NONHSAT102832
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT102832 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2225 nt |
Genomic location |
chr5-:94043230..94046398 |
Exon number |
2 |
Exons |
94043230..94043272,94044217..94046398 |
Genome context |
|
Sequence |
000001 AAGAGACAGG TTGGTTAAAA ATCACAACAG TATAAAGATT TAGGTCCACC TGCAAAATGT ATTTTTCTTA TCTGGCACAC 000080
000081 TAGGCTTCAT CATACTATAA ACATGTTAGT TGTGCAGATT CTTCATATAT CAAAGTGTAG CTTTGTCTAG ATATCCCTCT 000160 000161 GATTTATTTT CACCATTTAT ATACAAACAG AGGCATTTCA ATCCATATGG TGCATTTAGG AAAATATGCT TTTTTTGCTG 000240 000241 TTGTATTTTA TCTTGTGGAA TATATGTAAA CATGGTACTA TACATGGCTG CCTGTTTAAG AGGTCACCTT TAGCATTCGG 000320 000321 GAAAAGGGTC CTTGGTACTT GCAGGTTCCT TAGGAACAAA AGGATCCTTT TATGTGTACT AAACAAGAAT GTTTCTATAA 000400 000401 AGACCTACAT CAAAGGTGAT TTTTTTCGGT CCTAATTTTT AATGCAACTA TGCTGCATGC CAACGATTCT TATGCACCTG 000480 000481 GGCTCCATTT AGGAGACTGT CAGTTGCAGC ATTCTTCTTT TTTTCTTTCT TTCCTGACAA AATTCTTGGT TTGGAAAACA 000560 000561 ATTTTCAGTC TCTAGGATCT ACTATAACAT TAATAATATA TAAACTAGAC GGGGTAGAAG AAGAATTCTC TACTTACCCC 000640 000641 TCACCTGCTT ACACATACAC CTAAGACTGC TAAAACAAAT CAAATGCAAA GAACCAAAAT GAGTCTTAGC TTCGGAAAGC 000720 000721 ATGTGCTTAC ACTGAAAGCA AAATTCTTTT CAAGGCTTTT GAAGAAATAT GTTGGAATAA AGTGAGTTCA AGTCTGATGA 000800 000801 CTCCAAGCCC TCCGCTTTTA AGATACTTTG TCCCTATTCT TTTTGGCCCA ACTTGCCATA TATTGAGGAA GCCCTCTTAC 000880 000881 CCCTTATTAT CACTATAATT ACCCTTTCAG TCTGGGTGAG AGGTGGGGGA AATGGTAATT ATTTTTTCCT TTCCTAATTT 000960 000961 CTATAATTCA AAGATATTCA ATTTAGACAG CACTTTCATT ATATAAGGGA AGAATAATTT CCACTATGTT CTTGCTTCCT 001040 001041 ATTGTATGTT CATCTTTCAT TTCTTCCTGA TAGTTAAAAC AGATGCTGCT TTATAGAAAA AATTAGGGTA GAATGTCATG 001120 001121 TCGTGGCAGT TTATTAACTC TAATCTACCT AGGGTCAGAC CTGCCTTGGC TTGTGGAGTC ATCTCTGTTG CAATAGGTGG 001200 001201 TGGTGAATGC CCTGTTCTCC CAGGTTTACA GAAACTGGAG CCCAGGGCAG ACATCTAGCT GTGTAACCTG CAGTGCCCTC 001280 001281 ACTGACTAGC TGTCTTAAAA GTAACTTTGC AGAATGTGTT TGGGCCTCTT GTTTCATTAA ACAAAATAAA ACAAGAACAG 001360 001361 TATTCCTTTA GTGGTAGGTG ATTGCTGAAA TATTAGCCAG AAATTTAAGA CATAGGTCTT ACATGAGGAG ATGGACCAAA 001440 001441 ATCAAGATTC CAGAAGTTTA TTCTGCATGA ACTCCCTGAA GAGGAGCCAA GATGCTCCAG TGTATGGCTC AGTTTTTACC 001520 001521 AGTTTGTTGA TTTCATGTAA AGGTGtttat ttatttattt atttttaCAA AGTTGGGGGC AAATCTTTTC ATTTCAGGTT 001600 001601 TGAAAAAAAT AAACATCATG TGTCTTCTAA ACATTTAGCT GGCATTAACA GCAGCACACA CCCCCACCTC CAAAAAGGTG 001680 001681 CATCTTTTGG AAAAGGGGAA ACCAAATAAG TTAGACATCT TGCCTTAACA ATCTTAACCC AAAAAGTAGG AAAGCAAGTT 001760 001761 TCATCATAAA TGAAACACTA AAGCAAGGCT TCTAAGTAGA CTGTAACACA GGGGGAAAAA AAACCAAGAT ATTGCTAATT 001840 001841 AACCCCCAGG GCAGCTCCTT TATTTCCCAC ATAGAAAGCC TTTCCTGCTT GGAAGAAGCT ACTAAGGTAC AAGTAAAAAA 001920 001921 AGCAGTTGAG CTGGAAAGGA GGAAGAAATG AAGGAGAAAA AGAGGAAGAG GGGGAAAAAA CTGGGTGTAT TGGTTCATTG 002000 002001 AGTCAAGGCA TACAAGTTAG ATCTTCAAAT TACTACAACA CTTTTGTCAG AAATGTGCTT TGTTTAACTC CAACTTTGTT 002080 002081 TCAGGCATCA ATAAATTTAC AAAAAAGCTT CGGAGTCCAT ATGCAATTGA TAACAATGAA CTACTTGACT TCCTTTCCAG 002160 002161 AGTCCCTTCA GATGTACAAG TGGTGCAATA CCAAGAACTG AAACCAGATC CTTCTCATAG CCCAT |
Predicted Small Protein
Name | NONHSAT102832_smProtein_1430:1708 |
Length | 93 |
Molecular weight | 10388.7317 |
Aromaticity | 0.130434782609 |
Instability index | 45.0479347826 |
Isoelectric point | 9.78070068359 |
Runs | 12 |
Runs residual | 0.00477009696591 |
Runs probability | 0.0592430665959 |
Amino acid sequence | MDQNQDSRSLFCMNSLKRSQDAPVYGSVFTSLLISCKGVYLFIYFYKVGGKSFHFRFEKN KHHVSSKHLAGINSSTHPHLQKGASFGKGETK |
Secondary structure | LLLLLLLLLEEEHHHLLLLLLLLLEEEEEEEEEEELLLEEEEEEEEEELLLEEEEEEELL LEEEELLLLLLLLLLLLLLLLLLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLL LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | oooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiii iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii |