NONHSAT104281
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT104281 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
4361 nt |
Genomic location |
chr5+:141261246..141265606 |
Exon number |
1 |
Exons |
141261246..141265606 |
Genome context |
|
Sequence |
000001 TGTGCTCAGT GCCAAAATAT CTGATCAAAA AATAACCAAA ATAAGCAAAC ACCAAGACGA CTGTTCTGGG GACTATGGTC 000080
000081 AGGGAGAGCC GATGGCTCAG ATCCAGGAAA CCCTAGGCTC CAGGGTACCT GTTTCACTAC CCCTCTCCCC CAGGGAAGCT 000160 000161 TTGCTGAACG TTCTGATAAC CTAGAAGGCC CCTTTCCAAG GAATCCCCCA CAGCACAATC TCCCAGGACT CTGAGATTTC 000240 000241 CAATAGTTCC TGTCCAAGGG GCAGCTTTGC CTGAGGTGGG AGCATCGGGA GAGGGTGAGG GCTGGGGATC ACTTCCCAGG 000320 000321 AGCTGGCAGA TGAAGCTTCT AAGAAGCTCC CTCCCTGCCC TAGCCACAAG CATCCGCACT CACTCATTCA CCCACCCCTC 000400 000401 TTCTGGCCCT TCTTGCCTTA GGCTTATCTC CCTTTCTGTG CACCCAACCC CCACTAGGCC ACTTTTGTTT TCTCATAGCC 000480 000481 CAACGTTCTG ATGGGATGAA CAGAGGGGAG GAAGCTGACA GTCTCCAGCC CCCTACCAAC TCCTCAGTGG AGGTGCCAGA 000560 000561 GAGGGGTACC ATAAAAGTAG CTGACATTCC GAGGCCTCTG CCCACCTCTA GCTCACCTTC CTAGGGGAGA TTCCTGAACA 000640 000641 TCCCTGACCA CTCACACCGC ACTCCAATTT TCCCTCCCAC TTCTTGGGAG CCTTCTAGTT CCCTGGAGAC CTCCTCTCAA 000720 000721 GTGGGCATGT CCCCAGGAGG GGTAAAAGGA TAGAGCCTCA CATAAGTTAG AAATGGGCAG AGCTCTTGGT ACTACCTGTC 000800 000801 TCTTTTCCTT CTTCATCCAC CACTTTCCCC TCTGAGGAGG CTTGTCTAGA TGTCTGGAGC ACTGGGAATT GGGGGAATGA 000880 000881 GGAGGAGCCC CTCAACTCTG TCTCAGTCAC ATCACTTAAT CACACCTCTC CTTCTGCCCC ACCCCTCTGG CAGTGAAGGC 000960 000961 TCACTCCCAA CAGATCTCCA CCCGCTTCCG GGAATGGCCA GAACTCGCCT CCTGCGTCTC TCTTTCCATT TCTATCTTCC 001040 001041 CCTCCCCCCA AGAGCTGTAG TGGCCTTGGC CTCCTGGCAG TGCCTTCCCA GCCTGTTTCC ATAGAAACTG GGTAGGCTGT 001120 001121 GCAGTGCAAG AATCGGAGGG GAGACAGGAG CAGGAAGGAG GGACCAAGCC TTAGGGACAG CCCCCGATGA AAGGACCGAG 001200 001201 AGAAACGGGG AGCTGCCCCA TGCAAACTGA GGGTGGGACC CCGATTTGGG GAACCAGGCG GGATGGAGCG TGGAGTGGGG 001280 001281 GGAAGAGGTA GCAAAAGCTT GGTAGCTGGC TTTGCTGCCT CCTGAGGAAG GGGCACAGAA TCTCCCCTTC CCTGCCACAG 001360 001361 GTAGTGGGGG TTCCTCCCTC CCCACCCCCT TAAAATCCTT CTTTACCAGG AACTGCCTGA TCCAGATGAA TCTCTTCTCC 001440 001441 GGGGCCCACT AGTCTCTAAG AAAGGGACCA TGGAATTCCT TTCTTCCCCG AAGAGCTCCC CACTCTCCCT GACCAGAGTC 001520 001521 TCCTTGATCT GGAGGCTGGG CAGCCCCCGG GGACCCGGTG GCCGCCGCTG ACCCCGTGGC ATGCGGCTCT CAAAGGCCCC 001600 001601 ATTCATCTCT GGGGGCTGAA GGCGCCATTG TCCCCAGCGG GGGGTGGTGT GGGGAGTGAA GGGGTCTGGA CTCAGAAGGA 001680 001681 AGGAATGCGT CTGGAGAAGT TGCCCCCGGG GCTCCAGTCT CAAGGTCCCC ACCAGATCTC CATCGGGACC CTTTCACGAC 001760 001761 CCCGAGCCCT TTCCCCAGGA GCTCCCAGCA ACCTTCGCGC TTCTCCGGAG GGTGGGGTCT GCCGCGGCGC GGGGGCAGCC 001840 001841 TCACCCCACC TCACTGCTGG ACTCCGGAGA ACCATTTCTG GGACCGGGAG CTGTCCAGCG CCTCGGGTCC TGACGGACCG 001920 001921 CTGATTCGCC TAGGTGCCAT CGGACAAGCG GGTGCTCAGA GCCAGCTCTG GTGGCTCGGG AGCTTTCCCC CAACCAGGCT 002000 002001 AAGACCACTA AACCACGCCT GGCCCGGATG AGCTTGGATG CAGCTCCGAA CGTGGGGATC CATCGGTGCT GAGAACTGAC 002080 002081 CTAGGGAGCA CCTTGACCCC TGCCCTATCT GGGCACAATT GAAGGGCCAA GTGCCACCAG CCCACTTTCC TGGAACCCTG 002160 002161 TCTCAGACTT GGGCAGGAAG AAGAGCCATG AGAGGTCAGG CCTTGCCTCT CCCCGCGTTC CCCATCTTTC TCTGTGCCTC 002240 002241 TGTTTCTGTT TTCCTCCGGC TCTCCTCCCT