NONHSAT103879
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT103879 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2020 nt |
Genomic location |
chr5+:134227868..134235589 |
Exon number |
3 |
Exons |
134227868..134229345,134231984..134232114,134235179..134235589 |
Genome context |
|
Sequence |
000001 ccattgatct ttgatgttac tatgttgtag cttctctatc agcacttgct gcctcacctt gcacttttat gttctggaga 000080
000081 cagcttcttt cttaaacctc atgagccaac cccagctaat ttcagacttt tcctctgcag tttcctcacc tctctcagcc 000160 000161 ttcgtagaat tgaagagagt tagggccttg ctctggattt aggctttggc ttaaatgttg tgactggttt gatcgtctat 000240 000241 ctatagcatt aagattttct ccatatgagc aataatgctg ttttgctttc ttatcatttg catattcatt gagtagcact 000320 000321 tatttttatt tttaagcatc agaggtcacc acactggatg gagtagcaca ttaacttcct ttaaaaactt ttcctttgca 000400 000401 tttataatgt ggctgtttgg tgtaagaggc ctagctttca gcctgtctcc tatgttggca ttcggcatgg cttcctcact 000480 000481 aagtttaatc aatcattttt ggctttgatt taaaatgaga gatgtacaac tcttcctttc acgagagatg tacaactctt 000560 000561 cctttcactt aaacagaggc cactgtaggg ttattaattc acctaatttc aatattgttg tgtctcaggg agaggcctga 000640 000641 ggagagggag agagatgggg aatagctggt cggtggaaca gtcagaacat agacatttac tgataaagtt cactgtcttc 000720 000721 tatgggtaca gttggtggcg ccccaaaaca attacaatag taacatcaaa gatacttatc atagatcacc ataacagata 000800 000801 taataataat ggaagagttt gaaatattgc aagaattacc aaaatgtgac acagacacaa attgagcaca tgctgttgga 000880 000881 aaaatggtgc tgaaaaactt gctggatgcc gagttgccac aaactttcaa tctgcaaaaa atgcaatgtc agcaaagtgc 000960 000961 aatggagtga aatgcagtaa aatgaggtat gcctgTATTT GAAATGATGA ATTATGAAAA ATATTAAAAT AACTTGTAAT 001040 001041 ATTAGGAAAG CGCAGAGGAA AGTTTAAAAC TTTCTGCTTA ATTCAGCAAG ACTTAAAAAA AGTGAAAGTT TATAACTTGT 001120 001121 CATTTGATCA TACTTTTTTG CTGGTTCCTG GATTCATATG GTTCAAAATC CAAAAGGTTC CGAGGGTTCC TTCTCTCGCT 001200 001201 GCTCCTACCC ACCCGTTCCT CTCCCTGGAG CAGCAGTGTG TCCTGTTTCT TGGGTATCCT TTCAGAAAAA TGTACTTTTA 001280 001281 CTGCTAACTT TAATGCTTGT TTCTTTTACC ACAGGACCTT ATGGATTTTC TGAACCCAAA CGGTAGTGAC TGTACTCTAG 001360 001361 TCCTGTTTTA CACCCCGTGG TGCCGCTTTT CTGCCAGTTT GGCCCCTCAC TTTAACTCTC TGCCCCGGGC ATTTCCAGCT 001440 001441 CTTCACTTTT TGGCACTGGA TGCATCTCAG CACAGCAGCC TTTCTACCAG GTTTGGCACC GTAGCTGTTC CTAATATTTT 001520 001521 ATTATTTCAA GGAGCTAAAC CAATGGCCAG ATTTAATCAT ACAGATCGAA CACTGGAAAC ACTGAAAATC TTCATTTTTA 001600 001601 ATCAGACAGG TATAGAAGCC AAGAAGAATG TGGTGGTAAC TCAAGCCGAC CAAATAGGCC CTCTTCCCAG CACTTTGATA 001680 001681 AAAAGTGTGG ACTGGTTGCT TGTATTTTCC TTATTCTTTT TAATTAGTTT TATTATGTAT GCTACCATTC GAACTGAGAG 001760 001761 TATTCGGTGG CTAATTCCAG GACAAGAGCA GGAACATGTG GAGTAGTGAT GGTCTGAAAG AAGTTGGAAA GAGGAACTTC 001840 001841 AATCCTTCGT TTCAGAAATT AGTGCTACAG TTTCATACAT TTTCTCCAGT GACGTGTTGA CTTGAAACTT CAGGCAGATT 001920 001921 AAAAGAATCA TTTGTTGAAC AACTGAATGT ATAAAAAAAT TATAAACTGG TGTTTTAACT AGTATTGCAA TAAGCAAATG 002000 002001 CAAAAATATT CAATAGATGC |
Predicted Small Protein
Name | NONHSAT103879_smProtein_1157:1345 |
Length | 63 |
Molecular weight | 6717.8087 |
Aromaticity | 0.112903225806 |
Instability index | 40.8403225806 |
Isoelectric point | 9.23712158203 |
Runs | 4 |
Runs residual | 0.0891244239631 |
Runs probability | 0.0580727786609 |
Amino acid sequence | MVQNPKGSEGSFSRCSYPPVPLPGAAVCPVSWVSFQKNVLLLLTLMLVSFTTGPYGFSEP KR |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLEEEEEEEEEHHHHHHHHHHHHHHHHLLLLLLLLLL LL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLL LL |
PiMo | oooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTiiiiiiiiiiii ii |