NONHSAT104270
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT104270 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense,sense |
Length |
3181 nt |
Genomic location |
chr5-:141018870..141022188 |
Exon number |
2 |
Exons |
141018870..141021130,141021269..141022188 |
Genome context |
|
Sequence |
000001 ATATGCACCT TTTGCTCCTA GTGTCCAGAT ACCTAGCTTT GTATCATTAT TTTTTCTGAT GCCCACTTTT TTTCTTTTTT 000080
000081 AAATGTCTAT AGCAGtttta ttttattatt tattttagat tcaggaggta catgtgcttg tttgtcatat ggatatattg 000160 000161 catactggtg gagattgggc ttctagtgta cctgtaactc aaatagtgaa cattgtacct gataggtaat ttttcaaccc 000240 000241 tcgcccctgc ctctactcct acctttgccc cctttggagt cctgggagtc tgttatttcc atctctatgt ccatgtgtac 000320 000321 ccgttgttta gctcccactt ataagtgaga acatgcaata tttggttttc tgtttctgag ttagttcact taggataatg 000400 000401 gcatccaact ccattcatgt tgctgcagag gacatgattt cattcttttt tatggctgtg gaatGCCTGC CTTTTCTAAA 000480 000481 ACTTTCTGGT ACTTCCACCT TGTCCACAAG GAGTCTCCCT CCCTGGAGTT ACCACCATCT CCACCACCCC AAGTTCACTT 000560 000561 TGCATGACTT AGCACTTAGT CATTTATTGT GTTTGTTGAG GTTTCATTAT TGGTTTCTTG ACAGCCATTG GGGGTGGGAG 000640 000641 CACTATGCAT CCTATCTCCC TTAGTTTTGT ACCTTGAGCA GAGCTGATTA TACAGCAGTT GCCCAATAAA TGTTGAGGAC 000720 000721 AGTGGATAGA GTGATGGATT TTATGGTCTA GGATGGTGAC cattaattta acaaatattt atagaatgcc actgtcctaa 000800 000801 gtgctggaga tacagcattg aacaaaacaa aGTCTGAAGA CTGACTTGTG GTTCTTATTT CCAGACAAAG CCCTGGACTT 000880 000881 CCCTGGGTTC CTGGACATGA TGGCACCTCG ACTCAGGCCG ATGCGTCCAC CACCTCCCCC GCCGGCTAAA GCCCCGGATC 000960 000961 CTGGCCACCC AGATCCCCTC ACCTGAAGGC CAGGGAAGCC TTGACCCCCA GTGATGCTGC TGTCCCTATC TTCAAGCTGT 001040 001041 CAGACCACAC CATCAATGAT CCAGAGCAAC ACAGCCAAAA GCTGGAATCG CCCTTATTTC CACCCTCACC TCCAAGGGTG 001120 001121 GAAACTTGCC CCTTCCCATT TCTAGAGCTG GAACCCACTC CTTTTTTTCC CATTGTTCTA TCATCTCTAG GACCGGAACT 001200 001201 ACCTTCTCTT CTGTCATGAC CCTATCTAGG GTGGTGAAAT GCCTGAAATC TCTGGGGCTG GAAACCATCC ATCAAGGTCT 001280 001281 CTAGTAGTTC TGGCCCACCT CTTTCCCCAC CCTGGCTCCA TGACCCACCC CACTCTGGAT GCCAGGGTCA CTGGGGTTGG 001360 001361 GCTGGGGAGA GGAACAGGCC TTGGGAATCA GGAGCTGGAG CCAGGATGCG AAGCAGCTGT AATGGTCTGA GCGGATTTAT 001440 001441 TGACAATGAA TAAAGGGCAC GAAGGCCAGG CCAGGGCCTG GGCCTCTTGT GCTAAGAGGG CAGGGGGCCT ACGGTGCTAT 001520 001521 TGCTTTAGGG GCCCACCACG GGCAGGGGCC TGCTCCCAGC TGCCACGCTC TATCATATGG AGCGAGGTGT TGGGGAAGGC 001600 001601 GGGGCAGGCA GCCTGTTGCA GGCAGGGGAA GGAGAAGAGA CTGAGGGGCT GTGACCTCTC CTGAGGCCCC CAGCCTGAGA 