NONHSAT103586

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT103586

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1721 nt

Genomic location

chr5+:125832580..125834296

Exon number

2

Exons

125832580..125834229,125834236..125834296

Genome context

Sequence
000001 ACCATCATGT TACCATATTC TTGCCAAAAA AAAAAAAAAA AAAAAAAAAA CACCAGAGTC GTTACATGAA GTATCTTTGA 000080
000081 TCACTGAATT TCCAGCACTT CTTTGTTGTG TCTAGATGCT AAGCCCTTTT CTAATTTGAA AAAAAAAAAA AAACAAAAAA 000160
000161 CTGGAGACCT GATTCTGTTT ATCTCTTGTA GTTTCTCTTA TCTCTGTTTC TAACCACTCT ATGTAGTGCC TCTTTTTTTC 000240
000241 TGTCTACACA CACACGGAGC ATCCACCATA CCAATAATCA CAGTATGTGG TAATGAAAAG TGGAAGGGAA AAATGGCCCT 000320
000321 TGCTTCTCAC AGACAAACTC ACTATCTCAA TGGATCATTT TTGTTTTTTT GTTTTGTTTT GTTTTTGAGA CAGTCTCACT 000400
000401 CTGTTGCGCA GGCTGGAGTG CAGTAGTGCA ATCTTAGCTC ACTACAACCT CTGCCCCCGG GTTCAAGCAA TTCTCCTGCC 000480
000481 TCAGCCTCCT GAGTAGCTGG GATTACGGCA CCTGCCACCA TGCCCTGCTA ATTTTTGTTT TTTTAGTAGA GATAGGGTTT 000560
000561 CACCATGTTG GCCAGGCTGG TCTCGAACTC CTGACCTCAA GTGATCTGCC CGCCTCGGCC TCCCAAAGTG CTGAAATTAC 000640
000641 AGGCATGAGC CACAGCGCCC CGCCTCAATG GATCCTGATG AGCTACGCAA ACCATTATTT TTATGTCTTT ACGAATGCCA 000720
000721 CCAGAAAGTT TCATTTTGTT CTTTCTGAAA ACAACCATGA TTATAAGATG TCTTCTGAAA CACGGAAGTG AGAGAACATG 000800
000801 TTGTACAGAG AAGCATGCAT CCCTCTGCCC TGCCACCACT GCACCTATGC TAAGCATATT ATAGACAGAA GGATGTCCAT 000880
000881 CTGCCTATGT AAGCTCTTGC CCGTTTATTC TTGGGCTCTG TCCAGGCTGT GACCCTATTA CTCCTTTGCT CCTTCATTTG 000960
000961 AGGACTATGA CTGTGAACTG TATTTCTTCC TCTCTGCACC TATATAGGCT ACAGGAGGAA GTAACAAAAA TCTTCCCCCA 001040
001041 CACCCAGAGC TAAATATTTT TTGCCCCAAG CTGAAAGTTC TCTAGTGAAA ATGCAGTTCA AGGCCATAGA TGCAGGAGAG 001120
001121 AAGTAGATTT GTTGGCTTCT AAAAGGAATA TCTATACAGA TTTGTCTAAC AGCACCATCC TAACAGCATT CTGATTTGTT 001200
001201 TTATTTTCCA TTTTTAATAC CTTTGTTGAT GTGTAATTTA CATACAGTAA ACTACACACT TAATGTATAC AATATTATAA 001280
001281 GTTTTTATGT ACATGTGTAC TCGAGAAACC ATCACCACTA TCAAGATAAT AAACATCCAT CACCCCTTGG AGAAATCACG 001360
001361 TTGCAATCCC TCTCTTGTGC CCCTACCTAC ATTCTCCGTT CTAAGGAACT GCTGATCTTC TTTCTGTCTC TGTAGATTAG 001440
001441 TTTGCATTTT CTAGAATTTT ATATAAATGG AGCCATATAA TATGTACTCT TTTTTTGGTC TGGATTCTTT CCATCAACAT 001520
001521 AATTATCTTG AGATTTATCC ATTTTTTGCA TGTTTCAATA GTTTATGCCT TTTTATTGCT CAACAGTATT CCATTGTATG 001600
001601 TATATACCAC AGACTGTTTA TCCATTTGCC TGTAGATGGA TATTTGGGTT GTTTCTAGTT TTGTTGTTGT TGTTGTTGTT 001680
001681 GTTGTTACCA ATAAAGCTGC TGTGAACATT TGGCACCAGT C
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Predicted Small Protein

Name NONHSAT103586_smProtein_1466:1657
Length 64
Molecular weight 7588.7143
Aromaticity 0.253968253968
Instability index 48.3888888889
Isoelectric point 5.59124755859
Runs 10
Runs residual 0.0137674117266
Runs probability 0.0620561738209
Amino acid sequence MEPYNMYSFFGLDSFHQHNYLEIYPFFACFNSLCLFIAQQYSIVCIYHRLFIHLPVDGYL
GCF
Secondary structure LLLLLLLEELLLLLLLLLLLEEEELHHHHHHHHHHHHHHHHHHEEHHHHHEEEELLLLLL
LLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLL
LLL
PiMo ooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTTTTiiiiiiiiii
iii