NONHSAT104197
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT104197 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1802 nt |
Genomic location |
chr5-:139930119..139937031 |
Exon number |
3 |
Exons |
139930119..139930496,139930646..139931769,139936732..139937031 |
Genome context |
|
Sequence |
000001 GAGCTGTACG TGAAGCCGGG TGAGCGCAGC CGGCGGGCTA GGGCACTAGG TTGTCGCCCC GGCCTAGGCT GGGGGCGGTT 000080
000081 GCGGCGCTTA GTATGGACCC TCTGTCTCCC CCAGCCCCAG TATAAGCTAA CAGTGGAGTT CCGGGCTCGC TTCACACATC 000160 000161 CCTCGCCTCC GCAGGCAACA AGGAACGCGG CTGGAACGAC CCGCCGCAGT TCTCATACGG GCTGCAGACC CAGGCCGGCG 000240 000241 GACCCAGGCG CTCGCTGCTT ACCAAGAGGG TCGCCGCACC CCAGGATGGA TCCCCCAGAG TCCCCGCATC AGAGACTTCT 000320 000321 CCTGGGCCTC CCCCAATGGG GCCTCCACCT CCTTCAAGTA AGGCTCCCAG GTCCCCACCT GTGGGGAGTG GTCCTGCCTC 000400 000401 TGGCGTGGAG CCCACAAGTT TCCCAGTCGA GTCTGAGGCT GTGATGGAGG ATGTGCTGAG ACCTTTGGAA CAGGCATTGG 000480 000481 AAGACTGCCG TGGCCACACA AGGGTAAGCT CTGGCACATC AGAGGTTAGA GAGGGCTCCC ATCCACAGCC AAATGCAGGA 000560 000561 ATGGTTCCCA GAGATAGACC CTCTGACCCA GTGGACAggt tcttaatcct ttgagagtta cggactcctt cagaatctgc 000640 000641 taaggccttc ccaaagaaat gaacacaGGA TTTCAGGAGC ATTAATAAGA CTTTTGAAGA CCAATCAGTA GAAGATGCTG 000720 000721 TGGGAACAAG AGTTGAATTC AGCTCCTATT AGTGAACAAC CTGATTTTCT GTATCTCCAT GCCATTCAGA GCAGAAGCTG 000800 000801 CTGATTTTAT TCTCAGGAAA TTTATATTGT GCCCAGTTAG GGAGAAAGAA ACCTCTTCTA GCTATAGTGT TTTCTTAGTT 000880 000881 CTTAGAAAAA GAGATCTGAA GAATGTCTTA AAAGAAAGGG AAAGTAGCAT GGTCATTTCA CCTCTTTGGC GCTTAGTTTT 000960 000961 CTTTTTGTGA AGTAACGCTA CAGGATGAGC TTCTGAGAGT CTGAGAAGCC CCTGAAATTT TAGAATTCTA GTCATAGTAG 001040 001041 Gaggtgggtt aggaagactg gtggtgggaa gatgagagaa ttcctgttta atgacctcta cttttcaatg aaacatcagg 001120 001121 cagtgtcaga agaagacagc agggaaagga aggTTTCATC AGTTTCTCAG TGGGGCCTCT AATCTTTGGG TAAAGAACCA 001200 001201 GAATTCTAAA GTGTGGGCCA GAGAAAGCAG GTGCTTCCTA TGTGGTGCTG TCTTCCCCTC TCCTCCCCTC ATTGGGCTGG 001280 001281 CAGCACTGAA TTGGAGGGGG GCTTCTGTCT CTTAGAAGCA GGTATGTGAT GACATCAGCC GACGCCTGGC ACTGCTGCAG 001360 001361 GAACAGTGGG CTGGAGGAAA GTTGTCAATA CCTGTAAAGA AGAGAATGGC TCTACTGGTG CAAGAGCTTT CAAGCCACCG 001440 001441 GTGGGACGCA GCAGATGACA TCCACCGCTC CCTCATGGTT GACCATGTGA CTGAGGTCAG TCAGTGGATG GTAGGAGTTA 001520 001521 AAAGATTAAT TGCAGAAAAG AGGAGTCTGT TTTCAGAGGA GGCAGCCAAT GAAGAGAAAT CTGCAGCCAC AGCTGAGAAG 001600 001601 AACCATACCA TACCAGGCTT CCAGCAGGCT TCATAATCCT CGGTTCCCCA GACTCACCGG ACACCATCTC CTATGCCTTG 001680 001681 GAGACCTTCT GTCACTTGGC TCCCTTCTTA CCACCACCAA GACTGTCCCA CTGGGCCTGA CCCACCTATG AGGGAAGAAG 001760 001761 TCCCACCTGG GCCAGAGGGA GTTCATGTGT TACTCATAAC AT |
Predicted Small Protein
Name | NONHSAT104197_smProtein_335:613 |
Length | 93 |
Molecular weight | 9724.7473 |
Aromaticity | 0.0217391304348 |
Instability index | 69.247826087 |
Isoelectric point | 5.02117919922 |
Runs | 11 |
Runs residual | 0.0156396621833 |
Runs probability | 0.033386327504 |
Amino acid sequence | MGPPPPSSKAPRSPPVGSGPASGVEPTSFPVESEAVMEDVLRPLEQALEDCRGHTRVSSG TSEVREGSHPQPNAGMVPRDRPSDPVDRFLIL |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHLHHHHHHHHHLLLEEELLL LEEEEELLLLLLLLLLLLLLLLLLLLLLEEEL |
PRMN | - |
PiMo | - |