NONHSAT103378
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT103378 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
4882 nt |
Genomic location |
chr5+:116143614..116149816 |
Exon number |
3 |
Exons |
116143614..116143900,116145051..116147613,116147785..116149816 |
Genome context |
|
Sequence |
000001 TCTTTATCCA AATATGCAAA AGGGAACAAG CAATATCAGC TTAAAGGAAA GAAAGAGCAA TATCAGCTCA CCCACACCTT 000080
000081 TAGACCATGG CTTTTGATGC TACTGTCAGA ACTCATCTCA AGAAGCAAAA CACCTGTTAC ATTTCCCAAG CCTTTCTGTT 000160 000161 TTTGTCTCTC CCCTAATAGA CTATCACCAG CAAAGAATTT TCTGAGCAAA TGTGTACTGG AGACCTTCTG AGGAACCCAC 000240 000241 TAGAGCCTGC ACATCCCCTT TTCCTAGCAA GGTCAACTGG AAAACAGttt gccaactgtt ttgaaagtat tagctaattt 000320 000321 aagccttata acaaccctgt tatatctatc tttcagaaat tcagcaaggt taagtgactt gcccaaaatc agagctgaaa 000400 000401 ctctatttct cttcctccaa atccagtgtt ctttccaAGA TAACGTGCAA CTTTCCTTTG GAATGATCAG CAGAATGTCA 000480 000481 AATAAGGAAA GGACATGTAG AGTTCATGGG AGGAGACATT ACTTCTGGCT GCAGAATTAT GGAGGCTTTA TGGGAGACGC 000560 000561 CGTATATTTT ATCTGTGCGC CTTGATCACG TGTCTGACCA TGGACAGAGA AACCAGCCTA ATGAGCCTTC TTTACAGGTG 000640 000641 ACCCTCTAGC CCTTGGTGAA CATCTTGTTT TTATTCTTTC TTAATTCCAA CACTTATTCT TGACAACTTT ACAAATGAAC 000720 000721 AAATCTTATT TACTAAATTG TTGATGTAGT TTTTGTCTAA CACAGGGCTG ATTTTACCCT TGAGAGACGG ACACAAGGCT 000800 000801 TCATTTAGGG GAGGATTAGG TTTGATGTTT ATTCACTGCA CGAGGCAGAt tggttttaga gacatgggtt acagtcttgg 000880 000881 cttttcctgt tactgctttt gggtctttag atgaacattt tgctttctct agactccttc tttatatata aaacaactac 000960 000961 atctttggac ctataataac tgttggtggt ctccaatgag acaaggatat gagggtgctt tgtgaatggc tacccaaatg 001040 001041 taaaatatta ttattattAT TATCATTCAG TATTATAAAA TATTGATAAA AATATTGTCT AGATTTTTCA GACATCTTAG 001120 001121 AAGTCTTCTT TTTCTTCAGG GAAAAAGAGA ACCCTAAATA TCAATTATAA TCAGAATTTC ACAGCAAGTA AAAATACCTG 001200 001201 TGTGTTAATG AAATTAATCC TTAATGAACC AGATGACAAT GACTATTTGA TATCTGACCT TAATTTTTTA AACCAGGCAT 001280 001281 CAAAACACTT AGAAGTGGGT AGGCAGGGTG AGTACAGAAG AGGAGTGGTG GAATTCCCTT TACTGTAGGT TAGTTGGAAA 001360 001361 GAGAGAATCA AGATTCATAT GACTCTCAGG CAAAAAGAGT GGGAAGAGAT AGACTGAAAT CTCCATATTC ACAGGTAAGA 001440 001441 ACAGACATTT CTTGGCCCAA ATGATAAAGC AATGTTCAGC TCTTCTAGTC AAGTCGCCCA TACTGTGGAA TTCCAAGGAA 001520 001521 ACAGTCTTCA CTCCTGTTAA GTGATATTCC TGGCCATTGT CAATGCGCAA GTCCCACAAC AAGGCAGAGA CATTCATGCT 001600 001601 CTTCATTAAC ATTCCCCTAA GGTCTCAGTT TGCATCTCTC TATCCATCTC CTAGCTCTGA AAGGAAGTTT CCTGGGAAAC 001680 001681 CTTTTCTATG AATGGAATGG ATGAGGTTTG TCCCATGAGG GAAGAATTAA AAAAAAAAAA AACAAAAAAC ACACAGACAC 001760 001761 ACACAACAAC AACACAGTAC AACAAAAAAA CTTCTTTCCC ACTGCAGCCA GGAGCAGATT ACGCCTATCT TTTTTCAAGG 001840 001841 ACAGGTGGAA ATTCTGACCA TGTGGTATTC AGTCATACTA GGAATGTTGC TCTCTCAATT TAACAGGAGA GCTTCCTTTC 001920 001921 TTACTGATTA AAAAAGTCAA AAGGGGTTTA AAATTGCTTA GGTAAAAAGA ACTATGGTTG AGTTTTCTCA GCCACAGATA 002000 002001 AACATTGGCT CTTTCTGATC TGCTCTGTTG TCAGCTATGT AATGACTCAG TTTGTGCATT GTTCTCCTTG TTCAGAACAG 002080 002081 AAGGGAGAGT AAACCTTATC CACAGGCTCC TGTTACAAGT AGACCTTCCC CTTCCATCAG AGGTGGGCTT TGTGCGACAC 002160 002161 AGTCAGGACA TTCACAAATT AAAAGATGAA GAACAGCCCA CATTTTCACC AGCTATTGAT ATTCCCTATC CCAGTAAACC 002240 002241 ATGGGTTTTC GTCTGAGTAT TTTTTTCCAA CTTAAAGAGA GAGAGAGAAA GAGAGAATAT GTAGGCTAAC CAGCTCTATT 002320 002321 GCTAACAAAA GAAATAGTTA AGAGAGGAAA ACAACCAGGG ATGAAAATCA GGCTTTTATT TGAATCTTCT TGCTTCTTTT 002400 002401 CAGCACCAGC TTCCTGGCTA ACTTGAGCAT CCTATTCCTG AGCTGGTTGA AATATGCCTt ttttaaaaaa acaactttaa 002480 002481 tgagatataa tttacatacc ataaaattca tctgtttaaa gtatgggact caatggaccc agtggttttt agtatattta 002560 002561 tagatttgtt caaccattac cataatcaat tttataacat tttcatcaat ccaaaaggaa gcccagtacc catttgctga 002640 002641 cactccccat tctccccact ccaccaccag ccctaagcag ccacgaatct accttctgtc tctagagatt tgtctattgg 002720 002721 atctttcata cagaagcatg caataatgtg atttgtttgt ttgttttgtt tttctcaTGT TTTTTATTTC tttatttttt 002800 002801 ttattatact ttaagtttta aggtacatgt gcacacgtgc aggttagtta gagtgagaac atgcggtgtt tggttttttg 002880 002881 tcctttagat agtttgctaa gaatgatggt ttccagctta aatgtgatct tttatgactg gtttctttca cacagaataa 002960 002961 tgttttcaag gttcatccag gctgtagcag cacttcattt ctttgtattg ccaaatacta ttccattgtg tgactataac 003040 003041 acattttatg taccctttca tcttttgatt gacatttggg ttgttcccac tttttgacac ttatgaataa tgatgttgtg 003120 003121 aatattcgtg tataaacttt tgtgtggaca tatattttca tttctctttg gtattgacct aatagtggga ttgcaaggtt 003200 003201 gtgtgtttaa cactatgtta aatattttta ggaagcccca agctgttttc caaagtggtt gtaccatttt acattctcac 003280 003281 cagcaatgta CCAGGGTAAG ACTTATTTGC AATTTTCTCC TGCTTATAGA ATTCTAAAGC TATGTAAAAG GTTAGAAATG 003360 003361 TAACAGGTGG GTCATTTTGA TACTTATTTA GAAAGCCTAC TTTTTCTTTC CAAACTACAA ACATTTCTGT TGTCTAATGA 003440 003441 GCAGATGCTA CCAGCTAATG AAGCAGGAAT ACTAATTTCT TATTTGATTC ATAATAATAT TCAGTAATTA CAGAGGAATC 003520 003521 TTTACTTATC TAGCTTTCTG TGTATATGTG TTCTACAGTA CTAATTTTTC TTTCTTTTCT TTTAAAAATT CACCTTCCTT 003600 003601 ACTGCTTTGT TATTTAATGA TTTGTTCTGA TTATAGACCA TTAATGCCTG TTTAAAAAAA AAGTCCACAT GTGCATTTCA 003680 003681 ATACCTCTTT TATTTTATAC TGATTCAAAG CAATTCAATT CTTCATTCCT AAAAACATTT AGGCTGAGGC ATAAAATAGC 003760 003761 CAATTTAAAC GAAGTAACAT TTAGTCTTTG AAATTGCCGT ATATGTATTC TTCATTTATG CCTACCTGAA AATGTCAGGT 003840 003841 ATGAAATGAA TTTTAGTGAC TCAATTGTTA TTCTATAGGC AAATCCTTAT CTTATAAACA TACTAGATAA CTTTATAAGA 003920 003921 TAAATCTGTT TCTAAGACAA AATTTGTCCA TAATTCTGAA TTTCTTTCTT TCTTTATTTA CTTAATGAAA AGGATGTTTC 004000 004001 ATGAACCTTC TAATTCTTTC CTACTGTGGA TGTTAGTTGG CATTTTGTAT TGAATTTCAA CATTTGAGAA TAAGTCATGG 004080 004081 GTCCAGCTAA TCTGCATAGA CCAATTTGGA GCAGCATCCT TAATGAGTGG TGAACTTTCT CTGTTCTCCA GACAATATCA 004160 004161 ACTCTGCCAC TTGAAACCAA GGCTTCTAAT GACATGAACT GAAGGAAAAG TCTTGATTTC AGATTTTTGT TTGGCCTGTT 004240 004241 TCATCTCCAT TTGCCGACCC TGGATTACGC AGATAGTGCA CTGCTTTTAG TAATCTAGGC CCTTGTGCCA GACCTTGACT 004320 004321 GTCATACTGC ATTATAACTG ATGGTTCAAA TGCTTCTTTT ACATAAGGAG TATTTTCTTC CCAGAGATAC CTCTAAGATA 004400 004401 TTCATGGCTA ACTAAAAATA CTCCTGAATG CTGTTCTCAA GTAGAGTTTC AAGGTCAACA TGAAAATTGT TATCACTCTC 004480 004481 TTATGTGACA TAAAAAAATC TGTTTTATCT TTGTAACAAT GCTTTCATTA AAAAAAAAAA AAAGCTTTGC AATTCCTCTG 004560 004561 CTACACTAGT GTTTTCTCAG ATACCAAACA GGCTATGCCT TGATGGCAAG AAGAACAAGT TATGATTATT TATATGCCAG 004640 004641 TGTGCACTTG TTTCCATCTA GAGTTATAAA CAATTAGTTT ATGATAATCA ATTGTGACAG CAAAAAGGAT TTCTACTCCA 004720 004721 CTAGCTTATA TTTCTAATAA CAGAGAAACA GAAGTAATTT TGATAATGTC TTACGTGTCC AGTGAAGTAA TTTCCCTGTT 004800 004801 ACTGGCTTTT AGCAAGAATT TATAATTAAA TCAGAGAGAA AAAAACACTG GCAGCCAACA TTGTGTCACA TTTATTTCAA 004880 004881 GT |
Predicted Small Protein
Name | NONHSAT103378_smProtein_1562:1690 |
Length | 43 |
Molecular weight | 4899.6939 |
Aromaticity | 0.142857142857 |
Instability index | 86.8928571429 |
Isoelectric point | 10.5485229492 |
Runs | 7 |
Runs residual | 0.00949367088608 |
Runs probability | 0.0415751886341 |
Amino acid sequence | MRKSHNKAETFMLFINIPLRSQFASLYPSPSSERKFPGKPFL |
Secondary structure | LLLLLLHHHHHLLEELLLLLHHHLLLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |