121 TTTACTACTG TAGTGACCGT TGAGAAGACC CTTGTTTATT TACATTTGAA GCACTGTTTG TGCAAACAAC CTTTCATTGT 003200 003201 TAAGTGCCTG TATTCCTTTC ATTTACTTCA TGTCCAGGGG TGCTATTTAC CTAGAACCAT TGTCTACTAC AATTAACATT 003280 003281 TACATTACAA AGTGTGTGGT TTTCTTTTTC AAGGAGGTTC AATTAAGGCA ATAAGATGTT TGCTGGAGAA ACCTATTGTT 003360 003361 TACTGAAAGC ACTCAATGAA GTCAAATTAC TGAAGCTTTT GCCTACATCT TGGTCTTTTA TGTAAATATG TTAAATATAA 003440 003441 CATCTAAGGA AAATAAACAA TATTATAATT ATGTGTTTGC CATTGTCATA TCAAACTTGC TTTGTATCAT ACTAATGTTA 003520 003521 CATAACTTAT CGATCAATAA AAATACATTT CAATGTTA |
Predicted Small Protein
Name | NONHSAT102667_smProtein_1304:1447 |
Length | 48 |
Molecular weight | 5274.3216 |
Aromaticity | 0.106382978723 |
Instability index | 40.1446808511 |
Isoelectric point | 9.66351318359 |
Runs | 7 |
Runs residual | 0.0173404255319 |
Runs probability | 0.0251974663739 |
Amino acid sequence | MLKYQGSRYVLRGVVAAAKEKCIVIMSKDACAVCSILRQKLYQGFFS |
Secondary structure | LLLLLLLLHHHHHHHHHHHHLLEEEELLLHHHHHHHHHHHHHHLLLL |
PRMN | - |
PiMo | - |