NONHSAT103908
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT103908 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2727 nt |
Genomic location |
chr5+:134735579..134738305 |
Exon number |
1 |
Exons |
134735579..134738305 |
Genome context |
|
Sequence |
000001 ATTCCTTATC ATCACACACG TTTTTTAAAA ACTGCGGACA GGCCGAAAGA GGAGGAGCCG CCACAAAGCC CGCCACGTCT 000080
000081 TCCTAAATTG GTTTACCGCC TGAAGGCATT GGTGCCCCAT CCCGGGTACT TAAATGGGGG CCTGCCCTCT ACTCCCCTCC 000160 000161 CTCCAAAGTG TGGAGCCGGA AGCCACTTCT CCATCCAGCT GTGAACTaaa tttggataat aatacacatc cctcagggtt 000240 000241 gatgtgaagt ttaaaGTGCC GCTACTGGGG ATTATGGAGG TAATTAGAGA CCCCCACCCC CACCCCCCAG TCCTCAGGCT 000320 000321 GCGCGGGAAT CGCAGCGGCA GTAACCTCCA CCTCACCGGG ATGCTTTACA CCTTACTTTA AGAGTTTGCA AAACAATGTC 000400 000401 CAATACCTGC Cattcatgca ttcgttaatt cgattaagta ctgagaacgt attttgtgtc atacatcgat ttgggtgctg 000480 000481 gatatgaaac agccaagaga acaggcagaa atctctgccc tcctgtagtt tgcagtctcg tgggggaaag acagacaaac 000560 000561 gggagaatgt gtcagagggt ctccatgggg tggagaaaaa taaggcggag aaggggaata ggaagtgtga gataagagtg 000640 000641 aggctcaaat acaagagaag gcctctatga gaaagtaaca tttaaagcct gaagaaattg agggagcaag ccgtgtggat 000720 000721 gtctggggaa gaactgcgcc gagcatgagg aatagcaagt gcaaaggctg gggtaggagt gtgtccaaaa tagtcaagac 000800 000801 agagcgagtg tgaggttgga gtagaatggg tgaaggggaa agtaacagga gatgaagctg gaaaaatgat gATGCTTATG 000880 000881 ATGCTTCTGG TCCCAAAACA AAGCATTATG GTTCTATGAG GATCTCCCGA AGAAAAGATG TCAGGAAAGG TGCAGAGACC 000960 000961 CTCCCCCACA CACCACATTG TTGTTCCATC CTTCTCTGTG CCTTTGGGCA AGGACTCTCC GTTCTGTAGG GACCACCAGG 001040 001041 TGGAATTAAA GTCTACACTC CTCCAAGAGC TGATCTTGGG GCGGCCCCAC CTCCATGCCC CTCTACAGCG TGCCATTCTC 001120 001121 ATAGAACACA CTAGGACCTT TGTCCTCTGG AGCTGTTCAG TGCAGCAGCT CTGACCTCAT CCTTCTCCAG AAGCCTCCAC 001200 001201 CTTCTCTCCC CTCTCTCCTC CTGCGCTTTG TGTGTCCTGT TCTTCCACTT CGGTGACCTG TCTCCTCCCC TAATCTGGCT 001280 001281 CAGAGAGGGG TACCAGCTGC TGCTGCTGCT ATTGCTTCTT CTTCTGTTAA AGGTTTTTTA TTTTTTTCCA ATGACAAAGC 001360 001361 TATGCTCATT CTGAAAACAT GAAAAATAAA AATGCTCAAA AAATAAAACT CACTCTACAT TCATTGCTAG GAGAGAACAG 001440 001441 CCTGCTCCCA TTCCAGCCTT TTTATCTATA TCCACTTAAC ATTAAACATA CAGAGTTTCT ACTCTATTTA GTGATTGTCA 001520 001521 CCTGCACTTT AAACTTAATG GTTCTTTATG AGCATTTTAC TGGGTAGTTG TTCTACAATA ACATTACTGG aactgtttgg 001600 001601 gtttcccttg accctcttaa aaattactga gaaccctgaa gagcttttgt tttataggtt acatctatca atatttgctt 001680 001681 tattagaaat aaaaactgag aaaaagtaaa tatttattaa tttattttaa aaatgttaac atggaaagaa attatattac 001760 001761 ataaataatg tattttagaa aaataattat actttccaaa caaaaataat tagtgggaag agtggcattg ttttacagtt 001840 001841 ttgcacggct cttgaatgtc tggtgtaata gaagatagct ggtttcatgc ctcctcctgc attcagtcgg tcactatatg 001920 001921 ttgttttgtt tgaagtatgt gaagaaaatt cagccttatg tagatatgta tatgggaaag aatagaggat tttaatcgcc 002000 002001 ttttcagata attacagatg ttcttttttc ataccacacc aaaatgcaag gagtcgtttc ttaaaggtta agtgcaatgt 002080 002081 agaacctgaa aaaaaaaatc aataaacttt tgaactcagt taatacatta aaatccattg gcctatttta tatcttgact 002160 002161 gggtccttta gctatgcata atttggtaaa atcatacatt gatcatttgg gaaatatcag ttcactgatt tatacggatc 002240 002241 ttacaaatgt aaacacattt cattgtacaa tattagaaaa tcacatctat taatagcacc actgatctca tctgaaggtt 002320 002321 tttgagtatt gggaagttgt caagctcttg gtggcagata cgagtttccc aaaattgtaa tttctgcttg aaagctcaag 002400 002401 tttatcactg acaacataat gtcacagtga ttttcctaga aatgacaggt tcatttcatt cattttcaag aaaatgtcta 002480 002481 ccaCAAACAA aggaccacat tatgactttc atgggccata ggcatttttg cctgcatggg ccctttcctc cactaaaaag 002560 002561 acaactgcac tggtataaag acaaataaat taatattgta tattaaaacT GTGCCTCGTG GAGTATTCAG CCCTACGTac 002640 002641 acccaattct gaatacccat agtttgtctg tcaggtgtag cttctccatt agaaacagta ctcaggcccc caggacttta 002720 002721 tgggccc |
Predicted Small Protein
Name | NONHSAT103908_smProtein_1547:1708 |
Length | 54 |
Molecular weight | 6082.2574 |
Aromaticity | 0.0943396226415 |
Instability index | 49.4643396226 |
Isoelectric point | 5.65130615234 |
Runs | 9 |
Runs residual | 0.00954901058444 |
Runs probability | 0.021600031404 |
Amino acid sequence | MSILLGSCSTITLLELFGFPLTLLKITENPEELLFYRLHLSIFALLEIKTEKK |
Secondary structure | LEEELLLHHHHHHHHHHLLLHHHHHLLLLHHHHHHHHHHHHHHHHHHHHHHLL |
PRMN | - |
PiMo | - |