CCTCCTCTCT TTCCTTCCCT GCTGGGTTGG GGGCTGCTGA ATTATCATTT 002320 002321 CTCAGCTCTG CTAATGTGCT CCCCGCTGCG GGAAGGGATC ATAATTCTGG GAGATGATTA AGTTTCAAAT TGTTTTTCTT 002400 002401 TGTGTTGTTG AAGATGAGGC TTTAATATGG TCCTTCCTCA GCCCGGGAGC CTGCCCCCAT TCCTCCACTC CTAGTACTCT 002480 002481 CCTCACTAAT AGGCTAGGTT TGGTACCATG TCTTTTGTGG TCCTTGCCAA ACTTTTATGT GTATGGGGTG GTAAACGAGA 002560 002561 GGGGTATAGA CCTACCCTTT ACTCAAAGGG GAATTttttt gtttttgttt ttttttgttt tttttgagac cgagcctcac 002640 002641 tctgtcgccc agattggagt gcagtggcgc catctcagct cactgcaacc tctgcctccc gggttcaagt gattctcctg 002720 002721 ccttagcctc ccgagtagct gggattagag ctgcgcgcct ccacgcctgg ctattttttt atatttcact agagacaggt 002800 002801 ttcaccatgt tggccaggct ggtctcgaac tcctgacctc aaatagtctg ctcgcttcag catcccaaag tgctgggatt 002880 002881 acaggcatga gccactgtgc ctggcTAGGA ATACATTtaa tatagtggtg agaaacactg gtttggaagt cggacaagtc 002960 002961 aacatttaaa tcctgactct gccacttact actcaggtga ccttggatga gttacttgaa ctgtctgagc ctccgtttct 003040 003041 tcatctacta aatggggata ctgtgaatta cctcatggag tgttggtgag gatttaaagt gataaatcat gtaaagtggt 003120 003121 tagccgggtg tacagcttat ggtaaaactc agtgaatgtt agTAGATATT ACTACCCACA TACCTTACCC TGTTTGATCC 003200 003201 TGCTTCCCAT AGCCTTCCTG ACTTTGTTCT TCTGTTCAAT GTTTATCTAA TGCCTACTGT TTTCCAGGTA CTGTACAATA 003280 003281 GAGAGTAAGT TATCCAGGAG TGAGGAAGTT GGCTTTCTTA CCTATTTGTT CCTCAAACAC CCCTTCCTTT ACCTCCTTCC 003360 003361 TTCCTTCCTT TCAACTGAAG TTTACTCTCA TTTTACCCTC CCACCGGCTT CCAGTTCTTC CTGCATTGTT CCTACTCCAT 003440 003441 TTTTCCTTCT TTCACTGATG TCTTATCACT TCACTTTGAT TCTTATCCTC CTAATACACA TACATTTTTT CACCTTCTAC 003520 003521 ATTATTCTTC ATCCCATTTG GGGCCATCAT AGTGAAAAAA AGGGCTGAAT TTTCAAACTA GGAAAGAGAA TTCTGTCATG 003600 003601 Ctgtgtgtat gtgtatatgt gtgtgtgtgt gtCTGAGGAA CACACACATT AATTCACATT CAACAGTAAC TCTATAGCTG 003680 003681 ACTTCTGAAC TCCTACGTTT GAACTGTGTG CTTGTTTGCC TCTCTATCCC CTCTATTTAA GCTCTTAAAA TACAAGTCTA 003760 003761 TTTCTTTGCC TGCCTACCTG TCTGCTCTGT CCTTGCCTCT CTCTCTTTTG GAATTTGttg ttttaaacat ctttattgag 003840 003841 atacaactga tatacaaaga actacatgta tttaatatgt atgatttgat gaatttggaT GTCTTTGTTA TATTCTAAAT 003920 003921 GGGAATGCTT ACTGGTTGTT AGTATGAGAA GCTGATTTAT GATAATGTGT TTTTGTGTTT GCTTAACTGG CCTCCTACCT 004000 004001 ATCACCATAC TGGTGATggg ttcaggatac actacaccaa aatgtggcaa cttgacattt gagaaaacag cagaagcagg 004080 004081 aaggtccctc tcccttcttc ctggaagtgg gccaaaaacc tctgaccgtc ttcctccttt tctcctgagg tagaacataa 004160 004161 aaccctaatt ccagaggtat cctccccata cccagaggaa aggagcatcc ttgtcctcaa gttacacaga gttactaagt 004240 004241 agaatttgaa caaagagacc ttgctaagtt ttctccagtt cactaccact agactatacc tcctttgtcc agtcatactt 004320 004321 ctgcttgcct gtccactctt aatAAGAATC CCAGTCTggc c |
Predicted Small Protein
Name | NONHSAT104281_smProtein_329:490 |
Length | 54 |
Molecular weight | 5782.6997 |
Aromaticity | 0.0566037735849 |
Instability index | 68.5226415094 |
Isoelectric point | 12.004699707 |
Runs | 7 |
Runs residual | 0.0281868384722 |
Runs probability | 0.0397960986196 |
Amino acid sequence | MKLLRSSLPALATSIRTHSFTHPSSGPSCLRLISLSVHPTPTRPLLFSHSPTF |
Secondary structure | LLHHHLLLHHHHHHHLLLLLLLLLLLLLLEEEEEEEELLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |