NONHSAT103641
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT103641 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2238 nt |
Genomic location |
chr5-:127301576..127419299 |
Exon number |
4 |
Exons |
127301576..127302620,127396836..127396936,127417665..127417883,127418427..127419299 |
Genome context |
|
Sequence |
000001 GATCCGGCCC TCCGCGGCTC CTGCGCGACC CCACGCAAAA GCGCCCCGTG CGAAGAGCGC GGCCAGCCAG TCCGCAAAGG 000080
000081 GCCTCGGGCA GTGCGGGCAG CACGAACGGC GCGATCGGGG AGCAGGCGCG GCTACGCTCC GCCTCAGTGA TGTCGCCGGG 000160 000161 AGGATCTCCG CGCGGCTACC TCCTCTTCCG CCGCCTTCCT CCCACGCCTT CACCTCCCTC CCCCGCCGCG CTCTGCGGCG 000240 000241 AAAAGGAGCG GGCTCCCAGG CCACCTCCCC TCTCTCCACC CAGGGGCCGC GCGTCAGTGG ACCTGCAGCC CAGGCAACGG 000320 000321 GGCTGCGGAC GGCGCGCGTG CCCTGCCTCG CCTCACGCCG GTAGCTGATG CTCCCGCGGC AGCTGCCACC CCAGCGCCCC 000400 000401 AGCCACGGCT TCAGAGGCTC TCGCACGCTG GCTTTTTTTT TTTCCCCCCG CTTTGGTGAA CTCGCAGTAC TTGGGCTGAG 000480 000481 CCCGAAATCT CGCGAGATGC TGCAGGCGTC AGTGCGGCTT CCCACTAGGC GCGTGGTACC CGAGGCCGGG CCGGAGCCGC 000560 000561 AGGCCAGCCG CGATTCCTTC GGGCGATGCT GGGGGCTTTC CGGTCGGGGC CGCAGCCGCT TCCGGAGCCG CGGGCGAGGT 000640 000641 GCGTTCCCCA GCCTGGTTTG CTCTGGGCTC TGACCCGCCG CCGCGAATCT CCGCTCGTAA CTCCGGGCCT GAACCTGGAG 000720 000721 GAGGGAGGAT TTCCTCTGTG CAGCTTTCGA GCGGTAGACT CACCCTGCCA GGCAGACCTA GATTGGCATA ACCAGAGATC 000800 000801 AGTTCCAGTT GTGATGCAGT GGGTGTCTAC ACACTTCTGA TGACACCTTT ATTTTAAAAG CTGATGTTCC AAGAGTCGGG 000880 000881 GTTTCACCGT GTTAGCCAGG ATGGTCTCGA TCTCCTGACC TCGTGATCCG CCCACCTCCG CCTCTCCAAG TGCTGGGATT 000960 000961 ACAGGCATGA GCCACCGCGC CCGGCCCTTG TATTTTTAAA CTTTGACTTT ATGGAGACGA ACACCATCGT TTGCTGAACA 001040 001041 CTTGAAACAT GATGAAAGAG CCACAGAGTT GGCAGAACTG TTTGAAAATG CTGTGCAAGC GGTCTTCTCT GTCTTCTTTA 001120 001121 TGGCCAGTAA AATTCTCCAG AAGAGATTTA TGGCAGCCTC ACTCCCAGTA GTTTCTGCAT TTAGTGAGAT AAGGAATGGA 001200 001201 TTTTCTTCTG TGTATTGCTG ACACGAACAG GAGACGGAAA TACTGAGTAG AAGAGGGCGG TTCCCTGGCT AAGGCCCCAC 001280 001281 CCTCAAGCCT GGATACCCGC GGCCCTAAAT GAGAAGAGGC GTTTCTGTTT GGGGCCCAAA AAGTTGCTTT TTGACCCACC 001360 001361 ACGCCCCCTA TCCTGCCCCC ATATAAACCC CAAACCCCAA CCTCCAGAGC ATACCAGCAG GTGAGGAGAT ACGAGGCAAG 001440 001441 CCGACTGACG GCAAAACGAC GTAGCAGAGA AAGAGAGAAG AGGAGGGACG TCTGGACACC GAGAGATGTT TGGCTCGGGG 001520 001521 CAGTCAGAGC GGAGTCCAGC CCCTGGGCGG CCCAACTCCA GGGGAAGATC ACCTTCCCAC TTCATCCATC CCCACCCTTC 001600 001601 CAGCTCCCCA TCCATCCTGC TGAAAGCCAT TTCCACCACT CAATAAAACC TCGCATTCAT CCTTCAAGTC CGTGTGTGAC 001680 001681 CCGATTTTTC CTGGATTCTG GAAAAGAGCT CGGAATACAG AAAGCTGTCC CCTGGTCCTT TGCCCTTGTG AAAAAGCAGA 001760 001761 AGGTCCATTG AGCTGGTTAA CACTCCAGCT GTCTGTGGTG GCCAAGCTGA AAGAGCTTTG TAACACTGGG GTTGCAGGCA 001840 001841 CCCACCTCTA GACGCTACCG CAGAGCCAGA GCCCAAAGCC CTCACCCCGG CCTCTGCACT TGCCCATCTG CGTGCTCCCC 001920 001921 CTCTCGCAAG GGGTTTCTGC AGAGGGGGCT ACTGAACAGG TGAGCCACAC CCCTGTCGCA CGCCCTGCAA GGGGAATCAG 002000 002001 GGAACTCTTC CGTTTCATTG CTTTGACCAC ATCCTATAAA TCTTGTTCTC CTTGTCTTTC AGCTCCAATT TGTTTATACA 002080 002081 TTCAGTTTTT ACTTTTGACT TTACTCATGA TTTATTATAG AAAGATGTTT AACAATTTTC AAGCAAATGG AATAATTTTT 002160 002161 GCTCCTCTTT CGTTGTTAAT TTATTATTCA TTGGAGTTAG AAAATTGTTG CTAAAATAAA TTCTGCATTT TGAAATTT |
Predicted Small Protein
Name | NONHSAT103641_smProtein_149:367 |
Length | 73 |
Molecular weight | 7562.6281 |
Aromaticity | 0.0277777777778 |
Instability index | 108.920833333 |
Isoelectric point | 11.5856323242 |
Runs | 7 |
Runs residual | 0.0436942416869 |
Runs probability | 0.043568778863 |
Amino acid sequence | MSPGGSPRGYLLFRRLPPTPSPPSPAALCGEKERAPRPPPLSPPRGRASVDLQPRQRGCG RRACPASPHAGS |
Secondary structure | LLLLLLLLEEEEELLLLLLLLLLLHHHLLLLLLLLLLLLLLLLLLLLEEELLLLLLLLLL LLLLLLLLLLLL |
PRMN | - |
PiMo | - |