NONHSAT102960
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT102960 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2214 nt |
Genomic location |
chr5+:98185053..98187266 |
Exon number |
1 |
Exons |
98185053..98187266 |
Genome context |
|
Sequence |
000001 cctcccgagt agctgggatt acaggcgcac aacaccatgc ctggctaatt tttgtgtttt tttagtagag acggggtttc 000080
000081 accatgttgg ccaggctggt ctcaaactcc tgaccttctg atccgcctgc ctcagcctcc caaagtgctg ggattacagg 000160 000161 catgagccac cacgcccggc ctgagatcca atttttttaa tattaaataa agagaaagcc aaaacaattt ttaaaaagca 000240 000241 aaataggact cacgactacc tgattttatg gtttactata aactacagta atcaccatag tgtggtgttg gcataaagac 000320 000321 agaaatataa attaatggga cagaatggaa agcccagaaa cagactcaca catatatgaa cagctgattt tcaataaaaa 000400 000401 tcaaataagc caggcaaggt ggcattcacc tatagtccta gctacttgaa agacttagtt gggaggacgg ctttgagcat 000480 000481 gggtgtttga gaccagcctg ggcaatatgg tgagatctcg tctcaaaata aataaataaa taataaagaa atgtagtgga 000560 000561 aaaaggatag tcttattaac aaatggtact gaaaaaattg gatatataat atttaagcaa taacaaaacc cacaactttg 000640 000641 tgtgttccac acaacataca aaacatcaac tcaaaatgaa tcacagacAT Acttaaaagg tcaaggctgc agtgagccat 000720 000721 gattgtgcca ctgcactcca acctgggAAA ggaggatcac tcagcaataa aaggaaatga actactgata aatgcaaaat 000800 000801 catggataat tacaaaagca tcatgctaag caaacggcaa actcaaaggg caacatacaa tatgattcca tttatatgac 000880 000881 attatgggaa aaataaaact ataggaacaa atcagtgatt gccaagggct tggtataggg gaaaggagca aaagagaatt 000960 000961 tacttgataa gatggaaata ttttatatct taagtacgct gatagttaca acaactgcat aatctgtcaa aactcatcat 001040 001041 gctgtacacc tagagaaggt gaatttAACT TGGGTAAACA TGATGTAAAT TTCTTAATGG GAAAAACCTA GCAAGTAACA 001120 001121 GCAAGAGAGG GGATATTTTT TGCTTTTGCA ATTTTACTTT AAAAACATTG GAAATACAAC ATATTTCTCT TAGTGTTTTT 001200 001201 ACAAGTCGTG TTCTTGTGCG TTAAGAAAGA TAGTGTATCA TGATACCTAA AAACATATTT CCTTTCGAAA GATAAGGGAA 001280 001281 TAGACAACcc agtcactgtg gcttgagtct gtaatcccag ctacttggga ggctgaggca ggaagattgc cttgatccca 001360 001361 ggagttcgat accagcctgg agcaatatag caagacttca cttctaattt aaaaaaTAAT AATGAAGAAG GTTCATAAGA 001440 001441 AAGGTAAAGC AATAGACAAA TCAGAATGTT TTATATTTTC CTATTATATA CCACATCTCT GCATATCTCT TCGCAAAGTA 001520 001521 TCAATTATAT TTCCTAAGTA GCCATATAGT TACAGAAACC AGTTTTTCAT TTAAGCATTA CTGTATTATT TATAACAGTG 001600 001601 GAATTAACCT CTATATTAAT TATTCAGGTA AATGAAAGAG ATATTAAAGC CCCATTACTT GGAGCATTTC CCTGCCATTT 001680 001681 Taattcctag agatgaggct tatgtttttc tatatttctc aagtacctcc ggtgattttt atcagtcaag tttaaaaacT 001760 001761 GGAAGTTAGT AAACAGACTC AAGTAATCCA TGAGATAGTA AGGCATACGA TAATTTCCAA TACTAACAAA TCAGGTTAAC 001840 001841 AACGGTAAGA CAAAAAGTTT GGTAATGTTG GCCATTTATA GGGCATAGCA TTTCCGGGAA GGACATTAAA AAAAATGAAA 001920 001921 ATATAATTGA tacaaggcat tgttttaagt actgagaata tagcagtgaa caaaataaag tccctgccct aatggaactt 002000 002001 atattctagt ggggaagcag tcaatggcaa atgaaccaaa tatataagct gtggtaatgc tagaagaaaa tgcaagataa 002080 002081 gggattttta aaaatgatgg ggcagggtac taatttcaag acttgaaatg acatttgagc tgaaagaaac ctgaattgag 002160 002161 gaaacgagtt ttgtacaagt cacaaataag cttttttttt tttttttttt tttt |
Predicted Small Protein
Name | NONHSAT102960_smProtein_1631:1768 |
Length | 46 |
Molecular weight | 5227.8939 |
Aromaticity | 0.177777777778 |
Instability index | 51.2046666667 |
Isoelectric point | 5.99578857422 |
Runs | 7 |
Runs residual | 0.00669191919192 |
Runs probability | 0.0477704595351 |
Amino acid sequence | MKEILKPHYLEHFPAILIPRDEAYVFLYFSSTSGDFYQSSLKTGS |
Secondary structure | LLLLLLLLLLLLLLEEEELLLLEEEEEEEELLLLHHHHHHHLLLL |
PRMN | - |
PiMo | - |