NONHSAT103378

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT103378

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

4882 nt

Genomic location

chr5+:116143614..116149816

Exon number

3

Exons

116143614..116143900,116145051..116147613,116147785..116149816

Genome context

Sequence
000001 TCTTTATCCA AATATGCAAA AGGGAACAAG CAATATCAGC TTAAAGGAAA GAAAGAGCAA TATCAGCTCA CCCACACCTT 000080
000081 TAGACCATGG CTTTTGATGC TACTGTCAGA ACTCATCTCA AGAAGCAAAA CACCTGTTAC ATTTCCCAAG CCTTTCTGTT 000160
000161 TTTGTCTCTC CCCTAATAGA CTATCACCAG CAAAGAATTT TCTGAGCAAA TGTGTACTGG AGACCTTCTG AGGAACCCAC 000240
000241 TAGAGCCTGC ACATCCCCTT TTCCTAGCAA GGTCAACTGG AAAACAGttt gccaactgtt ttgaaagtat tagctaattt 000320
000321 aagccttata acaaccctgt tatatctatc tttcagaaat tcagcaaggt taagtgactt gcccaaaatc agagctgaaa 000400
000401 ctctatttct cttcctccaa atccagtgtt ctttccaAGA TAACGTGCAA CTTTCCTTTG GAATGATCAG CAGAATGTCA 000480
000481 AATAAGGAAA GGACATGTAG AGTTCATGGG AGGAGACATT ACTTCTGGCT GCAGAATTAT GGAGGCTTTA TGGGAGACGC 000560
000561 CGTATATTTT ATCTGTGCGC CTTGATCACG TGTCTGACCA TGGACAGAGA AACCAGCCTA ATGAGCCTTC TTTACAGGTG 000640
000641 ACCCTCTAGC CCTTGGTGAA CATCTTGTTT TTATTCTTTC TTAATTCCAA CACTTATTCT TGACAACTTT ACAAATGAAC 000720
000721 AAATCTTATT TACTAAATTG TTGATGTAGT TTTTGTCTAA CACAGGGCTG ATTTTACCCT TGAGAGACGG ACACAAGGCT 000800
000801 TCATTTAGGG GAGGATTAGG TTTGATGTTT ATTCACTGCA CGAGGCAGAt tggttttaga gacatgggtt acagtcttgg 000880
000881 cttttcctgt tactgctttt gggtctttag atgaacattt tgctttctct agactccttc tttatatata aaacaactac 000960
000961 atctttggac ctataataac tgttggtggt ctccaatgag acaaggatat gagggtgctt tgtgaatggc tacccaaatg 001040
001041 taaaatatta ttattattAT TATCATTCAG TATTATAAAA TATTGATAAA AATATTGTCT AGATTTTTCA GACATCTTAG 001120
001121 AAGTCTTCTT TTTCTTCAGG GAAAAAGAGA ACCCTAAATA TCAATTATAA TCAGAATTTC ACAGCAAGTA AAAATACCTG 001200
001201 TGTGTTAATG AAATTAATCC TTAATGAACC AGATGACAAT GACTATTTGA TATCTGACCT TAATTTTTTA AACCAGGCAT 001280
001281 CAAAACACTT AGAAGTGGGT AGGCAGGGTG AGTACAGAAG AGGAGTGGTG GAATTCCCTT TACTGTAGGT TAGTTGGAAA 001360
001361 GAGAGAATCA AGATTCATAT GACTCTCAGG CAAAAAGAGT GGGAAGAGAT AGACTGAAAT CTCCATATTC ACAGGTAAGA 001440
001441 ACAGACATTT CTTGGCCCAA ATGATAAAGC AATGTTCAGC TCTTCTAGTC AAGTCGCCCA TACTGTGGAA TTCCAAGGAA 001520
001521 ACAGTCTTCA CTCCTGTTAA GTGATATTCC TGGCCATTGT CAATGCGCAA GTCCCACAAC AAGGCAGAGA CATTCATGCT 001600
001601 CTTCATTAAC ATTCCCCTAA GGTCTCAGTT TGCATCTCTC TATCCATCTC CTAGCTCTGA AAGGAAGTTT CCTGGGAAAC 001680
001681 CTTTTCTATG AATGGAATGG ATGAGGTTTG TCCCATGAGG GAAGAATTAA AAAAAAAAAA AACAAAAAAC ACACAGACAC 001760
001761 ACACAACAAC AACACAGTAC AACAAAAAAA CTTCTTTCCC ACTGCAGCCA GGAGCAGATT ACGCCTATCT TTTTTCAAGG 001840
001841 ACAGGTGGAA ATTCTGACCA TGTGGTATTC AGTCATACTA GGAATGTTGC TCTCTCAATT TAACAGGAGA GCTTCCTTTC 001920
001921 TTACTGATTA AAAAAGTCAA AAGGGGTTTA AAATTGCTTA GGTAAAAAGA ACTATGGTTG AGTTTTCTCA GCCACAGATA 002000
002001 AACATTGGCT CTTTCTGATC TGCTCTGTTG TCAGCTATGT AATGACTCAG TTTGTGCATT GTTCTCCTTG TTCAGAACAG 002080
002081 AAGGGAGAGT AAACCTTATC CACAGGCTCC TGTTACAAGT AGACCTTCCC CTTCCATCAG AGGTGGGCTT TGTGCGACAC 002160
002161 AGTCAGGACA TTCACAAATT AAAAGATGAA GAACAGCCCA CATTTTCACC AGCTATTGAT ATTCCCTATC CCAGTAAACC 002240
002241 ATGGGTTTTC GTCTGAGTAT TTTTTTCCAA CTTAAAGAGA GAGAGAGAAA GAGAGAATAT GTAGGCTAAC CAGCTCTATT 002320
002321 GCTAACAAAA GAAATAGTTA AGAGAGGAAA ACAACCAGGG ATGAAAATCA GGCTTTTATT TGAATCTTCT TGCTTCTTTT 002400
002401 CAGCACCAGC TTCCTGGCTA ACTTGAGCAT CCTATTCCTG AGCTGGTTGA AATATGCCTt ttttaaaaaa acaactttaa 002480
002481 tgagatataa tttacatacc ataaaattca tctgtttaaa gtatgggact caatggaccc agtggttttt agtatattta 002560
002561 tagatttgtt caaccattac cataatcaat tttataacat tttcatcaat ccaaaaggaa gcccagtacc catttgctga 002640
002641 cactccccat tctccccact ccaccaccag ccctaagcag ccacgaatct accttctgtc tctagagatt tgtctattgg 002720
002721 atctttcata cagaagcatg caataatgtg atttgtttgt ttgttttgtt tttctcaTGT TTTTTATTTC tttatttttt 002800
002801 ttattatact ttaagtttta aggtacatgt gcacacgtgc aggttagtta gagtgagaac atgcggtgtt tggttttttg 002880
002881 tcctttagat agtttgctaa gaatgatggt ttccagctta aatgtgatct tttatgactg gtttctttca cacagaataa 002960
002961 tgttttcaag gttcatccag gctgtagcag cacttcattt ctttgtattg ccaaatacta ttccattgtg tgactataac 003040
003041 acattttatg taccctttca tcttttgatt gacatttggg ttgttcccac tttttgacac ttatgaataa tgatgttgtg 003120
003121 aatattcgtg tataaacttt tgtgtggaca tatattttca tttctctttg gtattgacct aatagtggga ttgcaaggtt 003200
003201 gtgtgtttaa cactatgtta aatattttta ggaagcccca agctgttttc caaagtggtt gtaccatttt acattctcac 003280
003281 cagcaatgta CCAGGGTAAG ACTTATTTGC AATTTTCTCC TGCTTATAGA ATTCTAAAGC TATGTAAAAG GTTAGAAATG 003360
003361 TAACAGGTGG GTCATTTTGA TACTTATTTA GAAAGCCTAC TTTTTCTTTC CAAACTACAA ACATTTCTGT TGTCTAATGA 003440
003441 GCAGATGCTA CCAGCTAATG AAGCAGGAAT ACTAATTTCT TATTTGATTC ATAATAATAT TCAGTAATTA CAGAGGAATC 003520
003521 TTTACTTATC TAGCTTTCTG TGTATATGTG TTCTACAGTA CTAATTTTTC TTTCTTTTCT TTTAAAAATT CACCTTCCTT 003600
003601 ACTGCTTTGT TATTTAATGA TTTGTTCTGA TTATAGACCA TTAATGCCTG TTTAAAAAAA AAGTCCACAT GTGCATTTCA 003680
003681 ATACCTCTTT TATTTTATAC TGATTCAAAG CAATTCAATT CTTCATTCCT AAAAACATTT AGGCTGAGGC ATAAAATAGC 003760
003761 CAATTTAAAC GAAGTAACAT TTAGTCTTTG AAATTGCCGT ATATGTATTC TTCATTTATG CCTACCTGAA AATGTCAGGT 003840
003841 ATGAAATGAA TTTTAGTGAC TCAATTGTTA TTCTATAGGC AAATCCTTAT CTTATAAACA TACTAGATAA CTTTATAAGA 003920
003921 TAAATCTGTT TCTAAGACAA AATTTGTCCA TAATTCTGAA TTTCTTTCTT TCTTTATTTA CTTAATGAAA AGGATGTTTC 004000
004001 ATGAACCTTC TAATTCTTTC CTACTGTGGA TGTTAGTTGG CATTTTGTAT TGAATTTCAA CATTTGAGAA TAAGTCATGG 004080
004081 GTCCAGCTAA TCTGCATAGA CCAATTTGGA GCAGCATCCT TAATGAGTGG TGAACTTTCT CTGTTCTCCA GACAATATCA 004160
004161 ACTCTGCCAC TTGAAACCAA GGCTTCTAAT GACATGAACT GAAGGAAAAG TCTTGATTTC AGATTTTTGT TTGGCCTGTT 004240
004241 TCATCTCCAT TTGCCGACCC TGGATTACGC AGATAGTGCA CTGCTTTTAG TAATCTAGGC CCTTGTGCCA GACCTTGACT 004320
004321 GTCATACTGC ATTATAACTG ATGGTTCAAA TGCTTCTTTT ACATAAGGAG TATTTTCTTC CCAGAGATAC CTCTAAGATA 004400
004401 TTCATGGCTA ACTAAAAATA CTCCTGAATG CTGTTCTCAA GTAGAGTTTC AAGGTCAACA TGAAAATTGT TATCACTCTC 004480
004481 TTATGTGACA TAAAAAAATC TGTTTTATCT TTGTAACAAT GCTTTCATTA AAAAAAAAAA AAAGCTTTGC AATTCCTCTG 004560
004561 CTACACTAGT GTTTTCTCAG ATACCAAACA GGCTATGCCT TGATGGCAAG AAGAACAAGT TATGATTATT TATATGCCAG 004640
004641 TGTGCACTTG TTTCCATCTA GAGTTATAAA CAATTAGTTT ATGATAATCA ATTGTGACAG CAAAAAGGAT TTCTACTCCA 004720
004721 CTAGCTTATA TTTCTAATAA CAGAGAAACA GAAGTAATTT TGATAATGTC TTACGTGTCC AGTGAAGTAA TTTCCCTGTT 004800
004801 ACTGGCTTTT AGCAAGAATT TATAATTAAA TCAGAGAGAA AAAAACACTG GCAGCCAACA TTGTGTCACA TTTATTTCAA 004880
004881 GT
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Predicted Small Protein

Name NONHSAT103378_smProtein_1562:1690
Length 43
Molecular weight 4899.6939
Aromaticity 0.142857142857
Instability index 86.8928571429
Isoelectric point 10.5485229492
Runs 7
Runs residual 0.00949367088608
Runs probability 0.0415751886341
Amino acid sequence MRKSHNKAETFMLFINIPLRSQFASLYPSPSSERKFPGKPFL
Secondary structure LLLLLLHHHHHLLEELLLLLHHHLLLLLLLLLLLLLLLLLLL
PRMN -
PiMo -