NONHSAT103321
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT103321 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
4776 nt |
Genomic location |
chr5+:115074730..115095533 |
Exon number |
4 |
Exons |
115074730..115074811,115090392..115093563,115093739..115093903,115094177..115095533 |
Genome context |
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Sequence |
000001 tgaatcccca tagtatacaa tttatttctc catgggcaac aagacatgcc agcaactgca cggctacttc tccatttagc 000080
000081 catagggaga ccccatctct aagaaaaaaa attagccaag tgtggtggca aatgcctgtg gtcctagcta ctcaagatgc 000160 000161 tgaggtggga ggatcacttg agcccaggag gtcgaggccg cagtgagcta tgattcacat cactgcactc cagcctgagt 000240 000241 gagagggaga ccctgtctca aTCAATCAAT CAATAAACAC AGAAGCAAAG TACTGAAGat aatgctgtat atttctggat 000320 000321 ctatccacac ttgttctgca gaagcccagc cccttcaaat tcacccaaaa ttgtttttga agtctgttgg gggtgtccca 000400 000401 tgtgtATGAA ACCAGCTCTT TTGTCTACCT CCCTGGTCTT CCATTTCCAT CCTCTCCTAC AGTGATGCCC CCTGCCAGTG 000480 000481 CCCCATGGGG CAGCTCTCTT CACATGGCCA TGCTAGTGAG GAGTGCTCCT CATTCCTGCT GGTGAGTGCC TGCCAGCATC 000560 000561 TCAGGCAAGG GACTGGAGTT CTTACAAGAC TACCATCCCC TACCTGGGCC CAAACTGACC TTCTTCTATT ATTTCTCTTT 000640 000641 TGCAGCTATC CCAGAGAATT CTGCCACCTT CCAGAGCCAA CTGTTTTCCC CTTTCTCTGC GTTTGATAGA AAAGAAAGAT 000720 000721 AAGAAATAAA TAGGGCTTAA TTTCCCAAAC CATTTATGTA GTTTTTCCTC CTTTTCAGGA CAGAGAATAA AGGGTCCCTG 000800 000801 TATTCATGCC TTCCTGGAAA TCTCAGTGCA AGGCCCTATC AGGAGGTTTC CTGGAGCAGC TAAGGGAACA GCTAGACCAC 000880 000881 CCAGGAAGAA ATGACAGAAG CCTACCTGAC TTCCAATCTG CTTGCTTCAT GGTGTAATGG GGGCCTAGAC AGAAGCACCC 000960 000961 CAAGGACACT TACAACAACT GTTCTGCCAG CTCTAGTCCA TTGGAGAAGA TGTGCCAACA TACCTTCTCA CCATCCCTAG 001040 001041 AGCCCAACCT TGCTATGGAA AGGTCAAACC CTTACCATTG GCCCTGCCAA GGATCCCCAG ACAGAGAAGC ACAATGGAGG 001120 001121 CCATAAATTA TGGCTTCTTA TCATGGCCTC CACATAACTT AAACTCTGGA TGGTGAATGA AATCTGGGGC CAAGTCTTAA 001200 001201 AGGGTCAGGG TAGCCAATGA GCATAACTCA ATATTTGTGT TTCTAAGAGA AAACCACAGA ACCTCCATAT CCATGgcaaa 001280 001281 ctggccagcc acaggctgga tccagtgtgc agtagtgttt tgtgtacacc attcactatt tgtctacttg ggttaaaaat 001360 001361 gttttatatt agttagcaat gtttaaacat tgggagaATT Aaagggaaat gaaaacgtac ttcccacaaa tacttgcaca 001440 001441 taaatattca cagcagcatt gtttataatt gcccaaaact agaaacaacc caaatatcca tcaactgatg aatgataaac 001520 001521 aagttgtggt atattcatcc aataaaacaa tattcagcaa taaaaataaa caaatcaggc acttaatata