NONHSAT103270
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT103270 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
6708 nt |
Genomic location |
chr5+:112916963..112930982 |
Exon number |
3 |
Exons |
112916963..112920176,112926738..112926941,112927693..112930982 |
Genome context |
|
Sequence |
000001 CATGCATTAA AAATAATGAA ATTAGTAGTA AATTATATGA AATGTGAAAT AAGTTTGTTG GAAACAGTTG CAAACTAATG 000080
000081 GAAACTAATC AACACATAGG TGTTTTGCAT ATGTGATATT CATTTGCTTG TATCTATTTG AACTATTACA GGCAGCTAGT 000160 000161 TTATTGCTGC AGCTCAGACA GAAGTGGCAT AGCTTATTTT TACGCCGAAT GAGAGCTCCA TCTAAACCTT GGTCTCAAGT 000240 000241 TGATGAAGCT ACCATAAGAG CAATTATAGC TGTTTTAAGC ACTGAAGAAC AGTCTGCAGG TTTACAACAA CCATCTGGGA 000320 000321 TTGGCCAAAG GCCAAGGCCT ATGTCTTCAG AAGAGCTTCC TTTGGCCTCA TCTTGGAGGT CAAATAATAG TAGGAAAAGT 000400 000401 TCAGCAGATA CTGAATTTTC TGATGAGTGT ACTACTGCAG AAAGGTAAAT TTATGACATT TTACCAAAAT GGGTCACTTT 000480 000481 TTATTCAGGA AAATGAATTA TTTATCTTAG AATCATGTGC ttttataata tttaaaaatt acttttttat aatCTAAGAT 000560 000561 CCATGAAAAG ATAGCAATAA AGTGGAAAGA GTTTTCTACT TGTTCAACTT AATTCTTCTA AGTATTAAGG TAATATGAAT 000640 000641 TTTAAACTAT TGATATCTGT GAGTTATTTA ATAAGGCAAC TCTTTGTCAG GAAAAGGTCA AAATATCTAA TTTCTAGAAT 000720 000721 TGGGTCTCTC AAAAATATAT AGACATTTTA AAATTATGTA TTTTACTTGA TATATGTGAA GTAACATTTT ACCTAGATAC 000800 000801 CCTGGGCCAT ACTGGCTATG GCCATTTAAA AGAACAACCT CCTTATAAGC CTTATCTAGA TATCAATACT GCTGATTAGC 000880 000881 ATTCCTATAG AAAAGTACTT CACTCAGTGA CACATTGAAT GCCAgttctt ggtgtgaggg atctagaagt gtacaaaaca 000960 000961 ggtaagatct cctccagagg atatacattt gattgagggg aggcatataa taagtaaaca aatTTACTGT CATATGACAA 001040 001041 GATTTCTGTT ATAATTTAGC CAAATTCTTC TTTTCTTCTT TTGCAATTAA ATGTGGTGGT GTTTTTGTTT ATTTTATGAA 001120 001121 TATTAATGAG ATACCGCATA CTGAATTATT TATGTAAAAA ATATATTTTA GTAATATGAT AGTGGTTACA ATAAATCATT 001200 001201 GGCCATGATT CAGAAGTGTT TCTGGTTATA AAAACATTTG TTAGAATCAA ATTTAAGTTA TTTTATAATC AGGTTTTCAC 001280 001281 CTTGTTAAAA TTCATAACAA AAAACATTCT TGGTTATGAG GCTAGTTTTG GCAATACTGG TAGAAAAGTC TCTGTAGTAA 001360 001361 GAATTTGATT TTATAGTTAA ACTGAAAATA GAAACAATGG AAACATAAAA GATACGTAAT GCTTACTGTT TTTCAAGGAT 001440 001441 CAGGTGGGGT TTTTAGTACC TTTTTTGATC AGATTTTTGC ATATTTGAAT GAAATATAAA GGCTTAATAT CATTTAAGCC 001520 001521 TTTAAAGAGG AATAAAACAT TGGTTTCCAT GTTCTTCAGA TATTACATTT TAGTAATAAT TTAACCAGTT TCCAAGGAAA 001600 001601 GCTTGTAAAA TGTGTGCTGA