NONHSAT103586
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT103586 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1721 nt |
Genomic location |
chr5+:125832580..125834296 |
Exon number |
2 |
Exons |
125832580..125834229,125834236..125834296 |
Genome context |
|
Sequence |
000001 ACCATCATGT TACCATATTC TTGCCAAAAA AAAAAAAAAA AAAAAAAAAA CACCAGAGTC GTTACATGAA GTATCTTTGA 000080
000081 TCACTGAATT TCCAGCACTT CTTTGTTGTG TCTAGATGCT AAGCCCTTTT CTAATTTGAA AAAAAAAAAA AAACAAAAAA 000160 000161 CTGGAGACCT GATTCTGTTT ATCTCTTGTA GTTTCTCTTA TCTCTGTTTC TAACCACTCT ATGTAGTGCC TCTTTTTTTC 000240 000241 TGTCTACACA CACACGGAGC ATCCACCATA CCAATAATCA CAGTATGTGG TAATGAAAAG TGGAAGGGAA AAATGGCCCT 000320 000321 TGCTTCTCAC AGACAAACTC ACTATCTCAA TGGATCATTT TTGTTTTTTT GTTTTGTTTT GTTTTTGAGA CAGTCTCACT 000400 000401 CTGTTGCGCA GGCTGGAGTG CAGTAGTGCA ATCTTAGCTC ACTACAACCT CTGCCCCCGG GTTCAAGCAA TTCTCCTGCC 000480 000481 TCAGCCTCCT GAGTAGCTGG GATTACGGCA CCTGCCACCA TGCCCTGCTA ATTTTTGTTT TTTTAGTAGA GATAGGGTTT 000560 000561 CACCATGTTG GCCAGGCTGG TCTCGAACTC CTGACCTCAA GTGATCTGCC CGCCTCGGCC TCCCAAAGTG CTGAAATTAC 000640 000641 AGGCATGAGC CACAGCGCCC CGCCTCAATG GATCCTGATG AGCTACGCAA ACCATTATTT TTATGTCTTT ACGAATGCCA 000720 000721 CCAGAAAGTT TCATTTTGTT CTTTCTGAAA ACAACCATGA TTATAAGATG TCTTCTGAAA CACGGAAGTG AGAGAACATG 000800 000801 TTGTACAGAG AAGCATGCAT CCCTCTGCCC TGCCACCACT GCACCTATGC TAAGCATATT ATAGACAGAA GGATGTCCAT 000880 000881 CTGCCTATGT AAGCTCTTGC CCGTTTATTC TTGGGCTCTG TCCAGGCTGT GACCCTATTA CTCCTTTGCT CCTTCATTTG 000960 000961 AGGACTATGA CTGTGAACTG TATTTCTTCC TCTCTGCACC TATATAGGCT ACAGGAGGAA GTAACAAAAA TCTTCCCCCA 001040 001041 CACCCAGAGC TAAATATTTT TTGCCCCAAG CTGAAAGTTC TCTAGTGAAA ATGCAGTTCA AGGCCATAGA TGCAGGAGAG 001120 001121 AAGTAGATTT GTTGGCTTCT AAAAGGAATA TCTATACAGA TTTGTCTAAC AGCACCATCC TAACAGCATT CTGATTTGTT 001200 001201 TTATTTTCCA TTTTTAATAC CTTTGTTGAT GTGTAATTTA CATACAGTAA ACTACACACT TAATGTATAC AATATTATAA 001280 001281 GTTTTTATGT ACATGTGTAC TCGAGAAACC ATCACCACTA TCAAGATAAT AAACATCCAT CACCCCTTGG AGAAATCACG 001360 001361 TTGCAATCCC TCTCTTGTGC CCCTACCTAC ATTCTCCGTT CTAAGGAACT GCTGATCTTC TTTCTGTCTC TGTAGATTAG 001440 001441 TTTGCATTTT CTAGAATTTT ATATAAATGG AGCCATATAA TATGTACTCT TTTTTTGGTC TGGATTCTTT CCATCAACAT 001520 001521 AATTATCTTG AGATTTATCC ATTTTTTGCA TGTTTCAATA GTTTATGCCT TTTTATTGCT CAACAGTATT CCATTGTATG 001600 001601 TATATACCAC AGACTGTTTA TCCATTTGCC TGTAGATGGA TATTTGGGTT GTTTCTAGTT TTGTTGTTGT TGTTGTTGTT 001680 001681 GTTGTTACCA ATAAAGCTGC TGTGAACATT TGGCACCAGT C |
Predicted Small Protein
Name | NONHSAT103586_smProtein_1466:1657 |
Length | 64 |
Molecular weight | 7588.7143 |
Aromaticity | 0.253968253968 |
Instability index | 48.3888888889 |
Isoelectric point | 5.59124755859 |
Runs | 10 |
Runs residual | 0.0137674117266 |
Runs probability | 0.0620561738209 |
Amino acid sequence | MEPYNMYSFFGLDSFHQHNYLEIYPFFACFNSLCLFIAQQYSIVCIYHRLFIHLPVDGYL GCF |
Secondary structure | LLLLLLLEELLLLLLLLLLLEEEELHHHHHHHHHHHHHHHHHHEEHHHHHEEEELLLLLL LLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLL LLL |
PiMo | ooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTTTTiiiiiiiiii iii |