NONHSAT103270

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT103270

Source

NONCODE4.0

Same with

,

Classification

sense

Length

6708 nt

Genomic location

chr5+:112916963..112930982

Exon number

3

Exons

112916963..112920176,112926738..112926941,112927693..112930982

Genome context

Sequence
000001 CATGCATTAA AAATAATGAA ATTAGTAGTA AATTATATGA AATGTGAAAT AAGTTTGTTG GAAACAGTTG CAAACTAATG 000080
000081 GAAACTAATC AACACATAGG TGTTTTGCAT ATGTGATATT CATTTGCTTG TATCTATTTG AACTATTACA GGCAGCTAGT 000160
000161 TTATTGCTGC AGCTCAGACA GAAGTGGCAT AGCTTATTTT TACGCCGAAT GAGAGCTCCA TCTAAACCTT GGTCTCAAGT 000240
000241 TGATGAAGCT ACCATAAGAG CAATTATAGC TGTTTTAAGC ACTGAAGAAC AGTCTGCAGG TTTACAACAA CCATCTGGGA 000320
000321 TTGGCCAAAG GCCAAGGCCT ATGTCTTCAG AAGAGCTTCC TTTGGCCTCA TCTTGGAGGT CAAATAATAG TAGGAAAAGT 000400
000401 TCAGCAGATA CTGAATTTTC TGATGAGTGT ACTACTGCAG AAAGGTAAAT TTATGACATT TTACCAAAAT GGGTCACTTT 000480
000481 TTATTCAGGA AAATGAATTA TTTATCTTAG AATCATGTGC ttttataata tttaaaaatt acttttttat aatCTAAGAT 000560
000561 CCATGAAAAG ATAGCAATAA AGTGGAAAGA GTTTTCTACT TGTTCAACTT AATTCTTCTA AGTATTAAGG TAATATGAAT 000640
000641 TTTAAACTAT TGATATCTGT GAGTTATTTA ATAAGGCAAC TCTTTGTCAG GAAAAGGTCA AAATATCTAA TTTCTAGAAT 000720
000721 TGGGTCTCTC AAAAATATAT AGACATTTTA AAATTATGTA TTTTACTTGA TATATGTGAA GTAACATTTT ACCTAGATAC 000800
000801 CCTGGGCCAT ACTGGCTATG GCCATTTAAA AGAACAACCT CCTTATAAGC CTTATCTAGA TATCAATACT GCTGATTAGC 000880
000881 ATTCCTATAG AAAAGTACTT CACTCAGTGA CACATTGAAT GCCAgttctt ggtgtgaggg atctagaagt gtacaaaaca 000960
000961 ggtaagatct cctccagagg atatacattt gattgagggg aggcatataa taagtaaaca aatTTACTGT CATATGACAA 001040
001041 GATTTCTGTT ATAATTTAGC CAAATTCTTC TTTTCTTCTT TTGCAATTAA ATGTGGTGGT GTTTTTGTTT ATTTTATGAA 001120
001121 TATTAATGAG ATACCGCATA CTGAATTATT TATGTAAAAA ATATATTTTA GTAATATGAT AGTGGTTACA ATAAATCATT 001200
001201 GGCCATGATT CAGAAGTGTT TCTGGTTATA AAAACATTTG TTAGAATCAA ATTTAAGTTA TTTTATAATC AGGTTTTCAC 001280
001281 CTTGTTAAAA TTCATAACAA AAAACATTCT TGGTTATGAG GCTAGTTTTG GCAATACTGG TAGAAAAGTC TCTGTAGTAA 001360
001361 GAATTTGATT TTATAGTTAA ACTGAAAATA GAAACAATGG AAACATAAAA GATACGTAAT GCTTACTGTT TTTCAAGGAT 001440
001441 CAGGTGGGGT TTTTAGTACC TTTTTTGATC AGATTTTTGC ATATTTGAAT GAAATATAAA GGCTTAATAT CATTTAAGCC 001520
001521 TTTAAAGAGG AATAAAACAT TGGTTTCCAT GTTCTTCAGA TATTACATTT TAGTAATAAT TTAACCAGTT TCCAAGGAAA 001600
