NONHSAT104364
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT104364 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3000 nt |
Genomic location |
chr5+:143861871..143865249 |
Exon number |
1 |
Exons |
143861871..143865249 |
Genome context |
|
Sequence |
000001 AGCGGAGTGT GTGTATTTAT GTGTGTTTTG TGTTTATGTA TAAAATTATG TATATATATG TACATATGTG TGTACATCTA 000080
000081 TCTTAATGTG TATATATAAA TATATATCTA TAGCTGTACA TATGTATACA CCCATAAACA AAGCTCATAG TTTAAAACTT 000160 000161 TGGAATTTTC AGTTTGGAGA ACTTATTATT ATTACAATTT ATATTTGGTT TCCTAGACGG TCTAATATAG TTCTAATTTC 000240 000241 CAAAATTCTC TTCCACTAAA AGTGGATATA TTTATTTATG GTGCCGAGAA CATTAACAAA ATATTTAGAT TTAATATCTA 000320 000321 TGAATAATAA ACCAAAAAAA GTGCATTTAA GGAAACACCA AACTTGTAAA AACTGGCTCT CTTATCCAAA CCATTTGTTG 000400 000401 GAATTTCAAA CTACATGTTT TCACACTTCT TCATTCCAAA AAAAAAAAAA AAACCAAACC AGAAAAAACC CAAAACACTA 000480 000481 CCAAATGAAC AGTGATAATG TTTAAGAAGA AAAAGAAAAA TGTAGGTGTA TGATAGCACA AATTCAATGG TTATTGCCCT 000560 000561 AGTGGTGCTT CACTTACCTA TTGGTTAATT TATTATATCC TGGTTAATTT CACTTTATCA CTGATGAGGG TTCCTGTGTC 000640 000641 CCTACATGAT TTATCGGTGG AGCTAATTAT CTATTTATTT AAAGCTATAG TAAATAATTT ATAATATGCA TATTGTAAAT 000720 000721 AGATACTAAA AGTCATGGGC ACATTGTAAT AATCACAAAG TTTTAGTCTC CTGCAAATAA CACTTGAAGT CTGTTTATAC 000800 000801 AATACCCAAA TAGTTGCTCA AAGAAAGAAC AATGTAAGTC AAATACAAGA AAACCTTACT TACCTATTTT GGCATTTTAC 000880 000881 AGACATAACA ACCAAATTAA CGAATTTTGG CCATCTTAAG AATACAGTAA GTTGTGTACT CATTCATAGC CACATGCTTT 000960 000961 GCATATTACT GGGGAATGTG AAAAATATTT AAAGTCAACC TATGCAAACA GAGATTCCCT GCTGCTCCTT GGGATCAGTT 001040 001041 TGTATGCACA CAAGCCCATG CCTTCAACTG ATAGTCCTAG CACAGATCCC TCCTCCCAGA GATCTGTCAG GTGTGCCCAC 001120 001121 ACAACAGAAG CACTTGTAAA CTAATTAAGC ACGGTCACTG AATCCTTTTT TCACCAGCCT TCTAAAGATG TTGTCTTAAA 001200 001201 AACATAAGAA AGAAAATCCA TTTTTTTAAA GCAATGAAAT GTTCTAATTA GGTTTGAGGA CATTTGAAGG AGCGATTGTT 001280 001281 TTTTCCCCAA AATTTTGGAG CAGAGGGGAC GTTTTACATC ATCCTAACTT CATGTTCCTC TGTCATTTTA TTTTATTTAT 001360 001361 TTATTTTTAA TTCCAAAGGA GAAAGTTGAA TCAGGAAAAT TTGTCTTAAA ATATACTGCT TAGTTTAGAG ATGGACAAAC 001440 001441 TAATGTATTT TTGTAAATCA TGGGTGGCGG ATGTCAAAAT CTCTCATTAA TTACCCTGTT TTTTTCTTTA AGGAAATTGA 001520 001521 TTCATGAATA ATTGGAAAGG TATTCTAGTT AAGACACACA GAAACACAAA CTTAGCGGAG CTGCACTTCA GAGAGTCCCA 001600 001601 CTGTAATCTG TTAATAGAAT CTGCTTTAAA TGAGTCACTC CTTAGACTGG CAATGACACC CAGCTTAGTC TGTAAAATCA 001680 001681 GGAATCTTTG TGTTGGCTGA AGGAACTTAG TAATCTTAGT TGAATTCCTC TTCCCCATGT CTTTCAAAAC CAGAGCACTG 001760 001761 GGTCGAACCT AACCCACAAA ATAATTCGTC CAAATTAAAT TGACTTTTTT ACATAACATC AGCACCACCC CTTACACTTT 001840 001841 TAAAGTCAAA GACCCTGTTG ATCAGGTTAC CTGGAAATTT CAAGTGCATC TGACCAGGGA TTATCAAGCT CCTTGTGACA 001920 001921 TCTGTTTCTG ATGCTGTGAA TGTGATGTCA CCACAAATAG AGGATTCTGA ATTTTGCTGG TACTAATGCT GAGTGGTGAC 002000 002001 TTATTGGGGC GTTGCTCATG TTACTTTTTC CTGACGTCAT TCAAGCACTT GATGACTTGG GTCAGTTTGT TGCACATTGA 002080 002081 TGAATAACAA GTGACACCCA ATGAAATTAC CTCTTCTCCT TTCCAATGCA GTTCGCTTGT ACATAAATGT AACGTCAAAT 002160 002161 TGTTTACAGG TTATTTTTGT GCGTAATTGT GATAGCAGAT TTAGCTCAAA CTTTAAAGGA ATTTGTTTAC TGACTGGTGT 002240 002241 TAAAATGAAT GTGCTTATTA CAGTATAAAC ATCATTAATT ATGGACTCAC ATGAATGCAT GTCTACATGT CGTCAGTTCT 002320 002321 CAGCAGCTCA GTTATTCAGC AAAAAGTCTG CAGTCTGTGA ATAGCAAATA TACATAAACT ACTGTGACTC TAATAACTCT 002400 002401 AACTGTTTTT ACCTTGGGAT GTAACACTGT AGATCTTCGC CTGCTGTATT TCTTTCTTAC CTATTTGTTT TTGCGAGAAA 002480 002481 AACATGATAG AAAATGCTAC TACTAATTGT CCCAATGGAA TTGCACATCA TTTTGGCAAT CATTGGTTCA CTCAGAAGGC 002560 002561 AACCGCCTAT AGATGGAACA GCCCTGAGCA ACATATAAAT ATATACATAC ATATCTATGT ATGCAATATC TACACTGCGA 002640 002641 ATTACTACCA TCTATTCTCA CTGCCAATGG AAACAAACTA CTCTTTTCTT TGGATTCATT GATGGATATA AAAAATTAAT 002720 002721 TTGCTATTAA CTGCTTTCAT ATTCTGTTTA GTTCTTATAG TATGGTAAAT GATACAGGTG CAGTATCAGT ATTGTAAAAT 002800 002801 TGTATGGTGA AAACTACAAA AGTCATTCTG TGGATATATT TTAAAAGGAA GAACAGAAAC TATATTTCAG ATTCTTGTGT 002880 002881 GAATATAATT ACAGAATAGG TAACTATTTT TATGTGTTTC CATAAATGAC TCCATTTCAT ATGCATTGTA ATTTAGCACA 002960 002961 AATCATAATA AATCATTTGG TAACAAAAAA AAAAAAAAAA |
Predicted Small Protein
Name | NONHSAT104364_smProtein_2483:2701 |
Length | 73 |
Molecular weight | 8663.6449 |
Aromaticity | 0.194444444444 |
Instability index | 59.0680555556 |
Isoelectric point | 6.62664794922 |
Runs | 13 |
Runs residual | 0.0396390916464 |
Runs probability | 0.0636405636407 |
Amino acid sequence | MIENATTNCPNGIAHHFGNHWFTQKATAYRWNSPEQHINIYIHIYVCNIYTANYYHLFSL PMETNYSFLWIH |
Secondary structure | LLLLLLLLLLLHHHHLLLLLHHHHHHHHHHLLLLLLEEEEEEEEEEEELLLLLEEELEEL LLLLLLEEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLL LLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooo oooooooooooo |