NONHSAT104187
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT104187 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2230 nt |
Genomic location |
chr5-:139778780..139781009 |
Exon number |
1 |
Exons |
139778780..139781009 |
Genome context |
|
Sequence |
000001 CGGGAAAGGG CCGGGAAATT TCCACTTCTG AATAAAATGA CTGCTGAAGT GATGACCCGC AAGAATTGGT CAAATTTGGA 000080
000081 GTAGACTTCA CCCTGCGCTT GGTGAAACTT CTACGTCAAG GATGCAAGAG GCGCCGAAGT AACGCAGCTC CCACCTGTCG 000160 000161 CTCTCCGCTG GGCGCCGAGA CTATGGCCGG AGAATAGCTG CACCGGGATT GGAGAAAGGA AGCCATCAGT CTTAGGAAGG 000240 000241 CTCCACCTTC CTGCCATTGC CTGGTTGGAG GAGCGTAGCG TCAGTCACTA GAGCAGTCAC CACCTCTGGG ACAGGTGAAG 000320 000321 ATGTGTAACC TATTTGCCGG GGGCTATTTG GGAGGGAATA GAGGACGGGG AGCGATGAGG GGACAGTCGA GGGGCAAGGC 000400 000401 CGATCTCGCT TCGCGCCTCC CGCCTTTCTG AGTTGAGCCT AGCGCGCGGG TCTGAGGGAC ATCCGGGGAG CTGCTTGGGA 000480 000481 TGGCCGCCTT GGGGAGACTC GACCCGCCCG CCAGGACCCG GCCGCGCGCC GCAGTTCGGG CGCCTTCGGG CAGGATCGCC 000560 000561 CAGCGGGGCC GCGTTCTCCT GCTTGCGGAC GGCTGCGGGC CTGAGGGCTG GACAGCGCCA TGCCTCAGTA CCGGGAACTG 000640 000641 TCCCACGTAG GAAGGTGGGA ATGCCGCGAA CGGCGTGCGG AATCCGACCT CAAGGTGGAA CGGGgtggtg aagagtgcat 000720 000721 gctccgaggc agtttcgagt tctggtgctg ccacttactt gctgcctgac ttcggcgcgt ttgctgtttc atttttgtga 000800 000801 ctttcaactc gctcctctgt gaaatgggag taatattagt accttcctca ttgggttgtt gttatgaata aattagatga 000880 000881 taatatagcg cttagcaaag tcccaaactt acaggaaaga ctcatttttg ctagttattg tCTCCTCTTC CTTCAGGAAC 000960 000961 TCTCTGCTCG CCCCTGGGTC CTGCCAGCCC AACTAATTCT AGTTCTAATC AGATCTGTGT GGTGCAAAAC AAGGCTAGCT 001040 001041 GTGGTGGTCT TCCCTCCTCT AAGGAGATCT CTTCCTCCCT ATATGCATCT CTCTATCTCT GTCTTTATCT TGTCAGTAAA 001120 001121 GAGGGGGGTT AAAAATATTC AGATTCTATA Gcgggcgccg tggctcacgc ctgtaatccc aacactatgg gatgttgagg 001200 001201 cgggcggatc atttgaaccc agtagttcga gcccagccta ggcaacatgg tgaaatcccg tctttaccaa aaatacaaaa 001280 001281 attgggctcg gcgcggtgac tcacgcctgt taatcccagc actttgggag gcctaggtgg gcggatcatt tgaggttagg 001360 001361 agttctagac cagcctggcc aacatggcga aaccccgtct atactaaaaa tacaaaaatt agccagatgt gatggtgcgt 001440 001441 gcctgtaatc ccagctactc gggaggctga ggcaggagaa tcacttgaac ccaggaggcg aagtttgcag tgagccaaga 001520 001521 tcgtgccact gcactccagg ttaggcgaca gagcaacaca tcgtctcaaa aaaaaaaaaa aaattagccg agcatggtgg 001600 001601 tgcatgcctg taattccagc tactcaggag gctgaggtgg gagggatccc ctgagcctgg gagatggagg ttgcagtgag 001680 001681 ccgagatcgt gccactgaac tccagcctga gcaacagagc ggtgccctgt ctaaaaaaat taaaaaaata aaaaaaaaaC 001760 001761 GGTTTCTATC TAATCCTTTA ATCAGACATG ACCAAAAAAG GAGTCTGGTG GTTTGTATGG AAAATATCCT TTGACCCAGA 001840 001841 GAATGTCCAT ATGATAACAG AATTTGGCTG AAAAAAAAAA AAATggccgg gcgcagtggc tcacacctgt aatcccagca 001920 001921 ccttgggagg cagaggtgag cggatcacga ggtcaggaga tggagaccat cctggccaac atggtgaaac cccgtctcta 002000 002001 ctaaaaatac aaaaattagc caagtgtggc ggcgcgtgcc tgtaatccca gctactcggg tggctgaggc aagagaatcg 002080 002081 cttgaaccca ggaggcggag gttgcagtga gccgagatcg caccactgca ctgcagcctg gcgacagagc aagactcagt 002160 002161 ctcaaaaaaa aaaaaaaaaa GTCATTTTCT CCTCTCTTAC AACTTTAACA AAGGCCTTTA TATATCTCAA |
Predicted Small Protein
Name | NONHSAT104187_smProtein_863:1150 |
Length | 96 |
Molecular weight | 10926.1623 |
Aromaticity | 0.0842105263158 |
Instability index | 83.7936842105 |
Isoelectric point | 10.373840332 |
Runs | 13 |
Runs residual | 0.00779113137174 |
Runs probability | 0.0716440422324 |
Amino acid sequence | MNKLDDNIALSKVPNLQERLIFASYCLLFLQELSARPWVLPAQLILVLIRSVWCKTRLAV VVFPPLRRSLPPYMHLSISVFILSVKRGVKNIQIL |
Secondary structure | LLLLLLLHHHLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLHHHHHHHHHHHHHHHLLEEE EELLLLLLLLLLLEEEEEEEEEEEEELLLLLEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHL LLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTo oooooooTTTTTTTTTTTTTTTTTTiiiiiiiiii |