NONHSAT103879

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT103879

Source

NONCODE4.0

Same with

,

Classification

sense

Length

2020 nt

Genomic location

chr5+:134227868..134235589

Exon number

3

Exons

134227868..134229345,134231984..134232114,134235179..134235589

Genome context

Sequence
000001 ccattgatct ttgatgttac tatgttgtag cttctctatc agcacttgct gcctcacctt gcacttttat gttctggaga 000080
000081 cagcttcttt cttaaacctc atgagccaac cccagctaat ttcagacttt tcctctgcag tttcctcacc tctctcagcc 000160
000161 ttcgtagaat tgaagagagt tagggccttg ctctggattt aggctttggc ttaaatgttg tgactggttt gatcgtctat 000240
000241 ctatagcatt aagattttct ccatatgagc aataatgctg ttttgctttc ttatcatttg catattcatt gagtagcact 000320
000321 tatttttatt tttaagcatc agaggtcacc acactggatg gagtagcaca ttaacttcct ttaaaaactt ttcctttgca 000400
000401 tttataatgt ggctgtttgg tgtaagaggc ctagctttca gcctgtctcc tatgttggca ttcggcatgg cttcctcact 000480
000481 aagtttaatc aatcattttt ggctttgatt taaaatgaga gatgtacaac tcttcctttc acgagagatg tacaactctt 000560
000561 cctttcactt aaacagaggc cactgtaggg ttattaattc acctaatttc aatattgttg tgtctcaggg agaggcctga 000640
000641 ggagagggag agagatgggg aatagctggt cggtggaaca gtcagaacat agacatttac tgataaagtt cactgtcttc 000720
000721 tatgggtaca gttggtggcg ccccaaaaca attacaatag taacatcaaa gatacttatc atagatcacc ataacagata 000800
000801 taataataat ggaagagttt gaaatattgc aagaattacc aaaatgtgac acagacacaa attgagcaca tgctgttgga 000880
000881 aaaatggtgc tgaaaaactt gctggatgcc gagttgccac aaactttcaa tctgcaaaaa atgcaatgtc agcaaagtgc 000960
000961 aatggagtga aatgcagtaa aatgaggtat gcctgTATTT GAAATGATGA ATTATGAAAA ATATTAAAAT AACTTGTAAT 001040
001041 ATTAGGAAAG CGCAGAGGAA AGTTTAAAAC TTTCTGCTTA ATTCAGCAAG ACTTAAAAAA AGTGAAAGTT TATAACTTGT 001120
001121 CATTTGATCA TACTTTTTTG CTGGTTCCTG GATTCATATG GTTCAAAATC CAAAAGGTTC CGAGGGTTCC TTCTCTCGCT 001200
001201 GCTCCTACCC ACCCGTTCCT CTCCCTGGAG CAGCAGTGTG TCCTGTTTCT TGGGTATCCT TTCAGAAAAA TGTACTTTTA 001280
001281 CTGCTAACTT TAATGCTTGT TTCTTTTACC ACAGGACCTT ATGGATTTTC TGAACCCAAA CGGTAGTGAC TGTACTCTAG 001360
001361 TCCTGTTTTA CACCCCGTGG TGCCGCTTTT CTGCCAGTTT GGCCCCTCAC TTTAACTCTC TGCCCCGGGC ATTTCCAGCT 001440
001441 CTTCACTTTT TGGCACTGGA TGCATCTCAG CACAGCAGCC TTTCTACCAG GTTTGGCACC GTAGCTGTTC CTAATATTTT 001520
001521 ATTATTTCAA GGAGCTAAAC CAATGGCCAG ATTTAATCAT ACAGATCGAA CACTGGAAAC ACTGAAAATC TTCATTTTTA 001600
001601 ATCAGACAGG TATAGAAGCC AAGAAGAATG TGGTGGTAAC TCAAGCCGAC CAAATAGGCC CTCTTCCCAG CACTTTGATA 001680
001681 AAAAGTGTGG ACTGGTTGCT TGTATTTTCC TTATTCTTTT TAATTAGTTT TATTATGTAT GCTACCATTC GAACTGAGAG 001760
001761 TATTCGGTGG CTAATTCCAG GACAAGAGCA GGAACATGTG GAGTAGTGAT GGTCTGAAAG AAGTTGGAAA GAGGAACTTC 001840
001841 AATCCTTCGT TTCAGAAATT AGTGCTACAG TTTCATACAT TTTCTCCAGT GACGTGTTGA CTTGAAACTT CAGGCAGATT 001920
001921 AAAAGAATCA TTTGTTGAAC AACTGAATGT ATAAAAAAAT TATAAACTGG TGTTTTAACT AGTATTGCAA TAAGCAAATG 002000
002001 CAAAAATATT CAATAGATGC
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Predicted Small Protein

Name NONHSAT103879_smProtein_1157:1345
Length 63
Molecular weight 6717.8087
Aromaticity 0.112903225806
Instability index 40.8403225806
Isoelectric point 9.23712158203
Runs 4
Runs residual 0.0891244239631
Runs probability 0.0580727786609
Amino acid sequence MVQNPKGSEGSFSRCSYPPVPLPGAAVCPVSWVSFQKNVLLLLTLMLVSFTTGPYGFSEP
KR
Secondary structure LLLLLLLLLLLLLLLLLLLLLLLLLEEEEEEEEEHHHHHHHHHHHHHHHHLLLLLLLLLL
LL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLL
LL
PiMo oooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTiiiiiiiiiiii
ii