NONHSAT103643

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT103643

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1113 nt

Genomic location

chr5-:127301710..127412739

Exon number

3

Exons

127301710..127302620,127396836..127396936,127412639..127412739

Genome context

Sequence
000001 GGAAGATGGA ACAAGCCCAG ACAAAGGAGG ATTCTTTTTT ACTCATCTTA AATCCATTTT ATTTTCCTTC ATCTGAGCCC 000080
000081 CTTAAAACTA ATGTGTTACT Ggtgcaagcg gtcttctctg tcttctttat ggccagtaaa attctccaga agagatttat 000160
000161 ggcagcctca ctcccagtag tttctgcatt tagtgagata aggaatggat tttcttctgt gtattgctga cacgaacagg 000240
000241 agacggaaat actgagtaga agagggcggt tccctggcta aggccccacc ctcaagcctg gatacccgcg gccctaaatg 000320
000321 agaagaggcg tttctgtttg gggcccaaaa agttgctttt tgacccacca cgccccctat cctgccccca tataaacccc 000400
000401 aaaccccaac ctccagagca taccagcagg tgaggagata cgaggcaagc cgactgacgg caaaacgacg tagcagagaa 000480
000481 agagagaaga ggagggacgt ctggacaccg agagatgttt ggctcggggc agtcagagcg gagtccagcc cctgggcggc 000560
000561 ccaactccag gggaagatca ccttcccact tcatccatcc ccacccttcc agctccccat ccatcctgct gaaagccatt 000640
000641 tccaccactc aataaaacct cgcattcatc cttcaagtcc gtgtgtgacc cgatttttcc tggattctgg aaaagagctc 000720
000721 ggaatacaga aagctgtccc ctggtccttt gcccttgtga aaaagcagaa ggtccattga gctggttaac actccagctg 000800
000801 tctgtggtgg ccaagctgaa agagctttgt aacactgggg ttgcaggcac ccacctctag acgctaccgc agagccagag 000880
000881 cccaaagccc tcaccccggc ctctgcactt gcccatctgc gtgctccccc tctcgcaagg ggtttctgca gagggggcta 000960
000961 ctgaacaggt gagccacacc cctgtcgcac gccctgcaag gggaatcagg gaactcttcc gtttcattgc tttgaccaca 001040
001041 tcctataaat cttgttctcc ttgtctttca gctccaattt gtttatacat tcagttttta cttttgactt tac
[back to top]

Predicted Small Protein

Name NONHSAT103643_smProtein_5:229
Length 75
Molecular weight 8360.6963
Aromaticity 0.148648648649
Instability index 61.9622972973
Isoelectric point 7.88470458984
Runs 8
Runs residual 0.0345418589321
Runs probability 0.0437091503269
Amino acid sequence MEQAQTKEDSFLLILNPFYFPSSEPLKTNVLLVQAVFSVFFMASKILQKRFMAASLPVVS
AFSEIRNGFSSVYC
Secondary structure LLLLLLLLLLEEEEELLLLLLLLLLLLLLEEHHHHHHHHHHHHHHHHHHHHHHHLLLLHH
HHHHHHLLLLLLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHH
HHHHHHHHHLLLLL
PiMo oooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiTTTTTTTTT
TTTTTTTTTooooo