NONHSAT102669
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT102669 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1664 nt |
Genomic location |
chr5-:87960264..87980753 |
Exon number |
4 |
Exons |
87960264..87963409,87966854..87966903,87968783..87968846,87980475..87980753 |
Genome context |
|
Sequence |
000001 CTCCATCCCC CTTTTACTTC TCTCTCCCCC GTCTCTCCTC CCTCCCGCCT CCTTTCTCCC TCTCCCCCTC CCTCTCTCCT 000080
000081 CTGAATAAGC AAGCTTTTGC CTCTAAAAGT CACAAGTAAT CCTCGTGTGT GACAGAGAGA GAGAGAGAGA GAGAGAGAGA 000160 000161 GAGAGAGAGA GAAACGAGCT GGCGGAGAGG AGCAGAAGGC AGGAGGGGAA ATCTGGCACA ACGGCTGGGA GAGGAAACTT 000240 000241 GATGCTTCTG GGCCACCATT TGCCAGGGCC TCGCTCGAGC CGGCGCCTCG GTTCCTGCCC AGCTGGATTT GGGGGGCAGC 000320 000321 ATTGCCTGGC GCAGGGAGAT CAAATGAGAC TGCAAAGAAG CATAAAATGA ATAGACAATC CAACCAACCA AAGACCGGGG 000400 000401 GCAGCAGCAG GCCAGCAAGA CGGCATCTTC TCCTTCCCAG CCTAGAAGCC CTGTGAAATC GAGGATCTTC CCCCTAAAAC 000480 000481 ACATACACAC AAGATATGTG CAATCAAGCT GCCACCGCTT GGTAAAAAGC CATGGTGCCT AACCAAAAAG GATCAGGAAC 000560 000561 AGATCCTTGA ATCAGCTGTC ACTTCTATAG AATGGGATTT TTTTTTCCTT CCTCCTTAAC CTGCGCTGGA AATTGCCGTT 000640 000641 GGCTTTATAC ATCTCTATAG AGAGAGGCTA AAGAGTCTTG CGTGAGAAAG AAGCAATTTA CAATGCAAAT AGAGGCCTGT 000720 000721 GAAGGGACGG ATGCTGCTGC TCACTCGTAA CAGCTTGCTG CACCTTAATA GCTGGTTTTA TTTTCTGATA TTAATAGATG 000800 000801 AATTGTTGGC TAACGCTGCC GGAGATTACT TGCTGAAAGG AAAAAGAAAA GTTCGGAATA AACTCTGAAG GCAACAGATC 000880 000881 TCGTTTGGAT GTTTTAGCCG CGCACACACA CAAACAGAAA CCAGGTCATA TTTACATAAA AGGAGGAATC TTAAGCGCGG 000960 000961 CAAGTATCCT GGACGACCAC TCTTCGGTAC TGCCAGAAAG GATCAGGACC TGGAGTCTGG CAAGAGGAAG ACAGAGGCCT 001040 001041 GTGTGGGAAG CGAGTTGTTA TCTTTGGTTA TCTAGCTGTA TGAGTGTATT GGTCTTCATA AAGCTAGATA ACCGAAAGTA 001120 001121 AAAACTCCTT CAAGATCGCC GGGGAGCGTG TGAGAATGAA AGACTACAGC CGAGAGACAG TAAAAACCAG AAAGGTCAGG 001200 001201 AATACTTATT GAATCTAACT TTGTTTTTGT TTTGTTTTTT TCCTTATGAT TAAAGGTGGG ATGAGAGAAA ATTAAATGAC 001280 001281 ACACACATGC TAAAATATCA AGGTTCCAGA TATGTCTTGA GAGGGGTTGT TGCAGCTGCA AAGGAGAAGT GTATAGTGAT 001360 001361 AATGAGTAAA GATGCATGTG CAGTTTGTTC TATTTTAAGG CAAAAGTTAT ATCAGGGATT TTTTTCTTAG AAAGGTGTTG 001440 001441 CAGAGATGTC TGGTACCTAG TTTAAAAATG ATTCCATAAT ATGTAGACTT GGGCAGTTCC TTTGGGAGGC ACCTCCCTCT 001520 001521 CAAAATTTGA AGATTGTGCT TGGAAATTAC TTTACATGTA TTTGGGCTGT ATGTCAATTT GTACGAAATT AGACTTTCAG 001600 001601 AAAAGTTTAT ACTGGAAGGT TAATAATTTG TATCTACTGA GGACTTAGAG CTAGCAGGCA AAAT |
Predicted Small Protein
Name | NONHSAT102669_smProtein_1286:1429 |
Length | 48 |
Molecular weight | 5274.3216 |
Aromaticity | 0.106382978723 |
Instability index | 40.1446808511 |
Isoelectric point | 9.66351318359 |
Runs | 7 |
Runs residual | 0.0173404255319 |
Runs probability | 0.0251974663739 |
Amino acid sequence | MLKYQGSRYVLRGVVAAAKEKCIVIMSKDACAVCSILRQKLYQGFFS |
Secondary structure | LLLLLLLLHHHHHHHHHHHHLLEEEELLLHHHHHHHHHHHHHHLLLL |
PRMN | - |
PiMo | - |