NONHSAT103640
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT103640 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2019 nt |
Genomic location |
chr5-:127301576..127419299 |
Exon number |
3 |
Exons |
127301576..127302620,127396836..127396936,127418427..127419299 |
Genome context |
|
Sequence |
000001 GATCCGGCCC TCCGCGGCTC CTGCGCGACC CCACGCAAAA GCGCCCCGTG CGAAGAGCGC GGCCAGCCAG TCCGCAAAGG 000080
000081 GCCTCGGGCA GTGCGGGCAG CACGAACGGC GCGATCGGGG AGCAGGCGCG GCTACGCTCC GCCTCAGTGA TGTCGCCGGG 000160 000161 AGGATCTCCG CGCGGCTACC TCCTCTTCCG CCGCCTTCCT CCCACGCCTT CACCTCCCTC CCCCGCCGCG CTCTGCGGCG 000240 000241 AAAAGGAGCG GGCTCCCAGG CCACCTCCCC TCTCTCCACC CAGGGGCCGC GCGTCAGTGG ACCTGCAGCC CAGGCAACGG 000320 000321 GGCTGCGGAC GGCGCGCGTG CCCTGCCTCG CCTCACGCCG GTAGCTGATG CTCCCGCGGC AGCTGCCACC CCAGCGCCCC 000400 000401 AGCCACGGCT TCAGAGGCTC TCGCACGCTG GCTTTTTTTT TTTCCCCCCG CTTTGGTGAA CTCGCAGTAC TTGGGCTGAG 000480 000481 CCCGAAATCT CGCGAGATGC TGCAGGCGTC AGTGCGGCTT CCCACTAGGC GCGTGGTACC CGAGGCCGGG CCGGAGCCGC 000560 000561 AGGCCAGCCG CGATTCCTTC GGGCGATGCT GGGGGCTTTC CGGTCGGGGC CGCAGCCGCT TCCGGAGCCG CGGGCGAGGT 000640 000641 GCGTTCCCCA GCCTGGTTTG CTCTGGGCTC TGACCCGCCG CCGCGAATCT CCGCTCGTAA CTCCGGGCCT GAACCTGGAG 000720 000721 GAGGGAGGAT TTCCTCTGTG CAGCTTTCGA GCGGTAGACT CACCCTGCCA GGCAGACCTA GATTGGCATA ACCAGAGATC 000800 000801 AGTTCCAGTT GTGATGCAGT GGGTGTCTAC ACACTTCTGA TGACACCTTT ATTTTAAAAG CTGATGTTCC AAGGTGCAAG 000880 000881 CGGTCTTCTC TGTCTTCTTT ATGGCCAGTA AAATTCTCCA GAAGAGATTT ATGGCAGCCT CACTCCCAGT AGTTTCTGCA 000960 000961 TTTAGTGAGA TAAGGAATGG ATTTTCTTCT GTGTATTGCT GACACGAACA GGAGACGGAA ATACTGAGTA GAAGAGGGCG 001040 001041 GTTCCCTGGC TAAGGCCCCA CCCTCAAGCC TGGATACCCG CGGCCCTAAA TGAGAAGAGG CGTTTCTGTT TGGGGCCCAA 001120 001121 AAAGTTGCTT TTTGACCCAC CACGCCCCCT ATCCTGCCCC CATATAAACC CCAAACCCCA ACCTCCAGAG CATACCAGCA 001200 001201 GGTGAGGAGA TACGAGGCAA GCCGACTGAC GGCAAAACGA CGTAGCAGAG AAAGAGAGAA GAGGAGGGAC GTCTGGACAC 001280 001281 CGAGAGATGT TTGGCTCGGG GCAGTCAGAG CGGAGTCCAG CCCCTGGGCG GCCCAACTCC AGGGGAAGAT CACCTTCCCA 001360 001361 CTTCATCCAT CCCCACCCTT CCAGCTCCCC ATCCATCCTG CTGAAAGCCA TTTCCACCAC TCAATAAAAC CTCGCATTCA 001440 001441 TCCTTCAAGT CCGTGTGTGA CCCGATTTTT CCTGGATTCT GGAAAAGAGC TCGGAATACA GAAAGCTGTC CCCTGGTCCT 001520 001521 TTGCCCTTGT GAAAAAGCAG AAGGTCCATT GAGCTGGTTA ACACTCCAGC TGTCTGTGGT GGCCAAGCTG AAAGAGCTTT 001600 001601 GTAACACTGG GGTTGCAGGC ACCCACCTCT AGACGCTACC GCAGAGCCAG AGCCCAAAGC CCTCACCCCG GCCTCTGCAC 001680 001681 TTGCCCATCT GCGTGCTCCC CCTCTCGCAA GGGGTTTCTG CAGAGGGGGC TACTGAACAG GTGAGCCACA CCCCTGTCGC 001760 001761 ACGCCCTGCA AGGGGAATCA GGGAACTCTT CCGTTTCATT GCTTTGACCA CATCCTATAA ATCTTGTTCT CCTTGTCTTT 001840 001841 CAGCTCCAAT TTGTTTATAC ATTCAGTTTT TACTTTTGAC TTTACTCATG ATTTATTATA GAAAGATGTT TAACAATTTT 001920 001921 CAAGCAAATG GAATAATTTT TGCTCCTCTT TCGTTGTTAA TTTATTATTC ATTGGAGTTA GAAAATTGTT GCTAAAATAA 002000 002001 ATTCTGCATT TTGAAATTT |
Predicted Small Protein
Name | NONHSAT103640_smProtein_149:367 |
Length | 73 |
Molecular weight | 7562.6281 |
Aromaticity | 0.0277777777778 |
Instability index | 108.920833333 |
Isoelectric point | 11.5856323242 |
Runs | 7 |
Runs residual | 0.0436942416869 |
Runs probability | 0.043568778863 |
Amino acid sequence | MSPGGSPRGYLLFRRLPPTPSPPSPAALCGEKERAPRPPPLSPPRGRASVDLQPRQRGCG RRACPASPHAGS |
Secondary structure | LLLLLLLLEEEEELLLLLLLLLLLHHHLLLLLLLLLLLLLLLLLLLLEEELLLLLLLLLL LLLLLLLLLLLL |
PRMN | - |
PiMo | - |