NONHSAT103643
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT103643 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1113 nt |
Genomic location |
chr5-:127301710..127412739 |
Exon number |
3 |
Exons |
127301710..127302620,127396836..127396936,127412639..127412739 |
Genome context |
|
Sequence |
000001 GGAAGATGGA ACAAGCCCAG ACAAAGGAGG ATTCTTTTTT ACTCATCTTA AATCCATTTT ATTTTCCTTC ATCTGAGCCC 000080
000081 CTTAAAACTA ATGTGTTACT Ggtgcaagcg gtcttctctg tcttctttat ggccagtaaa attctccaga agagatttat 000160 000161 ggcagcctca ctcccagtag tttctgcatt tagtgagata aggaatggat tttcttctgt gtattgctga cacgaacagg 000240 000241 agacggaaat actgagtaga agagggcggt tccctggcta aggccccacc ctcaagcctg gatacccgcg gccctaaatg 000320 000321 agaagaggcg tttctgtttg gggcccaaaa agttgctttt tgacccacca cgccccctat cctgccccca tataaacccc 000400 000401 aaaccccaac ctccagagca taccagcagg tgaggagata cgaggcaagc cgactgacgg caaaacgacg tagcagagaa 000480 000481 agagagaaga ggagggacgt ctggacaccg agagatgttt ggctcggggc agtcagagcg gagtccagcc cctgggcggc 000560 000561 ccaactccag gggaagatca ccttcccact tcatccatcc ccacccttcc agctccccat ccatcctgct gaaagccatt 000640 000641 tccaccactc aataaaacct cgcattcatc cttcaagtcc gtgtgtgacc cgatttttcc tggattctgg aaaagagctc 000720 000721 ggaatacaga aagctgtccc ctggtccttt gcccttgtga aaaagcagaa ggtccattga gctggttaac actccagctg 000800 000801 tctgtggtgg ccaagctgaa agagctttgt aacactgggg ttgcaggcac ccacctctag acgctaccgc agagccagag 000880 000881 cccaaagccc tcaccccggc ctctgcactt gcccatctgc gtgctccccc tctcgcaagg ggtttctgca gagggggcta 000960 000961 ctgaacaggt gagccacacc cctgtcgcac gccctgcaag gggaatcagg gaactcttcc gtttcattgc tttgaccaca 001040 001041 tcctataaat cttgttctcc ttgtctttca gctccaattt gtttatacat tcagttttta cttttgactt tac |
Predicted Small Protein
Name | NONHSAT103643_smProtein_5:229 |
Length | 75 |
Molecular weight | 8360.6963 |
Aromaticity | 0.148648648649 |
Instability index | 61.9622972973 |
Isoelectric point | 7.88470458984 |
Runs | 8 |
Runs residual | 0.0345418589321 |
Runs probability | 0.0437091503269 |
Amino acid sequence | MEQAQTKEDSFLLILNPFYFPSSEPLKTNVLLVQAVFSVFFMASKILQKRFMAASLPVVS AFSEIRNGFSSVYC |
Secondary structure | LLLLLLLLLLEEEEELLLLLLLLLLLLLLEEHHHHHHHHHHHHHHHHHHHHHHHLLLLHH HHHHHHLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLHHHHHHHHH HHHHHHHHHLLLLL |
PiMo | oooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTiiiiTTTTTTTTT TTTTTTTTTooooo |