NONHSAT103857

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT103857

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

6089 nt

Genomic location

chr5+:133772208..133778296

Exon number

1

Exons

133772208..133778296

Genome context

Sequence
000001 AAAACCCTGC AGCCACCTAA AGCATGCCCT GAGTCTCTCA GCCAGGTTTC ATCTGGGAAA TCTGAGTGAC AGTGACGTGC 000080
000081 AGGCAGCTGG AAGACGCACA GTAAACCGAG GAGCCTGTGA TGAGCTCAGA GGAGGTGAGT TGATGATCTG CTATTTATAG 000160
000161 CCCCACTAAG AGGCTCTGGC CGCCAGCTCC ATGTGAGTCT GGGTGGAAAT GATGCCTTCG CAGAGCTGAG AGCACAAAAT 000240
000241 GAAGTTGGTG ATTCATGGGC AGCAGCCACT TGAAAATATG AACACTCCTG CGTCCCCAGC CCCGCCGGCC TTTCACACCC 000320
000321 ATTTGGAGGC GTGTTGAGCA GAGCTGCTAG CCTGCTGCAT CCTAGTCTGC ATGTGTTTGG GCAGGATGTG AGGACAGGCC 000400
000401 GGTTCTACCC TGACAAGGAG CCTGCAAAGG GCAGCAGCAC GCCTGGGAGC ACTCCAAGAA CGTCTGCCCA CCCCCCGAGA 000480
000481 GGCCTCGGCT GGAACCCAGG GCAGGGCTGA GTAAGAGGTA AGCCCCGAGA GGACCTGCGG TCACAGAGAA AGGACACTTC 000560
000561 CTGCTCCTGC CCTCTGTCTC CAGGGGCGAC GCTGGCAACA GAGCAGCTTT CTGATGACGC TTGTTCTGCT GAACATACAA 000640
000641 AAATTTACAA TGAGGAAACC CTTGCAGCTT GACATTTCCC CCCGCACAAT TCCACAGCCC AGCACCTGTC ACCTGAAATA 000720
000721 GCTATTGTTT ATTTTCCTCA GTAACATCTT GGCTTCCAGG CCAAAGTCTA CTTGGAGGCC CAAACTCAAC TCACCCTATG 000800
000801 TGAGGAATGC CCTGGAGGTC TCTCAGTTTC CCACAACCAA ACTGGATTTA AAGGGCCAAA CCAGGATAAG GAGGCCAGCT 000880
000881 gagctctgaa gccagattgt ctgggttcag attctttctc tacacttgca gccacgtggc ttcagtcaaa ttgccctctg 000960
000961 agactcagtt tttctcattg gtaaaatgag gataattaca gaacctacct cactgggttg cggtgaaggg tgacatttga 001040
001041 gtagtggtca gcccagcatc cagcacatgg ACAGACTTGA TACTGGACAC TGCTGCTGCT GCTTTTGCTG TTGAAGTTGT 001120
001121 TTTCACTCCT GGGTTTTGGT CCCTGTACTG ATAGCACTCC TTTGCACACA GTCTATGGCA CTGAGGTTCC TTGTGGAGGT 001200
001201 GGTGCCCTGA GGCTTCAATA GAGACCCTCT GCCCATCACA AACAAACCCC ATATCAGGCT GCCAAGCATA GTGGACTTCA 001280
001281 CCCCGGGGGC ATCTCAGCCC CATGCTTGAC CGGCCCCTGC CTTTGCCTAG GAACCAAGTG CCTTTCCCTT GGGGCTGGGC 001360
001361 TTTGCCCGGG TTGACTACCC TGATGCTTCT GCTCCTCTAT GTCCTGGGGT GGTCTTGGGG GTATTAACTG TCACCATCCA 001440
001441 GTGGAGGGTT TCACCGAGGG TCCCAGGTGC TAACATGAGG TCTGTGGCCA GCAGGCAGCC TGGATGACTG GCCGGATAGG 001520
001521 CAGCAGGGAG GGCCTGGATG ACTGGCCGGA TAGGCCCACC TCACCTATGG GCTGCACTTG CAGCACAAAC TGCTGATTCA 001600
001601 TGGAGACTCA TGAGGCCTTG GCTATCTGTA CATTCTCCAT CTCCAGCTGT CGGCCAAAAT ATAATTGTAG TTGTCACTTT 001680
001681 GGCAGAGAGA TACTATGATG TGTCCTATCT CCAAGGCAGT GAGCTTTTGG AAGATAGGAG GGATCTGCAG CTGCTCCTGT 001760
001761 GGAGAGAACC ATTCTGGAAA GTGGTCTGTG TGAAGTGCAC CCAGGTGCAG TCCCAGGAGT GGTGTGAGCA GCAGGGTGAG 001840
001841 GCCCTATATT AGAATGGGCA CTGGTGTTGC CTGTGTCTGC ATCTACAGTA ATGCAATTCT GATGACATCA ATGAATAACA 001920
001921 GAGAGGCTGC CATTGAAATG AGGCATTGTT GGCAGCTATG CGGACTTGGA AAACAGCCAC CAGGCTTATG CACAAGTCAG 002000
002001 AATCCATCGT GTGTGGGGTA AATGAGTGGT TAGACCATGG GGTACATGGT GTAAGGGAGA TGATGCCAGA GACATAGCTA 002080
002081 GGACCAGACT GAGAAGCAAG GGACTCGAAG ACCAGGCCAT GCAGCTTGGA CTTGATCCTG GACATAGGGA AAGTGATGTG 002160
002161 ATTAGAGGAT GTGGGGGTTC TGGGCTCAAG CATCCTCGAA GGGTCGCACT AAGGGCAAGG CTCCCCCTCC CCACGGCAGT 002240
002241 TGGCAAGCAG CGGCTTGCTG TTTGAGAAGG TGTTTACTCC TCTGGAGCAT GAGTCCCACA CTCAGAAGGT GCTGAGACTC 002320
002321 TGCTCGTAGG GTAAGCATAT GAAGGGCCGG TCCCAGCCAG GACAGCTGGG AGTGCGCAGT CAGCAAGGCA AAGCACCAGG 002400
002401 CTTATGTCTT CCCTCTTCTT CCATCCTTCT TGGCCAGGAG TTTATTATTG AAGCACCTGT GTGCAGATGT GCTAAATGTA 002480
002481 GATGACTGCA CCACTCAGGT CAAAGGTCAG GGAGGCTCCT GGGACTGAGA GATGACCCCG CTGCCTGTGG ATGTGGCCTC 002560
002561 CCTCCCCACT AAGGAAACAG CAGAGGCAAA CATCCAAGCT TGCCTGATGG AGGAATTCCT AGAAGAAAGG TTCTATCCTT 002640
002641 ATGTACTTAA ATACTGATTT AGAGGTTGGT TAATGGAGAC AGAAGAATAC TAAGTGTTGG GAGCCGTTAC CAGTGGAGGA 002720
002721 CCCACCCATG AGCACGGAAG CCAGAGCATA TCTGGACCAT CATGTAAGTC CGGAGGAAGA CACGATTCAG TTGACAAAAA 002800
002801 TTTGTGTACC CTCCTCAGAA GTGCATTGTT GTGCAAGAAA TGGTTTGGCA GTGACTCTCC CCTTTCAGCT GCAAGCCATC 002880
002881 AAGGGCTGAA TGCCTCTCCA GTTGCCAGAG GAGGAGTGGC TTGTAGAGCG GATGTTCCCA GTCTGGCAGA ATCTTCTGTC 002960
002961 AAGTGTTCCC TGAGTTGGGC TGCCAGGGGG CAGGTGTTGA ACAGTGAGGA AGTCCTCTCA CCTGAGCAGC TTCTGATGCA 003040
003041 AGAGGGGTGT CGTGAGTGCC TGGAATCCTA TGCCTGTGGG TGGAGCGTGA ACTTAGCCTC TTCCCTGAGG GTAGGCAGCA 003120
003121 TGTCATAACC ACTTCTGGCT GCCCATGGCT GGTTTGGGGC AATATGCCAA GATGTAGTTT TGCCTATTTG GTTTGCTTTT 003200
003201 TCCTTTAAAA TGTACAAAAG TTAATAACAT GTAATGGGtt tttaaaaaat tataaaatat GAGATACAAT CAGAAAAGTC 003280
003281 CAAACAgacc gggtgaggtg gctcacacct gtaatcccag cactttggga ggccgaggga gtggatcacc tgaggtcagg 003360
003361 agttttagac cagcctggca aacatggtga agccccatct ctactaaaaa tacaaaaatt agctgggcgt ggtggtgtgc 003440
003441 tttgcctgta gtcccagcta ctcaggaggc tgaggcagga gaattgcttg aacctgggag gctaaggttg cagtgagcca 003520
003521 agactgtgcc actgcactgc actccagcct gggtgataga gcaagactct atctcaaaaa aaaaaaaaaa gaaaaaaaag 003600
003601 aaagaaaaga aaaGTCCAAA CAACTATACA TACAGCTTAA CAAATAATTA TAACATGAAt gcactccaga ctgggtgaca 003680
003681 aagtgagacc ctgtctcaaa aaaaaaaaaa aaaaaaaagg aaaaGGAAAA AAAGATttaa ttcatgagtg agccaataaa 003760
003761 atattacaac caattcaaag gagaactcaa agtatcacaa ataatagtca gatgaagaaa gttgatttta gaaatggatg 003840
003841 caaaactggt caatatccat gaggcagtag tcagttgcaa ttcagacaca atttgcattt ctgtgaacag gaattatttg 003920
003921 cattggtatg acgtttctac aatttaattt ctatcttgag agggttgaga aatagtctag tcaaagacaa caaaagccag 004000
004001 agataacctg gaTGAATAAG TTATTCAGGA CACCCCCCAA GTTTCAACAT CATTCACAGT TTCTTCTTAC ACTTGTAATT 004080
004081 GGTTCCCTAC CTACCTCCCT CCTAGAAATT CCCCTCTGCA CGTTCCTACT GCCCTGTTTG AACCAGCTGA CCCCACCCTT 004160
004161 CCTCCCATGT TATGGTGATG GGCCAGGGCT GAAAGCCTAA CCTGGGGGAA CGTACTTATC ACCTAAGCTG AGCCAAACAA 004240
004241 GTGCTCCCAA GGCTTGGACA CTGCTTCTAC AGGGGTGGGC ACTGACATTG TCAGACTCGG GCAGGCAGAC TCAGGCAGGC 004320
004321 ACACCCAGGG CTGGTAGTCA TAATGGGCCT TGTAAAAGAT AACCAAGCAT TTTCTGTAAA GGGTAACAGA TTAGGAATAC 004400
004401 AAAGAGAAAA AACTGTAGTC CAGTGAGAAA GACAGAGTAC CTGTCCAATG AGCTTGCAGT GCCTGGGATG ACTTCCTGCA 004480
004481 TTTGGGTTCC ATTAGAGTCC CCCTTTATGC CTGAATCAGT TTGGGTGGGT GTCTGTTCCA CTAATTGCCT ATCTGAAAGA 004560
004561 ATAGCTGACG TACAAGATGT ATGATGACCT GCAGGGCTGA GGTCTTTTTC Tttttctttc tttctttttt cttttttttt 004640
004641 tgagagagtc tcactctgtt gctcaggctg gagtgcagtg gcaccatctt gctcactgca gcctctgcct cctgagttca 004720
004721 agcaattctc ccacctcagc ctcccaagta gctgggatta caggggcccg ccactactcc cggctaattt ttttttttgt 004800
004801 atttttagta aagatggggt ttcaccatgt tggccaggct ggtctccaac tcctgacctc aggtgatcca cccaccttgg 004880
004881 cctcccaaag tgctgggatt acaggtatga gccaccaggc ctggccAAAA GTCTGGTGTT TCTTgagagt caggggaggg 004960
004961 gttagttgaa gggggcaatg tggccaatta cttggggtcc tgggggcctc agagggaagt cggtgcttca cttgaagagt 005040
005041 atggggttta agaaagtgag tgctgtggtc agatctgtac tttggaacaa tcactctggc tgctggtgga gaacaggtgg 005120
005121 gagggataat ggacaggagg cataaagacc cctcaggagg cagccacagg catccaagcc agaagcgatc acctgaacag 005200
005201 aggaaagggg tggaaggaac cgactcaaga aatgttgggc cagaatttca cctgaaaaac aagacaaaga gaacccttag 005280
005281 gttttcagtc aggaccacca tgtggttaga gtgtcaccat cataggagaa agaaaccata actagcgggt gggctgggag 005360
005361 atgacgagct cagtttaaga cttggtgagt gtgaaagagc tataggcatc taggaggaag catctggcag gcaggtggat 005440
005441 acacaggtct gaaatggagg gagggtttgg cctgcaaggc tggagaGAGG AGGCTGGAGT GAATGTGCCA TGAACAAGTT 005520
005521 TACATGAATG TGACTGGGGA GCAGGGAAGA GGGGGAAAGT GCAGGAACGT AATGCCTCTT GACCCTAAAA TTCTCACTTG 005600
005601 CTGAGAGTAA GGGTGAGGGG AGGGGCTGGG GGCAGGAAGG GGGAGTTTAG AACATTTATT ATGGGAAACA GGAGAGAAGC 005680
005681 TGACCCAGGC ACAGCTATGA CATCTAAGAG GAgtcaggag actagttctt gccaaaggaa tgttgattga ggatgacatg 005760
005761 tcacttccag cccaagagag ttaagaagaa gacgtgactt ctccactctt cctttcccct tctcccagtt cgatgcccct 005840
005841 ttgttacaga ctgaatgttt gtgtcccccc aaaaattcct atgttgaaac ggaatcccca gtgtgatgat ttggaggtgg 005920
005921 agcctttggg aggtgattag gtcttaaggg tggcgccctt aggatgggat tagtgcctgt ataataagag gccagcggcc 006000
006001 aggcatggtg gctcaagcct gtaatcccag cactttgaga ggctgaggtg gctgggtcac ttgaggtcag gagtttaaga 006080
006081 tcagcctgg
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Predicted Small Protein

Name NONHSAT103857_smProtein_1853:2020
Length 56
Molecular weight 5846.8309
Aromaticity 0.0363636363636
Instability index 55.9309090909
Isoelectric point 7.58734130859
Runs 7
Runs residual 0.0242424242424
Runs probability 0.01716001716
Amino acid sequence MGTGVACVCIYSNAILMTSMNNREAAIEMRHCWQLCGLGKQPPGLCTSQNPSCVG
Secondary structure LLLEEEEEEEELLLEEEELLLHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLL
PRMN -
PiMo -