NONHSAT104307
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT104307 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3557 nt |
Genomic location |
chr5+:141724981..141871683 |
Exon number |
12 |
Exons |
141724981..141725050,141732791..141733186,141755167..141755458,141762162..141762630,141783766..141783918,141791135..141791666,141825319..141825816,141843535..141843624,141857245..141857689,141866182..141866328,141866338..141866354,141871235..141871683 |
Genome context |
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Sequence |
000001 GAAGCTAGTA GAAGATTTGT ACCAACAAAA CCAAGGAGTA AACAACTTGA GAATAACTGC ATGAGCTCAG GGCTTGGACT 000080
000081 GTCAGATTCC ATTTCTAAGC TTCCAGAAGA GCGACACATA GACACTGGGG AAGTCAGAGC CTTTGAACTC CAATGCCATC 000160 000161 CCCGTCACCC ACCTCCACCA CCAGCACCAC CACCGAATGG CACTTTGGAC AATTTTTCCC TCTCATGTGA CTTTTGTCAT 000240 000241 TTCTTACGTC AGTTGGAGCC AGCACCTCTC AAATCCATCT TCTAAAACCC AGAAAATTGT GTGTAACACA TGATGACTGA 000320 000321 AAGGGAGTAG GCTGACCAGT TAAGAGCCTG CCACTGGAAT GGAAGGCTGT GGGAAGGTGA GGGGACGGTG GACATCAACC 000400 000401 GGGAAGAGCT GAAAGATGGC GTTACCAGGT ATCTACCCTG CTACCCTGCA TAGAATTCCC AAGACCGTCC ATTGGATTCG 000480 000481 AAGGGGTCCT CACACGAAGC AGGAAGTCAC CCTGTATCTC AGAACTGTGG AGATCTCAGT CCGTGGTCAT CTTGTCATAC 000560 000561 ATGACATGGC AGGAGCCATG GTCCAGGGAA CCAGGTGGCT GCCAACTTGC AGAACAGGCG ACAAAACCCC AGCCTGGACC 000640 000641 CCCAGACCAT GCACTTCTCC CTTTGCCCTG CTTCTCCTCT GCCTGGTACA GGTTTCCAGC CAAGCTCTGC ACCGGCTTCT 000720 000721 ATGTCTGTTT GTTTTCCTTA GAAGCTTCCT ATAGAAAGCC TGGAGGAGCA ACTGTGAGGC CCCGAGATGG GGAGGGAGCC 000800 000801 CAGATTCTGG CTTTTGGTCT TCCTGCTGTT TCTTTTGTCT GATGCTGGTG CATTTCCATG GACAGTTTAT TTCCCTTGGA 000880 000881 CACTGTGGGC TTGGTTTTTC CATGAGTGTG TGACGCTGTG GTCATTCACC AGGCCCTGTT GGTGGTCTCG GTGGGGGCCA 000960 000961 CAAGGCTCAG ATCTCACCTG CCCCTTTTCC TACCTCCTCC ACTCTTTGCT CAGCCATCAA CATTCCTTTC TGTCCCAGAA 001040 001041 GTGTTCTTTC CAAAATGCAG ATCTGCCCAT GTCCCCTAAT GACGTCACTT ATTGACTTCG CTATGGAAAA GGAGCGATGG 001120 001121 GGAATGTGGC CGGAAGGACA GCAGAGAGCC AGACTGTGGA GACCTTTGAA TTCCAGAGGA ACAAAAGTAT TTTGGGTGGC 001200 001201 TCACACCTGT AATCCCAGCA CTTTGGGGCT TTTTTGCTGG TAGACGCACA CCATCACATC CTACATAATA TTTAGCTCTG 001280 001281 AGGCGTTTCC AGATGGGAAG TGCGTTTCTG TATTTTCATA GCCGTGTTCT CTACGTGAAT GGACTGGCGT GAAGCTGGGG 001360 001361 GCTGACGGCT GGCAGGGCAG AGTAGAGATG GGGGTTTTCA TCATGTTGGT CAGGCTGGTC TCGAACTCCT GACCTCAGGA 001440 001441 GATCTGCCTG CCTTGGTCAT CCAAAGTGCT GAGATTACAG GTGTGAGCCA CCATGCCTGG CCTAAAATTT TTCTTTAAAC 001520 001521 ACTTAAAATA CGTCACACTA TGATAATCTA ACTTTTCTGT TCTTTGTTGT GAAGTATACA GGAGCCTCTA AGTGGAAGTG 001600 001601 GCTCAGGGCT CTCTCCTGGC CTTTGAGAGG TTAACACTAT TATTTGCTCC ATTCAACCAG CAAGGGATTG GAGGTCTAGG 001680 001681 GAGGCTGTCA CTTGCACAAG GTCACACAGC TGTAGTAAAC TTCTGAGTTT GGACTTAGCC CCTCTGCTTC TAAAATCCCC 001760 001761 TCTCTGAACC TCATACTCTC CAGCATCTCT TCTAGTTTTT TGCTGTTCTT TGCTACTCAG GCTGAGGCCC CGAATATAAG 001840 001841 TAGATGTGTG TTAATAAGTG TCTGTGCATG CATGTACATA TACACAGACA TTTCCCCTGT CTCTAGAGTC CCCTTTCGTG 001920 001921 CCAAGTTTAA GCAGCTAACT CCTGTCAAGC ATCTAAGGGT TAGTTCAGAA ATGAGAGTGT ACAATGGCAC CAGCACCATA 002000 002001 AAAATAACTG GATGGTTGTA TTAATCTGTT CTTGGATTGC TATAAAGAAC TACCCGAGAC TTAATTTATA AAGAAAACTA 002080 002081 CCTGAGACTT AATTTATAAA GAAAACTACC TGAGACTTAA TTTATAAAGA AAAGAAGTTT AATTGCCTTA CGGTTCCACA 002160 002161 GGCTCTATAG GAAGCATGGC TAGGGAGGCC TCAGGAAACT TACAGTCATG GTGGAAGGCA AAGGGGAAGC AGGCATGTCT 002240 002241 GTCCTACATG GCTGGTGCAG GAGGAAGACA AGGGAGAGGT GCTACACATT TTTAAACAAC CAAATCTCAT GAGAACTCAC 002320 002321 TATCACAAGA ACAAGGGAAA AATCCACCCC CGTGATCCAG TCACTTCCTA CCAGGCCCCT CCTCCAACAC TGGGGATTAC 002400 002401 AATTTGACCA ACAACTTCCA GTAAAAGAAG GCACTGAGGT TTAAGTGCTA CGTGGGAGCA GTTGCCGATT TTTGCAATGG 002480 002481 GAGGCTGCAT AGATTCAAGA TTTTTAGTAG AGATGTGGTT TTGCCATGTT GGCCACACTG GTGTGGGACT CCTGACCTCA 002560 002561 AGTGATCCGC CTGCTTCAGC CTCCCAAAGT GCTGGGATTA TAGGCGTGAG TCATGGTGCC AGTGAATTTC TATTAATTTT 002640 002641 GATTATTATT TTATAAGTTT GAATATAACC AACTCACCTT TCATATATTT ATAAGTCTAA AAAAGTCAAT GGACAATGTA 002720 002721 TAATTTGGAA ATCACTTATT TCCATTTGGA GGGGGATCTC AGGGGGATAT AGTTAGCTTT GGAGAACATA AGATCATTTG 002800 002801 GTTTTAGAGG TCACCTTATC CTGATCGCAT GAAAGGAAAG GATGGAATTC AAGCTTTTTA TGACCTAAAC CCTCAATGTC 002880 002881 TGTCTCTATC CTTAGTAAGA AATGGGGAAG GGGAACAATA ACGGGAGCAT TATTGAGAGC TGTTCTCCCA CATTCACTAA 002960 002961 ACTCTACCAA CATAACTTGC TAAATAAATC TTACCTATTC TTACTTCCCC ATCCCTTACC ACCATTATTG TAGCTTGGGC 003040 003041 TGCTAGCATC TGTTGCCTGG CCCAGTAGCC TTTCAAGAGT TTTGACTGAT GAGTTGACTC TCACCATGAA TTTCCGTCAC 003120 003121 ATTTACATGT TTTAATATTT TATTTCCTTA TTTTTTTTTT TCTGATCAGT TTCCTATCCA CCATGTAAAG CGAGCATCTT 003200 003201 GTGGCCATAT TGACAGACTC AGAGTACCTG TTTCAAATGT TTGGGTCAGA TGCTGCTTTT CCCTTCAGTG CTGTGCAGCT 003280 003281 CTGGTGTGTC GGCCTCCAGC TTTTCCTGGG GTCACAGACC TCGCGACCAC CAGGTGCCCA AGGAAATCAG TCGTTGAGGC 003360 003361 GAACGGCTTC ACTTCTTGTC CCATTTGTGT GTGTGGCTGG AATTCTCTAG CCTGAATGAT TCATTTAGAC TCCATAGACC 003440 003441 ACCACCTGTA TTCACAGAGT CTCAGACCGA CTTTTAAGAT GCATTTCATT TTTGTCTCAA GGTTACATAT CTAACCAGTG 003520 003521 TGTTATAAAG GGTATTGGCC ACAGGTAGAG AATGTAT |
Predicted Small Protein
Name | NONHSAT104307_smProtein_560:841 |
Length | 94 |
Molecular weight | 10156.553 |
Aromaticity | 0.129032258065 |
Instability index | 41.6355913978 |
Isoelectric point | 7.66143798828 |
Runs | 16 |
Runs residual | 0.0411190760653 |
Runs probability | 0.0285285285286 |
Amino acid sequence | MTWQEPWSREPGGCQLAEQATKPQPGPPDHALLPLPCFSSAWYRFPAKLCTGFYVCLFSL EASYRKPGGATVRPRDGEGAQILAFGLPAVSFV |
Secondary structure | LLLLLLLLLLLLHHHHHHHHLLLLLLLLLLLLLLLLLLLLLEEELLHHHLLLEEEEEEEE EEEEELLLLLEEELLLLLHHHEEEELLLLEEEL |
PRMN | - |
PiMo | - |