attgaatatc 001600 001601 aaggtcatta tgttgagtga aagaggccag aaaataaaag tatacactat ttgattccat ttatataata ttctagaaaa 001680 001681 tgaaaaccag tctatactta cagaaaacaa ggtggtagct tacagagatg gggtagaggg agggagagat gacagagagg 001760 001761 cataaaaaaa ctttccggac aatgaaaatg ttctgtattt taattgtggt gatggtttca tggatgtaca agttcatcaa 001840 001841 atctcatcaa gttaaatata tgcatttatt ttatattaag tgtacctcaa taaagcagaA AAATTTaaaa ttggtaatat 001920 001921 ttatatacaa attgagatat ctatatttct tgaaaatcaa aatgtctgac atcatttggt ctacatattt atctgccaaa 002000 002001 aatacaggag atagacagta gctgtccttt agaaggggca taccctttcg agtttgcaac aggccttcat acttcctgct 002080 002081 gcttacccag cATTCATTAC ATGTTTATTG tcatttattt aagttactta ttgtgaacct aatgcatgta tggcctcatt 002160 002161 ctaggtactg gagactaaac atgcaaacac acctaactgg catggtttcc atttgcctaa ttgtcacggg gtaccatgaa 002240 002241 gtttacattt tagtgagatt ggagaaagat agacatttag agttaataag ttggataaat agtatattag gtggaaagaa 002320 002321 gtataagaaa aaaacataca gccaggaaga agtatagaca gttccagagc taaaatgtta gccatggatc ccaggaagtc 002400 002401 ctcactgaaa ggtgactttg ggaggaaacc tgtagaaggt gaggaattga gctatgcata taacccaggg aagagcattc 002480 002481 tagacagaca tgacagtcca tgagaagatt ctaggcaagg gaggtagccc agggtcttca accaacagca aggaggctaa 002560 002561 tctagcttgg cacagagtaa caagagatga gatcagagaa ataacagggt agagatggtg tggagtctta tagattattg 002640 002641 aagggagttt gtcatttact ggatgaaata ggaagccttt ggagggtgtt gTTAATTGTA ATCATGATAG GGTTATTACT 002720 002721 TTTCTTATAG TAGAGTTCAA AAGAAAGGAA AACTTATTTT TGTAACCAGG TCATTAAcct ggcccctgta gacatctgag 002800 002801 tttgtaattt ctgTCATATT TTATCTAAAT ATCATGATAG AGAACAAAAT ATCTGACTGG TTCTGTACTG ATAGGCAGTC 002880 002881 AGTCATGCTG GCTAACTTTC AGAAATATGC CATGTTTGGT GGTCTCCTTT CTCTCTGTTT TCTCTAGGTT GAATATGGGG 002960 002961 ATTCAACCAC ATCACTTCAC TCTCTCACCC CTTATAGCAC ACGCTTCTCT CCCTTTCCTT GGCATCCCCT GGCCCTATCA 003040 003041 TGACCTGAGG TCTTCCCTAC CACTTTGGGG GCTCCCATCT AAAAATGCAT TCTAAGTCCT CTACCTGGAA CTAATTTATC 003120 003121 TCCAGGTCTA CACTACTGAT AACAAGATAT ACGATCCCTT GCAAAGGAAC TTGTAACACC CTGAAATTAC TCAGAAATCA 003200 003201 CACCTCAcag gagattgaga ccatcctggc taacacggtg aaaccccgtc tctaaaaaaa aaagaaagaa aaGAAATCAC 003280 003281 ACCTCACAGG CAAACTCTGT AAGTGGGCTC CTGTAGGAAA GCAGCCTGTT GCATGGCAAG AAAAATGCCA TCTTGAAGTG 003360 003361 AAATCGTCAT TAATTCCTGC ATATCCAGGC ATTCCCACAG CAAGGTCAAG AAACAATGCc tttcgggggt agatctgcat 003440 003441 atacctactc acccagaaca