ACCTTTCTTT CTGGTCTAGA CCCTGCTGAG AAAAAGGGGA AGACTAAGAA GTAATTTTTT 001680 001681 TACTTAGATA CACCGTACTT TTTGAAAATA TTGTTCTAGA ATTTTCTTGA GCATTAGTTA TTTAGGATGT AGGAATATAT 001760 001761 TTCCATAGGA GTTATTCTGT GGTAGAGTTA TTCCTAAACC AGCCTATGAA AAGTTCTGTT AGATTCAAGA AACGTGACAT 001840 001841 ACTAATATAT AATGCATGAG TGTTTCTTGT ATGCTGATTC AAAGGAATCA ATAATTTGAG ACAACTGAGG Aaatgataat 001920 001921 tttattggga ttggtaacca ctttggttat gtaaggacaa tgcactcatt ttaacagatg catatttaaa tatggaagga 002000 002001 taaaatgaca tgatgtgtgg gatttacttt taaatatgta agccaaaaca gaaaggaagc aggaaagaaa aaacaaaatA 002080 002081 ATGTTAGATA AATCAACTAG GTGAAATGTT CAAGGAACTA GGTCAGTGGT ACTGTGAGAT GTCCTACATT CTGAATTTGT 002160 002161 CTCTGTTTTT TTCCTGGCAC TATTTATTTC TATACCCTAT GTATCTTTTA ttttttattt atttttatat tttatttttg 002240 002241 agacagtctc actgtgtcgc ccaggctgga gtgcagtggc acgatctcag ctcactgcaa cctctgcctc ctgggttcaa 002320 002321 gcaatttcct gcctcagtct cctgagtagc tggaattaca ggtgcacgcc accacgcccg gctaattttt gtatttttag 002400 002401 tagagatggg gtttcaccat gttagtcagg ctggtctcga acccctgacc tcgtaatctg cccgcctcgg cttcccaaag 002480 002481 tgctgggatt acaggcgtga gccactgcac ccggACTCCA TACcctatgt atcttatata agctggtggt tagctctcag 002560 002561 ggtttgattt gatccagtgt tttaacaaga atattttata ggtggtgttg tgaactttat attgcaatac atcaggaagt 002640 002641 acttaatgtc tgtcccaGAA AGACCCATAC TTTAAGAAAG ATTATGAAAT TCCTGACTGC GATGTTTGTG GCATTTATtc 002720 002721 atagaatttt agaatataaa aatcttggag tttagatata atccttttat tttatttaac agataaggaa attaaagttc 002800 002801 caataagtta cgaggcttgc tcaggatctc atacctagtt agttgtaaat ttagaactgc catagacatc tatatttcct 002880 002881 gaccttagtA TTTTTAAATA ATATTCCATA AATCATAAGA TCATTGGGAC TTTGGATTGA AATGGCATCT GCTTTGTATT 002960 002961 ATAAACTTAT ACATAACTGA TCTTTGTATG ACGAACTTAT ATATAACTGA TCTTTGCTTC CTCCTTCTTG CTCAAGAGTA 003040 003041 CTGATGAAAT CTCCATCTCC AGCATTACAC CCACCTCAGA AGTACAAAGA TAGAGGAATT TTACATCCTA AACGAGGTAC 003120 003121 TGAGGACCGA TCAGATCAGT CTTCTCTGAA ATCTACAGAC AGCAGTAGTT ACCCAAGTCC TTGTGCTAGT CCTTCTCCTC 003200 003201 CATCCTCAGG AAAGGGCTCA AAATCTCCTT CGCCAAGACC AAACATGCCT GTTCGATACT TCATAATGAA GAGTAGCAAT 003280 003281 TTGAGAAACC TTGAAATTTC TCAACAGAAG GGTATCTGGT CTACAACTCC TAGTAATGAA CGGAAGCTAA ATCGAGCCTT 003360 003361 TTGGGAAAGC AGCATAGTTT ACTTGGTATT TTCTGTTCAA GGATCTGGAC ATTTCCAGGG ATTTTCTAGG ATGTCTTCTG 003440 003441 AGATTGGAAG GGAAAAGAGT CAGGACTGGG GCTCTGCTGG ACTAGGAGGA GTATTTAAGG TGGAGTGGAT ACGAAAAGAA 003520 003521 AGCCTTCCCT TTCAATTTGC ACACCATTTA CTCAATCCAT GGAATGACAA CAAGAAAGTG CAGATAAGCA GGGATGGGCA 003600 003601 GGTATACAAT GGCATTTTTT TTTTTATTTA CTTTTGTTTC TGTTTGTTTT CTGTTATCCA GTGCTTTAAT TGAGGAGAAA 003680 003681 ATGTAAGAGT ACAAATTTTA TATTCCATAT GCACATGGGA AACAGGGGTT CAGGTTTGTA AAAAGATAGT AAAAACCTAC 003760 003761 TTGTAAATGT GTCTGATTGC TCCTTGCAGT CAGAGTCTCA AGATGACAAT AGTATTTAAC TTCTCTTTGG CTTTAATTAT 003840 003841 GTAAAGTAAA TAACCTTTTT ATATTCTAGT GGCTTGTTTA TTTCTATTGT GTTTTGCTTT GTCTTCATGA TGCTATTTAC 003920 003921 ATGCATTTTA AGCTAGTTAA GATGATGGAA ATTAATGTAT ATTGAccaaa tactatgcta gctgctttag aagatataat 004000 004001 ttatttctta tgattaaatt attagtccaa ttttatatag gagaaaatag actcaaagat tagttttgcc taaggtcaca 004080 004081 cagctaataa tttatctgaa ccagtatGAC TCGTTTCAAA TCACCATGTA AAAAGTGTTT GGGTTCTTCT TAAGTGCTTA 004160 004161 TCATAGGTTA TCATTCCACA GGAGTACTAT GAAGTGGGAT TCTTTTCAAT TGTGTGAGAA TAATTTCATT TTTATTCTAT 004240 004241 AATAATGATT TTGAAGAAAT ATGTTAGCTA GAAATCTTAG AAGaaaaaat attttaataa ttttCAAGAT AAGAAGATAT 004320 004321 AGTTGCTTAA GAGAGTTCCT TGGAAAAAAA CCCAACATCG AATATGCTAG GTTTCACAGT AAACCTTTGG AAGTTCCAGC 004400 004401 TGAGTGCTTT TGCTGAATCT CTATGAAAAA CAAAATCCAT TATTTTTAGG TAGAAACAGT TCCAGGACTC CATGGGAATC 004480 004481 TGTTGCCATT TTGTCACAAA AGTTGAGAGA TTTTGCAGAT TAACTGTAAT CTTAAATCTG GAAGTCAACT CCATAAACCT 004560 004561 TAAAGCAAAG AATTAGAACA ATTCATACCA GATGATTTTA GCATACGCTG GTAGGAAAAT GAAATTTAAA GTGATTTTCT 004640 004641 TACATTTTTA TCAGTGTAGG TTTTGGTCAT TAAAAATTTT CACTCCAGTT CTTTTTATGT TTATTTTGAC TTCTGATTTA 004720 004721 TCTAGGAACT AGAACCTCTG GTTGGTGAAC AGTTGCTCCA GTTATGGGAA CGTCTTCCCT TGGGAGAAAA AAACACAACT 004800 004801 GATTGACACT CAGGTTATAC CATCTTGACT TTGAGTATTG GCAGTATTTG TGATCATTAG GAACCTTTCA GATTATTTAT 004880 004881 CTTTTTTTTT CCCCTTTCTT CTAGAACTCT TAGCTGTGGA AGAACATCAT GCCTATTTAT AACCACTGAA TGCACTGACT 004960 004961 TTCAAAAACT GAGGTGGGGT GTGTGTTACG AATGGGCTTT TTAACACTTT TAGAGTGTTG CTTTAGAACT ACCATCTTCA 005040 005041 TATACAGGAG AAAGGAAGCA TTTAAATTTT TATAGTGATT ATAGAGAATG ATTATATGAT GTTTGTAATG AATAAAATAG 005120 005121 TAGTTTCATT ATTTGGCACA ATAGCAGTTT ATTTTAAACA AACAATTTGA AGTTAAACAT TTCATTTTTA AAAACACTGA 005200 005201 ATTACAGTTC TTATTGATGA CTTTTTAATG CAGAGTAAGT TGTTTAAGAA AGGCCTGAAT ATATCAGAAC ATCTGAGCAC 005280 005281 CATTTTAGAA GAGTCAACTC TTAAGATTAT CATTAGAAAA CAAATACGTC AACACCTATG AAAAGAAGCG GGGAAAACAA 005360 005361 CAACAAGGAC AACAACAAAA AACCAGTGAA ATTCTACAAG TGTCCCTTTT AAAAATAGTG TGTGCTAACT AAGGGCTATT 005440 005441 CATTCTGCCA TTTTTAACTT GAGACACATT TAAGAATAAA GTTGGATGTT CTTTTTCTGT GATTATGAAA TGCAATAAAA 005520 005521 TCTGAATAAA GGGCAAAGTT TCTTCCTGAT CAGATTAGAT TAAGTGCTTA GTTTTATTCC TAATTCTGCC CCTTTTAACC 005600 005601 TGATGTGTAC CTTACTCTTT cctccctctc ttcctccctt cctcctctcc ccgctccttt cctgcatttc tccctccctc 005680 005681 cttccctcGT CACATCTCTT ATATGAGCAC AGTAATTATG ACCTTTTTGT TTTGGCTACA ACTTGATTGA AACAAGTTCA 005760 005761 AAATTTAAAC AAGTTCATAC AAGTTTTTAA AAATTCTCAA CTGGTAGCTT GCTTGCTGTG CGTCTTCCAA ACTAAAGCCT 005840 005841 GCAAGCGCCA CAATTCTAAG TGCCGCCTTC CATTTTTTTT CAGTATGTTT TCACTGGCTT ATGTTTTCAG ATATGATTTT 005920 005921 CCTTTTTCGC ATATATGGTT TAATAAATGG GGGATAATTT TTTTTTTGTA AATCCGTGCT TGTGCCAAGT CTCATATTTC 006000 006001 TTTGCCATCT CAGAATTATC TTTTTACCAC CACTGTTTAT AAAATTTCCT TAGAGACTTT TTGAAGGGAA AATAGAGCAA 006080 006081 CAGGGAAAAA TGAAAGAAAT GTCTTGGTTA CTGAGCTCTA AATAGACAGG TTTGATGGCA CTTCTCATGA TACATTTTAG 006160 006161 TTATTCTTAT AAAAGCAAAC AGGCAAACAT GAGTGTAAAT TAAAGACAAA AAGAAAACTC TGGTTTTATA TTTGAGAACA 006240 006241 CGTGAAAAAT CATGGGTCAA CATAAAATCT TGAGAACCTT CTACTTTCTC TGGGAAAGCA TTATATAGTG GTGCATTAGT 006320 006321 TTAGAAAGTC AGCTATGATT TTGCCTATAG TTCTAGTTAT TAGCTTTGGG GTTTTCTTGT ACTTTAAGAC ATACCTGTAA 006400 006401 ATTGAACCTA TTTGAATTAT ATTCCACTGT ATGTGTATTA TGGCTCTTTT CCTATTAGAG CAACTTGTGT TTCCCTGATA 006480 006481 ATGTGTACAT TTTTTAGGCA TGTACTTAAT AGTTCACAAT GTTCTAAATT TGGAAGGACT TAAAAAAAAA ACTTGTTTAA 006560 006561 ATTTCCATCT GTTTTGTAAT ATCTAGCTCT ATATGTAAAT GATGGGTTTG TTGGTATTTA AAATGAATAC AACTTGAATG 006640 006641 TAATTAAAGT GCTGTTTTTT GGAAGCGATA AACTTTAAAT ATACTTATTA AAATGAAATT CTATTAAG |
Predicted Small Protein
Name | NONHSAT103270_smProtein_2105:2344 |
Length | 80 |
Molecular weight | 9545.1072 |
Aromaticity | 0.253164556962 |
Instability index | 66.0710126582 |
Isoelectric point | 6.80035400391 |
Runs | 5 |
Runs residual | 0.0769897693775 |
Runs probability | 0.00363893305069 |
Amino acid sequence | MFKELGQWYCEMSYILNLSLFFSWHYLFLYPMYLLFFIYFYILFLRQSHCVAQAGVQWHD LSSLQPLPPGFKQFPASVS |
Secondary structure | LHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLEEEEL LLLLLLLLLLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLL LLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooooooooooooooooooo ooooooooooooooooooo |