001680 001681 CTGTGCAACT CCAGGTGGAA GTAGAGCTGG TCCCTCAGCT GGGGGGCAGT GCTGTCCAGT GGAGGGGAGG GCTTTCACGC 001760 001761 CCACCCACCC CCTGGCCCTG CCAGCTGGTA GTCCATCAGC ACAATGAAGG AGACTTGGAG AAGAGGAAGA ATAACACTGT 001840 001841 TGCTTCCTGT TCAAGCTGTG TCCAGCTTTT CCCCTGGGGC TCCAGGACCT TCCCTACCTC CACCACCAAA CCAAGGGATT 001920 001921 TATAGCAAAG GCTAAGCCTG CAGTTTACTC GGGGGGTTCA GGGAGCCGAA AGGCTTAAAT AGTTTAAGTA GGTGATGGGA 002000 002001 AGATGAGATT ACCTCATTTA GGGCTCAGGC AGACTCACCT CACATACTCC CTGCTCCCTG TGGTAGAGAC ACCTGAGAGA 002080 002081 AAGGGGAGGG GTCAACAATG AGAGACCAGG AGTAGGTCCT ATCAGTGCCC CCCAGAGTAG AGAGCAATAA GAGCCCAGCC 002160 002161 CAGTGCAGTC CCGGCTGTGT TTTCCTACCT GGTGATCAGA AGTGTCTGGT TTGCTTGGCT GCCCATTTGC CTCTTGAGTG 002240 002241 GGCAGCCCTG GGCTTGGGCC CCTCCCTCCG GCCCTCAGTG TTGGCTCTGC AGAAGCTCTG GGGTTCCCTT CAAGTGCACG 002320 002321 AGGGGTTAGG CTGCTGTCCC TGAGTCCTCC ATTCTGTACT GGGGGGCTGG CTAGGACCTG GGGCTGTGGC CTCTCAGGGG 002400 002401 GCAGCCTCTC CATGGCAGGC ATCCCTGCCT TGGGCTGCCC TCCCCCAGAC CCCTGACCAC CCCCTGGGTC CTGTCCCCCA 002480 002481 CCAGAGCCCC AGCTCCTGTC TGTGGGGGAG CCATCACGGT GTTCGTGCAG TCCATAGCGC TTCTCAATGT GTGTCACCCG 002560 002561 GAACCTGGGA GGGGAGGGAA CACTGGGGTT TAGGACCACA ACTCAGAGGC TGCTTGGCCC TCCCCTCTGA CCAGGGACAT 002640 002641 CCTGAGTTTG GTGGCTACTT CCCTCTGGCC TAAGGTAGGG GAGGCCTTCT CAGATTGTGG GGCACATTGT GTAGCCTGAC 002720 002721 TTCTGCCGGA GCTCCCAGTC CAGGAGGAAA GAGCCAAGGC CCACTTTTGG GATCAGGTGC CTGATCACTG GGCCCCCTAC 002800 002801 CTCAGCCCCC CTTTCCCTGG AGCACCTGCC CCACCTGCCC ACAGAGAACA CAGTGGTCTC CCCTGTCCGG GGGCGGCTTT 002880 002881 TTCCTTCCTT GGAGCGTCCC TGACGGACAA GTGGAGGCCT CTTGCTGCGG CTGCAATGGA GGCAAGGGGC TGCAGAGCCC 002960 002961 AGGTGCACTG TGTGATGATG GGAGGGGGCT CCGTCCTGCA GGCTGGAGGT GGCATCCACA CTGGACAGCA GGGAGGAGGG 003040 003041 GAGTGAGGGT AACATTTCCA TTTCCCTTCA TGTTTTGTTT CTTACGTTCT TTCAGCATGC TCCTTAAAAC CCCAGAAGCC 003120 003121 CCAATTTCCC CAAGCCCCAT TTTTTCTTGT CTTTATCTAA TAAACTCAAT ATTAAGATGT T |
Predicted Small Protein
Name | NONHSAT104270_smProtein_1445:1663 |
Length | 73 |
Molecular weight | 7765.9576 |
Aromaticity | 0.0555555555556 |
Instability index | 56.8986111111 |
Isoelectric point | 9.91107177734 |
Runs | 8 |
Runs residual | 0.0298053527981 |
Runs probability | 0.0423732556086 |
Amino acid sequence | MNKGHEGQARAWASCAKRAGGLRCYCFRGPPRAGACSQLPRSIIWSEVLGKAGQAACCRQ GKEKRLRGCDLS |
Secondary structure | LLLLLHHHHHHHHHHHHHLLLLEEEELLLLLLLLLLLLLLLLEEEHHHHHHHHHHHHHHL LLLLLLLLLLLL |
PRMN | - |
PiMo | - |