NONHSAT103430
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT103430 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
3590 nt |
Genomic location |
chr5+:118572009..118584815 |
Exon number |
5 |
Exons |
118572009..118573109,118574684..118574775,118576114..118576166,118580054..118580271,118582690..118584815 |
Genome context |
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Sequence |
000001 ttaagtgatg ctctttaaca aaactttccc atttctagat gtctatccta cataattatg caaaggtata tgtatatata 000080
000081 ggaatgttca aagcagccct ttttatatta cagaaaattg aaaacggtat ggggaaagtt ttaaattgta ataccactgt 000160 000161 acagtgtaat actacacaca gcacaagaat gatctaaatt tatgtgtaat tacctgggaa agatagctat aataaataaa 000240 000241 aaatgtaatt gtgtagtggt attattatga tcccaatttt ttaaatgcta tattgtgaat ttttgaatac tcatagaaac 000320 000321 aaatctgaaa ggaagcacat caaattgtta atagatgtta gatctagAGG CAGAGGAGGG TGGGAGTACA AAGCAGACAT 000400 000401 TTATTTTATA TACTTTATAA TAAGCTGCGT TATTTTTATA ATCAAAGGGA AAAAATTTAG CTGTCTTACT CATCCTTCAA 000480 000481 GATCTGTATC AAGAATACCT CCCTTAGTGG ATTATTTTGA CATCTTACCA GTCAGACTTG CCCTGAGCTC CCATAGCGGA 000560 000561 ATTATTTTAC TTTGATAATC CTTATATCAT TTTACTTTGT ACTCTTGTTC ATGTGTTTTC CTTATTGTTT GTTTCTGAAA 000640 000641 ATCCTTATTT TATCTTTCTG GAAATGAACA GTTTTCTTTC TTATATATGA TAAAGTTCTG TCACATAGCA TAATCTGTTA 000720 000721 ATCCAGTATC CTGTTTTTGT AATACTTACA GAGAATATAT AGACTATGCT AGAGGCTACT GTAATAAAAT GGGTGTCTGA 000800 000801 TGTTTGTTCT CTTTATGTTC ACCCTGGGAT TTTTAAAGTA GTAGCTGAAT GTTTTTCTGA AATAGATCCA TGTATAGGTG 000880 000881 AAGTGAAAAA TCACATGACA TACAGTCAAA TGTTTACGAG TCAAAATATG GGTGTCACAC TGAGGGTAAG GATAAATATA 000960 000961 TGCttttata tttatattaa atacttttaa atattttCTT TCTCTAAGTT TGGAATAGTT GATGCTGATG GATATTTAAG 001040 001041 TTTGTATCAA ACAAACTGGA AATGTTGTCC AGTTACTGGA AGCATGCCTA AGCCATACCT GACTTGGCAG TGTCATAACA 001120 001121 AAACAGCCAA TGATTTTGTC TTCGTTAGTT CCTCCTCTCT GATAGCTACA GCTGGTCTTT CAACTGACAA TAGAAACGTA 001200 001201 TGTTTGTGGG ATACTCTTGT AGCACCTGCC AATAGTTTAG TCCATGCATT TACCTGCCAT GACAGTGGAG CCACAGTTTT 001280 001281 AGCATATGCT CCAAAACATC AGCTACTAAT ATCAGGTGGC AGAAAAGGTT TTACATATGT ATTTGACCTT TGTCAACGAC 001360 001361 AACAGAGGCA GCTTTTCCAG AGCCATGATT CTCCTGTTAA AGCCGTTGCT GTTGATCCAA CTGAAGAGTA CTTTGTTACA 001440 001441 GGATCTGCCG AAGGCAATAT AAAGATTTGG AGTCTCTCTA CCTTTGGTCT TCTCCATACT TTTGTCAGTG AACATGCTCG 001520 001521 GCAGTCCATT TTTAGAAATA TTGGAACTGG AGTGATGCAA ATTGAGACAG GGCCTGCAAA TCACATTTTC TCCTGTGGAG 001600 001601 CTGATGGAAC AATGAAAATG AGAATACTGC CAGATCAGTT TAGCCCTTTA AATGAAGTGT TGAAAAATGA TGTGAAATTT 001680 001681 ATGCTATAAC ATTTTTACAA TAAGATGTAC AATTTATTAC CTATATGGAA GTGGCCAACA GATATAATAT ACAGTGATCA 001760 001761 TTCTCTATGC CACAAATTAG CTAATGCTTT CTTGTTTTTA TATTTATTTT ATGGAGCTTT GCCCTTGATG CACTGATGCC 001840 001841 TTAAAAATTA ACAAGGTCAT TCAGAAGTAG ATTACATTGC CTAAAGTAGA ATGTGTAAGT AATGCTGTAA TAATACATAT 001920 001921 CATAGTATAT TATAATCAGT ATGTCATAGT GTTAAAGGTG TTTTGTTTTC TTATTGATAC TTTTCCACAG GCATCTCTGC 002000 002001 ATGAATTTCT TCCACAGTAA AAATACGTTT TTTGTAAAGG CAATTGTACA TAATACTCAT CACTTAATTC ACCACACTCT 002080 002081 CACTTCCTTT ATTAGCCTTA TACATCTCAA ACTCTTCTCT TAATTAATGA TAGGTATTTG AGTAAGAATG AAAAAAATAA 002160 002161 TGAACATCTT CATTAAAATT GTCATTGAGA CGTCAGTGAT AAATGAGCTA GATGGCTCAA TATGTAAGGT TTTCAGTAGT 002240 002241 TTACCCTCCG GAACCCAAGT tgtatgtatg tatacgtgtg tgtgtgtgtg tgtgtgtgtA TCTTACACAT CTTATTTGAA 002320 002321 CTTAGTTGTA TATATTAGCG AAAACTGGTT TTTCATGTGT TTTTGTGCCA TAACAACTAT TGCCACCAGA ATAACTTTTT 002400 002401 TTTTGCAACT GTGCTTTTCA TTTTTAAAAA ATTTTTGAAT TCCCATCCTA ATTTTCAAAT AAGTTTCAAG GAGACTATCA 002480 002481 GGATTATTAT TTTAAAGATT AGATTTAGTC AAATAAGTCT TAGCAGGCAA TAAAGTTTCT GTGGTGGCAT ATATCATGTA 002560 002561 AGACACTTAA AGTAAGTTTG TGAATTTGTC AACTTTCGAG CATCAAACaa atattttact taaattttat tttatcttat 002640 002641 ttttaGGTGC TTTTAATCTC AAAATTCTGA AAAGCGAATA GCAGTGTTTT CAGAAACAAA TGTGAAAGCA GTCAAATTAA 002720 002721 GTAGATACTA TTTAGAAATG TAAAATACTC TCCAGATCTA CCATTAATAG AAAATAAACT AAACCTTATA TTTTATTTTT 002800 002801 GCCaaaatat tttattataa aatatGACCA AAATATTTAA AATGCACAAT GCTTTTAACT TAAATGTGCT AACCCTGTTT 002880 002881 CTGTCTGTTT TGTGCTGTAC CTTTTCTGAT TCAGAATTAT AGAAAACTTG ATAAATACTT GATTTTAACC AATGAGACTA 002960 002961 CAGGCAGATG GGACTAAGTG TTTATGGGAC AATTATGTAC TATTTAACTT AAATATATTT TGTTTAATAG GAAATATATA 003040 003041 ATAATAGCAT TTTATGTAAT AAAATATGGG CAACGATTAT CTTGGAAATT AAAGAGTCAA AGCAAAGAAA TGAAGGGCTG 003120 003121 GTAAAATGAA TTTTGTAATA TCCTCAGGAT ACTTTTATCT TAAAAGTATG TTGTTAAAGA TTTTGTAAAT TGTATTTCAA 003200 003201 CAATTTTAAA TGTGTTGAGC AAGTTGCAGT GCAAACACTG TCATTATGTA GAGAGTTTAT ATGCACATAA TAACCTGTAC 003280 003281 CTATAAATCG TGCAATAACC ATATGCGACT ATTTTGCCAT GGAGAAATCT GACAGCATTG CAAACAATAG TATTGTTTGA 003360 003361 TGTAGTTAAC CTTAAGTTAT TTTTCAGTAA TTTCTTCACA AATCAAGATT CAAACAGCTT TAAACACTTC CAATGAGATA 003440 003441 AAATATTTAC TATTATGCTT ATTAGAACAA AAGGTGTTTA AGGATGAACT AAATATTTTA ATTGAGCATT TATATGGATA 003520 003521 ATCATACATT ATGTAAGCCC ATATGTATTT ACATCCAGAG TCATAATATT TTAAATAAAC AATCATGCAG |
Predicted Small Protein
Name | NONHSAT103430_smProtein_284:574 |
Length | 97 |
Molecular weight | 11215.1957 |
Aromaticity | 0.125 |
Instability index | 50.3072916667 |
Isoelectric point | 9.76239013672 |
Runs | 14 |
Runs residual | 0.0115979381443 |
Runs probability | 0.0339793575088 |
Amino acid sequence | MLYCEFLNTHRNKSERKHIKLLIDVRSRGRGGWEYKADIYFIYFIISCVIFIIKGKKFSC LTHPSRSVSRIPPLVDYFDILPVRLALSSHSGIILL |
Secondary structure | LEEELLLLLLLLLLHHHHHHEEEEEELLLLLLEEEEEEEEEEEEEEEEEEEEEELLLEEE ELLLLLLLLLLLLLLLLLLLLLEEEEELLLLLEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLL LLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooo ooooooooooooooooTTTTTTTTTTTTTTTTTTTi |