TTTGGTGAGT CAGTCAGGAG CTAAGAGGCC AAGAGACAGG AAAGGGGAAT GAAGCATCTG 003520 003521 TACGGGAAAT CCCAGGCCAG CCACGTCTAT GTGGGATGGT GTGGCACGTC TGTTAGATGC ATTTGGACTC TGTGTGACTA 003600 003601 TGGAGACACC CTGAACAAGC TGGTTGGCCT AGAGTGGTTA TTAACTGAAA GGCATATGGT GCAGTGTGGT AAGGAAGGGC 003680 003681 AGTGGATAGC CACTGCAGTG GGTTGGCTGC TTCTGTGGGC CATTTGTTTG TCAACACAGG TTTAGCTAGC AATAGAAATG 003760 003761 AAAAGCAAAT GGCTAGAGGA AAATTGCACC AACCTGATAG AAAAGGACAT GTGCCTTTTC ACTTCTCTGA TTGCGTCCAG 003840 003841 TGTAGCTACA TGTTTTACCa aaaaaaaaaa gaaaaaaaaa aaGCCTGCTA TAGAAAGAAT ATTtcaggag ggtaggtgtg 003920 003921 gaaatctatg gtctctcagc tgcccaaggc attgcttctg ttcataggtt cctatcaaat gtttctttct gagaaactgg 004000 004001 atttgtcagc ctcttttctc tggcttccca gcttccttgg cctttgaggg ggagacctgc atatatctgt tcactgcaga 004080 004081 acaGCCCCAT ACATGAAATG AATTTTGAGA TTAGAGGAAG AAGTTTCATT TATAAGCCCA AAGCAAACAA TTAGGAAAAA 004160 004161 AAATTATGCT CAGGAAGTTA GGGACTAAGA ACTAACCTAA TTACAGGGCT AAAGAAGGAA ATTTGGCCAA AATAATCTGA 004240 004241 CAGAATGCAA TTTCAACAAA GGCAAATTAA ACCAAGGTAA GTCACTCCAT GTACATTTGT GTCTAAATTA ATATCCCTAG 004320 004321 TCACAAATAA CAACTTAAAC TTATAGAAGT AGTTGATGAA ACCAGCTGAC ACAGAGAGCC ATGTATCAAT CTTGATTATA 004400 004401 GAACCTTCTG GAGATCATGG TTATTTCAAA ATATATGGAC ACTGAGGGTG CATCAAAAGG GCTAAAAGAT TATGGCTAga 004480 004481 agataaaata gatgtgtctc tctattcctt tctctagata tagctaaaat ctctggacat catacataaa cataaaaata 004560 004561 ctcggaaagg tggagacaaa aaaacaggtc agttagggac tttgaaacct taaaaaacag catggcactg aggtctctag 004640 004641 atttcctcgt gccttatata tttcatactg gatgctagag aagcctgcaa cccaaaatac caacatacac tgataaaaga 004720 004721 aaaaaaagcc ccaagaaaac caaggaaggg tcaaagggtc agcctagtga aaaaga |
Predicted Small Protein
Name | NONHSAT103321_smProtein_1748:2020 |
Length | 91 |
Molecular weight | 11132.5108 |
Aromaticity | 0.166666666667 |
Instability index | 48.6245555556 |
Isoelectric point | 10.1321411133 |
Runs | 12 |
Runs residual | 0.00652557319224 |
Runs probability | 0.0464435023259 |
Amino acid sequence | MTERHKKTFRTMKMFCILIVVMVSWMYKFIKSHQVKYMHLFYIKCTSIKQKNLKLVIFIY KLRYLYFLKIKMSDIIWSTYLSAKNTGDRQ |
Secondary structure | LLHHHHHHHHHHHHHHEEHHHHHHHHHHHHHHHLLEEEEEEEEEEEEELLLLLEEEEEEH HHHHHHHHHHLHHHHHHHHHHHHHLLLLLL |
PRMN | LLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLHHHHHHH HHHHHHHHHHHLLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooooooooooooooooooTTTTTTT TTTTTTTTTTTiiiiiiiiiiiiiiiiiii |