001601 GCTTGTAAAA TGTGTGCTGA ACCTTTCTTT CTGGTCTAGA CCCTGCTGAG AAAAAGGGGA AGACTAAGAA GTAATTTTTT 001680
001681 TACTTAGATA CACCGTACTT TTTGAAAATA TTGTTCTAGA ATTTTCTTGA GCATTAGTTA TTTAGGATGT AGGAATATAT 001760
001761 TTCCATAGGA GTTATTCTGT GGTAGAGTTA TTCCTAAACC AGCCTATGAA AAGTTCTGTT AGATTCAAGA AACGTGACAT 001840
001841 ACTAATATAT AATGCATGAG TGTTTCTTGT ATGCTGATTC AAAGGAATCA ATAATTTGAG ACAACTGAGG Aaatgataat 001920
001921 tttattggga ttggtaacca ctttggttat gtaaggacaa tgcactcatt ttaacagatg catatttaaa tatggaagga 002000
002001 taaaatgaca tgatgtgtgg gatttacttt taaatatgta agccaaaaca gaaaggaagc aggaaagaaa aaacaaaatA 002080
002081 ATGTTAGATA AATCAACTAG GTGAAATGTT CAAGGAACTA GGTCAGTGGT ACTGTGAGAT GTCCTACATT CTGAATTTGT 002160
002161 CTCTGTTTTT TTCCTGGCAC TATTTATTTC TATACCCTAT GTATCTTTTA ttttttattt atttttatat tttatttttg 002240
002241 agacagtctc actgtgtcgc ccaggctgga gtgcagtggc acgatctcag ctcactgcaa cctctgcctc ctgggttcaa 002320
002321 gcaatttcct gcctcagtct cctgagtagc tggaattaca ggtgcacgcc accacgcccg gctaattttt gtatttttag 002400
002401 tagagatggg gtttcaccat gttagtcagg ctggtctcga acccctgacc tcgtaatctg cccgcctcgg cttcccaaag 002480
002481 tgctgggatt acaggcgtga gccactgcac ccggACTCCA TACcctatgt atcttatata agctggtggt tagctctcag 002560
002561 ggtttgattt gatccagtgt tttaacaaga atattttata ggtggtgttg tgaactttat attgcaatac atcaggaagt 002640
002641 acttaatgtc tgtcccaGAA AGACCCATAC TTTAAGAAAG ATTATGAAAT TCCTGACTGC GATGTTTGTG GCATTTATtc 002720
002721 atagaatttt agaatataaa aatcttggag tttagatata atccttttat tttatttaac agataaggaa attaaagttc 002800
002801 caataagtta cgaggcttgc tcaggatctc atacctagtt agttgtaaat ttagaactgc catagacatc tatatttcct 002880
002881 gaccttagtA TTTTTAAATA ATATTCCATA AATCATAAGA TCATTGGGAC TTTGGATTGA AATGGCATCT GCTTTGTATT 002960
002961 ATAAACTTAT ACATAACTGA TCTTTGTATG ACGAACTTAT ATATAACTGA TCTTTGCTTC CTCCTTCTTG CTCAAGAGTA 003040
003041 CTGATGAAAT CTCCATCTCC AGCATTACAC CCACCTCAGA AGTACAAAGA TAGAGGAATT TTACATCCTA AACGAGGTAC 003120
003121 TGAGGACCGA TCAGATCAGT CTTCTCTGAA ATCTACAGAC AGCAGTAGTT ACCCAAGTCC TTGTGCTAGT CCTTCTCCTC 003200
003201 CATCCTCAGG AAAGGGCTCA AAATCTCCTT CGCCAAGACC AAACATGCCT GTTCGATACT TCATAATGAA GAGTAGCAAT 003280
003281 TTGAGAAACC TTGAAATTTC TCAACAGAAG GGTATCTGGT CTACAACTCC TAGTAATGAA CGGAAGCTAA ATCGAGCCTT 003360
003361 TTGGGAAAGC AGCATAGTTT ACTTGGTATT TTCTGTTCAA GGATCTGGAC ATTTCCAGGG ATTTTCTAGG ATGTCTTCTG 003440
003441 AGATTGGAAG GGAAAAGAGT CAGGACTGGG GCTCTGCTGG ACTAGGAGGA GTATTTAAGG TGGAGTGGAT ACGAAAAGAA 003520
003521 AGCCTTCCCT TTCAATTTGC ACACCATTTA CTCAATCCAT GGAATGACAA CAAGAAAGTG CAGATAAGCA GGGATGGGCA 003600
003601 GGTATACAAT GGCATTTTTT TTTTTATTTA CTTTTGTTTC TGTTTGTTTT CTGTTATCCA GTGCTTTAAT TGAGGAGAAA 003680
003681 ATGTAAGAGT ACAAATTTTA TATTCCATAT GCACATGGGA AACAGGGGTT CAGGTTTGTA AAAAGATAGT AAAAACCTAC 003760
003761 TTGTAAATGT GTCTGATTGC TCCTTGCAGT CAGAGTCTCA AGATGACAAT AGTATTTAAC TTCTCTTTGG CTTTAATTAT 003840
003841 GTAAAGTAAA TAACCTTTTT ATATTCTAGT GGCTTGTTTA TTTCTATTGT GTTTTGCTTT GTCTTCATGA TGCTATTTAC 003920
003921 ATGCATTTTA AGCTAGTTAA GATGATGGAA ATTAATGTAT ATTGAccaaa tactatgcta gctgctttag aagatataat 004000
004001 ttatttctta tgattaaatt attagtccaa ttttatatag gagaaaatag actcaaagat tagttttgcc taaggtcaca 004080
004081 cagctaataa tttatctgaa ccagtatGAC TCGTTTCAAA TCACCATGTA AAAAGTGTTT GGGTTCTTCT TAAGTGCTTA 004160
004161 TCATAGGTTA TCATTCCACA GGAGTACTAT GAAGTGGGAT TCTTTTCAAT TGTGTGAGAA TAATTTCATT TTTATTCTAT 004240
004241 AATAATGATT TTGAAGAAAT ATGTTAGCTA GAAATCTTAG AAGaaaaaat attttaataa ttttCAAGAT AAGAAGATAT 004320
004321 AGTTGCTTAA GAGAGTTCCT TGGAAAAAAA CCCAACATCG AATATGCTAG GTTTCACAGT AAACCTTTGG AAGTTCCAGC 004400
004401 TGAGTGCTTT TGCTGAATCT CTATGAAAAA CAAAATCCAT TATTTTTAGG TAGAAACAGT TCCAGGACTC CATGGGAATC 004480
004481 TGTTGCCATT TTGTCACAAA AGTTGAGAGA TTTTGCAGAT TAACTGTAAT CTTAAATCTG GAAGTCAACT CCATAAACCT 004560
004561 TAAAGCAAAG AATTAGAACA ATTCATACCA GATGATTTTA GCATACGCTG GTAGGAAAAT GAAATTTAAA GTGATTTTCT 004640
004641 TACATTTTTA TCAGTGTAGG TTTTGGTCAT TAAAAATTTT CACTCCAGTT CTTTTTATGT TTATTTTGAC TTCTGATTTA 004720
004721 TCTAGGAACT AGAACCTCTG GTTGGTGAAC AGTTGCTCCA GTTATGGGAA CGTCTTCCCT TGGGAGAAAA AAACACAACT 004800
004801 GATTGACACT CAGGTTATAC CATCTTGACT TTGAGTATTG GCAGTATTTG TGATCATTAG GAACCTTTCA GATTATTTAT 004880
004881 CTTTTTTTTT CCCCTTTCTT CTAGAACTCT TAGCTGTGGA AGAACATCAT GCCTATTTAT AACCACTGAA TGCACTGACT 004960
004961 TTCAAAAACT GAGGTGGGGT GTGTGTTACG AATGGGCTTT TTAACACTTT TAGAGTGTTG CTTTAGAACT ACCATCTTCA 005040
005041 TATACAGGAG AAAGGAAGCA TTTAAATTTT TATAGTGATT ATAGAGAATG ATTATATGAT GTTTGTAATG AATAAAATAG 005120
005121 TAGTTTCATT ATTTGGCACA ATAGCAGTTT ATTTTAAACA AACAATTTGA AGTTAAACAT TTCATTTTTA AAAACACTGA 005200
005201 ATTACAGTTC TTATTGATGA CTTTTTAATG CAGAGTAAGT TGTTTAAGAA AGGCCTGAAT ATATCAGAAC ATCTGAGCAC 005280
005281 CATTTTAGAA GAGTCAACTC TTAAGATTAT CATTAGAAAA CAAATACGTC AACACCTATG AAAAGAAGCG GGGAAAACAA 005360
005361 CAACAAGGAC AACAACAAAA AACCAGTGAA ATTCTACAAG TGTCCCTTTT AAAAATAGTG TGTGCTAACT AAGGGCTATT 005440
005441 CATTCTGCCA TTTTTAACTT GAGACACATT TAAGAATAAA GTTGGATGTT CTTTTTCTGT GATTATGAAA TGCAATAAAA 005520
005521 TCTGAATAAA GGGCAAAGTT TCTTCCTGAT CAGATTAGAT TAAGTGCTTA GTTTTATTCC TAATTCTGCC CCTTTTAACC 005600
005601 TGATGTGTAC CTTACTCTTT cctccctctc ttcctccctt cctcctctcc ccgctccttt cctgcatttc tccctccctc 005680
005681 cttccctcGT CACATCTCTT ATATGAGCAC AGTAATTATG ACCTTTTTGT TTTGGCTACA ACTTGATTGA AACAAGTTCA 005760
005761 AAATTTAAAC AAGTTCATAC AAGTTTTTAA AAATTCTCAA CTGGTAGCTT GCTTGCTGTG CGTCTTCCAA ACTAAAGCCT 005840
005841 GCAAGCGCCA CAATTCTAAG TGCCGCCTTC CATTTTTTTT CAGTATGTTT TCACTGGCTT ATGTTTTCAG ATATGATTTT 005920
005921 CCTTTTTCGC ATATATGGTT TAATAAATGG GGGATAATTT TTTTTTTGTA AATCCGTGCT TGTGCCAAGT CTCATATTTC 006000
006001 TTTGCCATCT CAGAATTATC TTTTTACCAC CACTGTTTAT AAAATTTCCT TAGAGACTTT TTGAAGGGAA AATAGAGCAA 006080
006081 CAGGGAAAAA TGAAAGAAAT GTCTTGGTTA CTGAGCTCTA AATAGACAGG TTTGATGGCA CTTCTCATGA TACATTTTAG 006160
006161 TTATTCTTAT AAAAGCAAAC AGGCAAACAT GAGTGTAAAT TAAAGACAAA AAGAAAACTC TGGTTTTATA TTTGAGAACA 006240
006241 CGTGAAAAAT CATGGGTCAA CATAAAATCT TGAGAACCTT CTACTTTCTC TGGGAAAGCA TTATATAGTG GTGCATTAGT 006320
006321 TTAGAAAGTC AGCTATGATT TTGCCTATAG TTCTAGTTAT TAGCTTTGGG GTTTTCTTGT ACTTTAAGAC ATACCTGTAA 006400
006401 ATTGAACCTA TTTGAATTAT ATTCCACTGT ATGTGTATTA TGGCTCTTTT CCTATTAGAG CAACTTGTGT TTCCCTGATA 006480
006481 ATGTGTACAT TTTTTAGGCA TGTACTTAAT AGTTCACAAT GTTCTAAATT TGGAAGGACT TAAAAAAAAA ACTTGTTTAA 006560
006561 ATTTCCATCT GTTTTGTAAT ATCTAGCTCT ATATGTAAAT GATGGGTTTG TTGGTATTTA AAATGAATAC AACTTGAATG 006640
006641 TAATTAAAGT GCTGTTTTTT GGAAGCGATA AACTTTAAAT ATACTTATTA AAATGAAATT CTATTAAG
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Predicted Small Protein

Name NONHSAT103270_smProtein_2105:2344
Length 80
Molecular weight 9545.1072
Aromaticity 0.253164556962
Instability index 66.0710126582
Isoelectric point 6.80035400391
Runs 5
Runs residual 0.0769897693775
Runs probability 0.00363893305069
Amino acid sequence MFKELGQWYCEMSYILNLSLFFSWHYLFLYPMYLLFFIYFYILFLRQSHCVAQAGVQWHD
LSSLQPLPPGFKQFPASVS
Secondary structure LHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLEEEEL
LLLLLLLLLLLLLLLLLLL
PRMN LLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLL
LLLLLLLLLLLLLLLLLLL
PiMo iiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooooooooooooooooooo
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