NONHSAT103635
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT103635 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1870 nt |
Genomic location |
chr5-:127276135..127419299 |
Exon number |
4 |
Exons |
127276135..127276912,127292496..127292613,127396836..127396936,127418427..127419299 |
Genome context |
|
Sequence |
000001 GATCCGGCCC TCCGCGGCTC CTGCGCGACC CCACGCAAAA GCGCCCCGTG CGAAGAGCGC GGCCAGCCAG TCCGCAAAGG 000080
000081 GCCTCGGGCA GTGCGGGCAG CACGAACGGC GCGATCGGGG AGCAGGCGCG GCTACGCTCC GCCTCAGTGA TGTCGCCGGG 000160 000161 AGGATCTCCG CGCGGCTACC TCCTCTTCCG CCGCCTTCCT CCCACGCCTT CACCTCCCTC CCCCGCCGCG CTCTGCGGCG 000240 000241 AAAAGGAGCG GGCTCCCAGG CCACCTCCCC TCTCTCCACC CAGGGGCCGC GCGTCAGTGG ACCTGCAGCC CAGGCAACGG 000320 000321 GGCTGCGGAC GGCGCGCGTG CCCTGCCTCG CCTCACGCCG GTAGCTGATG CTCCCGCGGC AGCTGCCACC CCAGCGCCCC 000400 000401 AGCCACGGCT TCAGAGGCTC TCGCACGCTG GCTTTTTTTT TTTCCCCCCG CTTTGGTGAA CTCGCAGTAC TTGGGCTGAG 000480 000481 CCCGAAATCT CGCGAGATGC TGCAGGCGTC AGTGCGGCTT CCCACTAGGC GCGTGGTACC CGAGGCCGGG CCGGAGCCGC 000560 000561 AGGCCAGCCG CGATTCCTTC GGGCGATGCT GGGGGCTTTC CGGTCGGGGC CGCAGCCGCT TCCGGAGCCG CGGGCGAGGT 000640 000641 GCGTTCCCCA GCCTGGTTTG CTCTGGGCTC TGACCCGCCG CCGCGAATCT CCGCTCGTAA CTCCGGGCCT GAACCTGGAG 000720 000721 GAGGGAGGAT TTCCTCTGTG CAGCTTTCGA GCGGTAGACT CACCCTGCCA GGCAGACCTA GATTGGCATA ACCAGAGATC 000800 000801 AGTTCCAGTT GTGATGCAGT GGGTGTCTAC ACACTTCTGA TGACACCTTT ATTTTAAAAG CTGATGTTCC AAGGTGCAAG 000880 000881 CGGTCTTCTC TGTCTTCTTT ATGGCCAGTA AAATTCTCCA GAAGAGATTT ATGGCAGCCT CACTCCCAGT AGTTTCTGCA 000960 000961 TTTAGTGAGA TAAGATGGAA TCTTGCTCTC TTGCTCAGAC TGGAGTGCAG TGGCATGACC TTGGCTCACT GCAACCTCAC 001040 001041 CTCTCGGGTT CAAGCGATTC TGCCTCAGCC TCTCGAGTAG CTGGGACTAC AGGTGGGAGA CCTCCACAGA ACCCTTCCAG 001120 001121 CAAGCTGTCT TCTAAAGCAA ACAAGAAAAG GAAAGTCTGA GCAGTTTTGA TTAGATTTCC CAGAAGTCAA AGCAAGGAAA 001200 001201 AATGAAAAAG CTTCATTTCT CACGTTCTTA AAAGAGAGCA CAGATGTTGC ATCATCTGGT TAGATACCCT GAGAATAAAA 001280 001281 TCTGGATCCA GTGAGAGGAA AGATTCTGGG TGCTCATGAA AAAAGAAACA AAACAAAACT TGGGAGCCTC TTGAGAGTGT 001360 001361 ACAGCATCAG CCCTTGCCAA CTCTTGTTTA TATGCATTTA ACTTTCAGTT AACCATGGGA ATAATTCATG AAAATCCAAT 001440 001441 CTACAAACAA AGGCCATCCT AACGTTCATG TTATTCTTTT CCCTAAGAAT CTTTCACAAG AGCTATAATC AAGTAGAATT 001520 001521 ATGCTTTGAT TTGAATTCTA ATTCAATTGA AAATAAAAAA TGAGGGCCGG ACGCGGTGGC TCATGCCTGT AATCCCAGCG 001600 001601 CTTTGGGAGG CTGAGGTGGA CGGATCACGA GGTCAGGAGA TCGAGACCAT CCTGGCTAAC ACGGTGAAAC CCGATCCCTA 001680 001681 CTAAAAATAC AAAAAATTAG CCGGGCGTGG TGGCAGGCGC CTGTAGTCCC AGCTACTCGG GAGGCTGAGG CAGGAGAATG 001760 001761 GCGTGAACCC AGGAGGCAGA GGTTGCAGTG AGCCGAGATC ATGCTACTGC ACTCCAGCCT GGGCGACAGA GCGAGACTCT 001840 001841 GTGTATAAAT AAATAAATAA ATAAATAAAT |
Predicted Small Protein
Name | NONHSAT103635_smProtein_149:367 |
Length | 73 |
Molecular weight | 7562.6281 |
Aromaticity | 0.0277777777778 |
Instability index | 108.920833333 |
Isoelectric point | 11.5856323242 |
Runs | 7 |
Runs residual | 0.0436942416869 |
Runs probability | 0.043568778863 |
Amino acid sequence | MSPGGSPRGYLLFRRLPPTPSPPSPAALCGEKERAPRPPPLSPPRGRASVDLQPRQRGCG RRACPASPHAGS |
Secondary structure | LLLLLLLLEEEEELLLLLLLLLLLHHHLLLLLLLLLLLLLLLLLLLLEEELLLLLLLLLL LLLLLLLLLLLL |
PRMN | - |
PiMo | - |