NONHSAT103430

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT103430

Source

NONCODE4.0

Same with

,

Classification

sense

Length

3590 nt

Genomic location

chr5+:118572009..118584815

Exon number

5

Exons

118572009..118573109,118574684..118574775,118576114..118576166,118580054..118580271,118582690..118584815

Genome context

Sequence
000001 ttaagtgatg ctctttaaca aaactttccc atttctagat gtctatccta cataattatg caaaggtata tgtatatata 000080
000081 ggaatgttca aagcagccct ttttatatta cagaaaattg aaaacggtat ggggaaagtt ttaaattgta ataccactgt 000160
000161 acagtgtaat actacacaca gcacaagaat gatctaaatt tatgtgtaat tacctgggaa agatagctat aataaataaa 000240
000241 aaatgtaatt gtgtagtggt attattatga tcccaatttt ttaaatgcta tattgtgaat ttttgaatac tcatagaaac 000320
000321 aaatctgaaa ggaagcacat caaattgtta atagatgtta gatctagAGG CAGAGGAGGG TGGGAGTACA AAGCAGACAT 000400
000401 TTATTTTATA TACTTTATAA TAAGCTGCGT TATTTTTATA ATCAAAGGGA AAAAATTTAG CTGTCTTACT CATCCTTCAA 000480
000481 GATCTGTATC AAGAATACCT CCCTTAGTGG ATTATTTTGA CATCTTACCA GTCAGACTTG CCCTGAGCTC CCATAGCGGA 000560
000561 ATTATTTTAC TTTGATAATC CTTATATCAT TTTACTTTGT ACTCTTGTTC ATGTGTTTTC CTTATTGTTT GTTTCTGAAA 000640
000641 ATCCTTATTT TATCTTTCTG GAAATGAACA GTTTTCTTTC TTATATATGA TAAAGTTCTG TCACATAGCA TAATCTGTTA 000720
000721 ATCCAGTATC CTGTTTTTGT AATACTTACA GAGAATATAT AGACTATGCT AGAGGCTACT GTAATAAAAT GGGTGTCTGA 000800
000801 TGTTTGTTCT CTTTATGTTC ACCCTGGGAT TTTTAAAGTA GTAGCTGAAT GTTTTTCTGA AATAGATCCA TGTATAGGTG 000880
000881 AAGTGAAAAA TCACATGACA TACAGTCAAA TGTTTACGAG TCAAAATATG GGTGTCACAC TGAGGGTAAG GATAAATATA 000960
000961 TGCttttata tttatattaa atacttttaa atattttCTT TCTCTAAGTT TGGAATAGTT GATGCTGATG GATATTTAAG 001040
001041 TTTGTATCAA ACAAACTGGA AATGTTGTCC AGTTACTGGA AGCATGCCTA AGCCATACCT GACTTGGCAG TGTCATAACA 001120
001121 AAACAGCCAA TGATTTTGTC TTCGTTAGTT CCTCCTCTCT GATAGCTACA GCTGGTCTTT CAACTGACAA TAGAAACGTA 001200
001201 TGTTTGTGGG ATACTCTTGT AGCACCTGCC AATAGTTTAG TCCATGCATT TACCTGCCAT GACAGTGGAG CCACAGTTTT 001280
001281 AGCATATGCT CCAAAACATC AGCTACTAAT ATCAGGTGGC AGAAAAGGTT TTACATATGT ATTTGACCTT TGTCAACGAC 001360
001361 AACAGAGGCA GCTTTTCCAG AGCCATGATT CTCCTGTTAA AGCCGTTGCT GTTGATCCAA CTGAAGAGTA CTTTGTTACA 001440
001441 GGATCTGCCG AAGGCAATAT AAAGATTTGG AGTCTCTCTA CCTTTGGTCT TCTCCATACT TTTGTCAGTG AACATGCTCG 001520
001521 GCAGTCCATT TTTAGAAATA TTGGAACTGG AGTGATGCAA ATTGAGACAG GGCCTGCAAA TCACATTTTC TCCTGTGGAG 001600
001601 CTGATGGAAC AATGAAAATG AGAATACTGC CAGATCAGTT TAGCCCTTTA AATGAAGTGT TGAAAAATGA TGTGAAATTT 001680
001681 ATGCTATAAC ATTTTTACAA TAAGATGTAC AATTTATTAC CTATATGGAA GTGGCCAACA GATATAATAT ACAGTGATCA 001760
001761 TTCTCTATGC CACAAATTAG CTAATGCTTT CTTGTTTTTA TATTTATTTT ATGGAGCTTT GCCCTTGATG CACTGATGCC 001840
001841 TTAAAAATTA ACAAGGTCAT TCAGAAGTAG ATTACATTGC CTAAAGTAGA ATGTGTAAGT AATGCTGTAA TAATACATAT 001920
001921 CATAGTATAT TATAATCAGT ATGTCATAGT GTTAAAGGTG TTTTGTTTTC TTATTGATAC TTTTCCACAG GCATCTCTGC 002000
002001 ATGAATTTCT TCCACAGTAA AAATACGTTT TTTGTAAAGG CAATTGTACA TAATACTCAT CACTTAATTC ACCACACTCT 002080
002081 CACTTCCTTT ATTAGCCTTA TACATCTCAA ACTCTTCTCT TAATTAATGA TAGGTATTTG AGTAAGAATG AAAAAAATAA 002160
002161 TGAACATCTT CATTAAAATT GTCATTGAGA CGTCAGTGAT AAATGAGCTA GATGGCTCAA TATGTAAGGT TTTCAGTAGT 002240
002241 TTACCCTCCG GAACCCAAGT tgtatgtatg tatacgtgtg tgtgtgtgtg tgtgtgtgtA TCTTACACAT CTTATTTGAA 002320
002321 CTTAGTTGTA TATATTAGCG AAAACTGGTT TTTCATGTGT TTTTGTGCCA TAACAACTAT TGCCACCAGA ATAACTTTTT 002400
002401 TTTTGCAACT GTGCTTTTCA TTTTTAAAAA ATTTTTGAAT TCCCATCCTA ATTTTCAAAT AAGTTTCAAG GAGACTATCA 002480
002481 GGATTATTAT TTTAAAGATT AGATTTAGTC AAATAAGTCT TAGCAGGCAA TAAAGTTTCT GTGGTGGCAT ATATCATGTA 002560
002561 AGACACTTAA AGTAAGTTTG TGAATTTGTC AACTTTCGAG CATCAAACaa atattttact taaattttat tttatcttat 002640
002641 ttttaGGTGC TTTTAATCTC AAAATTCTGA AAAGCGAATA GCAGTGTTTT CAGAAACAAA TGTGAAAGCA GTCAAATTAA 002720
002721 GTAGATACTA TTTAGAAATG TAAAATACTC TCCAGATCTA CCATTAATAG AAAATAAACT AAACCTTATA TTTTATTTTT 002800
002801 GCCaaaatat tttattataa aatatGACCA AAATATTTAA AATGCACAAT GCTTTTAACT TAAATGTGCT AACCCTGTTT 002880
002881 CTGTCTGTTT TGTGCTGTAC CTTTTCTGAT TCAGAATTAT AGAAAACTTG ATAAATACTT GATTTTAACC AATGAGACTA 002960
002961 CAGGCAGATG GGACTAAGTG TTTATGGGAC AATTATGTAC TATTTAACTT AAATATATTT TGTTTAATAG GAAATATATA 003040
003041 ATAATAGCAT TTTATGTAAT AAAATATGGG CAACGATTAT CTTGGAAATT AAAGAGTCAA AGCAAAGAAA TGAAGGGCTG 003120
003121 GTAAAATGAA TTTTGTAATA TCCTCAGGAT ACTTTTATCT TAAAAGTATG TTGTTAAAGA TTTTGTAAAT TGTATTTCAA 003200
003201 CAATTTTAAA TGTGTTGAGC AAGTTGCAGT GCAAACACTG TCATTATGTA GAGAGTTTAT ATGCACATAA TAACCTGTAC 003280
003281 CTATAAATCG TGCAATAACC ATATGCGACT ATTTTGCCAT GGAGAAATCT GACAGCATTG CAAACAATAG TATTGTTTGA 003360
003361 TGTAGTTAAC CTTAAGTTAT TTTTCAGTAA TTTCTTCACA AATCAAGATT CAAACAGCTT TAAACACTTC CAATGAGATA 003440
003441 AAATATTTAC TATTATGCTT ATTAGAACAA AAGGTGTTTA AGGATGAACT AAATATTTTA ATTGAGCATT TATATGGATA 003520
003521 ATCATACATT ATGTAAGCCC ATATGTATTT ACATCCAGAG TCATAATATT TTAAATAAAC AATCATGCAG
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Predicted Small Protein

Name NONHSAT103430_smProtein_284:574
Length 97
Molecular weight 11215.1957
Aromaticity 0.125
Instability index 50.3072916667
Isoelectric point 9.76239013672
Runs 14
Runs residual 0.0115979381443
Runs probability 0.0339793575088
Amino acid sequence MLYCEFLNTHRNKSERKHIKLLIDVRSRGRGGWEYKADIYFIYFIISCVIFIIKGKKFSC
LTHPSRSVSRIPPLVDYFDILPVRLALSSHSGIILL
Secondary structure LEEELLLLLLLLLLHHHHHHEEEEEELLLLLLEEEEEEEEEEEEEEEEEEEEEELLLEEE
ELLLLLLLLLLLLLLLLLLLLLEEEEELLLLLEEEL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLL
LLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHL
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