NONHSAT104496
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT104496 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
8396 nt |
Genomic location |
chr5+:148786442..148808241 |
Exon number |
2 |
Exons |
148786442..148786641,148800044..148808241 |
Genome context |
|
Sequence |
000001 TGTGGCCAGG GAGCCGCAGG CAAGGGACTA AGGGGAGGGG GGCTCAGTGC CAGCTGCTTA AAAATGCCCC TGTGGCAGCG 000080
000081 AGGGGCACCA GAGGCTGGGT CTAATTAGTT GAGAAGCAGT GACACCCCCA ACCACTCCCC AAACAGGCTG GCTCCCGTCT 000160 000161 CCAGGCCCCA AGGAGCCACA CCTGGACCAG ACCCCAGGAA AGACATGTGG TGGAAACCCT ACGGCCCTGG AGCCCAAGGA 000240 000241 GAGCAACGGC TGTAACAAGT GCACAGGTTT GAGTGCGCTG AGACAGGGGA ACCGTGGGCA AAGAGGTCCC TCCAGAAAGA 000320 000321 GCTGGGTGTG AGCATGGGTT CGTGAGCTTG CCTGGAGCCC TGGCCTCAGC CCTCTCTCAC TGAGGTGCCA TCTGGCTCGC 000400 000401 AGATGTGGCC CATTCCCAGC CCCTCGTGTT TCTTGGAAAT GAGAAAGTCC AGGAAAGGGC ACAGGGGCTT TCGCAACGAC 000480 000481 CGTGGCGATG ATAGCTTTGA CGTGTGGTCA TCCAGCCGGC CACTGCCCAC ACCCAAGAGA AAGCTGGATT GAGCATCAGG 000560 000561 AGCCTGGGTT CAAGTCTGCC TCTCAAGCTG TTCCACAGGT GACCCTGGGC AAATCGCACA GGCTCCTGGA ACTTCAGAAA 000640 000641 GGGGAAGAAT TATTCCTGCC TCTGGCGACA TCAGCGAATG TGCCTTGAGT TACGGGAGTG TTTTGAAGGC TGAAAGCTTT 000720 000721 GTGTACACGG AAGGGGTCAA AGACAGCCAC AAGCCTGTCC CTTTGGTCTT GGTCATCATG TTAACCCCAG GTTTCGATTT 000800 000801 AATCCTACAT GCTCCTTTCT TATGTGTGAG GCTGAGGTGG GGGCATTGGT CAGAGGAGCC TCTGGGAAAT TTCCTTTCAG 000880 000881 GACAGTTCTT TTGTTAAGGG GCCTGGGTGT GCTGAGAAGG GAAGGTGGCT CCTCCTGCTC TTGGAGCTTG GAGTTTCTCA 000960 000961 CAAGCTCTCC CTTAAAAGCC AGGCAGGCCA AGAAGGGATA ATGGCTGCTC AGGGCCCAAG GGGCAGGATC TCTGAGGCCC 001040 001041 GGAAGATCTC AGTAGGTTTA GCCCAAGAGT ATCCAGAAGT GGCCCAGGCC CATTCTCCAT CCCTCAGAGC CTGGCAGCCT 001120 001121 GGTCAGGACC CTCAAAGGCC ATGACCGTAC CCGTAGGGCA CCCTGGTGTC CTTCTGACAG GTGGGATCTT TGTTTCTTAC 001200 001201 AGGCAAGGGC GCTAGCTGGT GGGAGCCACC CCGCCATGCT GATGTCAGAG AAGCAAGAAC TCTGGAGAAG CAGCCTCCTG 001280 001281 GGACCAGAGG AGGGCCAGCA GCAGGCAGCC CGGAGACAGA ACTGTGAGCC CACCCCACCT CCACCCTTCC GGCACCCACA 001360 001361 TCCGCTCCCC ACCCCAGCCC ACCTGCAGGT GGCTCCTGGA GTATCCTGGG TCCCTCAGGA TAAACTCCCC ACCCTAACCT 001440 001441 CAGAATGACC AAGAAACTGG GCCTGAGGAT GACAAGAAGC AGAATGGGCC TTGGTAAAGG AAGACCCCCC ACTGATTGGT 001520 001521 GGCAGTGCGG GCAGTTCAGG GCTGTCAGCG TCTGGGTTGT AGGTAAAAAG AAATGGAACC CAAGAAGGGA AATCCAACTA 001600 001601 GGAGCCAAGA ATCCGGTCTA CCCCATCCTC CTTACGAAAT AGCAATGCAA AGCCCGTGTG ATTTGGACAT AAAGCCTCTG 001680 001681 TTACTCAACT TGATTCGGTG AATAACAGAC TTGAAAGAAA TGTGGAAAAT AATAGTAATC TTCCCTAGAA AGGAGTAAAC 001760 001761 AGGGTTGAGC TCCCAAAGCA GGAAGACCTG GGGCTGTGTG ATCTTGGACG AGTCACTCAA CCTCTCTGAG CCTAGTGATA 001840 001841 AAGAGCCAGC TCATAGGGCT TTGAGAGGAT TTGTGAGGTT GGGCTGGTGT CCCCAGGCAC AGCCCTTGGC ACATAGTGAA 001920 001921 ACTCAAGAAA ACAGAGCAGT TTTTACCATT CATCACATTA TTCCCACACT TGCCAATTTT TTAAGTTCAT GCACATGGTG 002000 002001 GAACAGGTAG GGTGAGGTGC CAGCTCCATA AGATGAGTGG AGAAACTGAG GCCTGGAGAG GTGAAAGCAT TCACTCAGAG 002080 002081 TTGCATGTAG AGTCAGTTGC AAAGGAGAAT TCTGGCACCA GTTCTCATGT GGATGGAAAA AGTGCAGGAA GATTTGGAGG 002160 002161 TGAGCAGAGG AGAAGGGAGG AGGAGGCCGG GTTCCAGGAA AGGAGCTGAC ATCCAGGGAT GTGGGACAAG GCCCAGGCCT 002240 002241 GTCTTACATA ACATGGTCCA CCTGTTCACC CCTGCAGGCC CCACAAATGT GTGCAAACGT GCACCCCGGC ACAGCGCACA 002320 002321 CCCAGTCCTC CCTCACTGGC AAATAAGCCA CAGAGACTGG GTTTAAACAA ATTGGATTAG GAGGGCTACA GGCGCCTCCT 002400 002401 CCCCCCGACT GTCCGGCTCC GACACTAAAC AGACCTGCAG AACTGCCAGC TGTGGTCTCT CGGACACACT GACAGTCGGT 002480 002481 CCTTGGCTCC CTCACCCCAC CCGTGGGCCT CAGGAAGGGG GTTGGGGTCT GAGAGGATGC CACAGTGATG GATGGGGTGA 002560 002561 GGGAGGTTCC AGGGCTAGCT CAACAGCGCA CAGGATGTTA GTGCTTTTGC GAGGCACATT TCCGAGCTGT TCCCAGACCC 002640 002641 GCCCCCACTT CCCCCCTCAC CCTCCCCTCC GGCAGCCTCT CCCATGGCCA CTGCTGCGGG CTGTGAGCAG AGCCCCGTCC 002720 002721 TTGAGCAGAT TGACCTCATC TTTCAGTCCT GCAGCTGGGC TGAGCGGGGA GTCAGCTCAG AAGACACTGG CCTGGGGATG 002800 002801 AGACTCGGGG CATGCTTCAG AGGGAAGAAA GAGCTTCTGA ACAGACAATG CTGTCTTAAA GGTGGCATCT TGGTGCTTTC 002880 002881 TCATGCCTTG TTTTCTTTCA TCCTCAGAAT GTGTCTGGGG GTGAGAGGAC GGGTGTGACT GCTGAAACTT CCTTTCTTGG 002960 002961 TGATTCCACA TCACTCCTTT CTGATCCCTG AGCCTGTGCC ACGCCCTGTG TGATGTGCCG GGGACACCAG GGTGAATACT 003040 003041 TACAGGCCCT GTTCCCCTTC CTTCATGAAA CAGCCTCCTT CGGGCTGGGT CACTGGGCAC TGGGGCCTCC CTGGTCTTCC 003120 003121 AGGATTGCAA CTTCACAGAA TCCCTTTTCC ATAAGGCACA TGAAAGTGAC TGTGACCCGC AACGGGAGCC TTGACAACCA 003200 003201 GCCAATTCAG AACACAGACC TTGACATCGG AAGGCCCCGA GTTCAAATCC TGCCTTGCTC CCTTTCAGCT GGAAAGCTGT 003280 003281 GGTCAAATTA CTTAGCCTCT CCAAGCCAGT TTTCCCTTCT GCAAAATGAG GTTACACAAG CTGCCACCTC ACAGAATGAG 003360 003361 TGTGAGAATT AATTCTTATT TTCCACACCC TCATTTGACA GGGGGAGAAA CAGAAGCCCA GAGAGGGAAA GGGCTTGGTT 003440 003441 AGGATCACAC CATGAGTTGG GGGTTAAGTC AGGATGGGGT AGGTCCCCTC TTTCTCTGGG TGTTCCTCTC CCCCATCCCT 003520 003521 TATCTCAACA TAAATCCTCC CCAGTTGCCC AGGTTGTCCA GGCGATTCCT GGCACACGTC CTGGGGCCTG CCCTCCACCT 003600 003601 TTAGCCCTGC TCTGGCTTCT GCAGCAGCAG AGTCCTGGGT GACCAGCAGT GGCCCCTGGC CCTCTGAGTG GTGGTGGAGG 003680 003681 GTGGGGGTGC ACTGCAGCAA GCTCCCAGCC CAGAGCAGCC TGGCCATATA AGGGAAGGAG CTCAGGGAGG CCTCCTGGCT 003760 003761 CAGGCCTGGC GAGAAAACCC AGACAGCCAC TGTTTATTTT CTCCTCCCCA GCTCACCCAC GCCTCTCCAA GCCTCCCAAC 003840 003841 AGAAGACAGA GGTCCCCCAC AGCCAGAGAC ATTTCCTGAA GACATGGGGA ACACAGAGGC AGAAACAGCC CATCCACCCA 003920 003921 GGAGCTGTCC CCCACACTGC CGGGAGCCGG CACCCAGAGC CGCCAGGTAA AACTGAGGCC ACCTGGTTCA ACATCACCTT 004000 004001 TCACAGAAGG GGAAGCAGCC ACAGAAAGAA GGGCCTCGTT AAGAAGTGGA ACCTGGGACC CCCAAGCGGT GTCTCTCATC 004080 004081 CTGACTGGGG ATCCAGAGTA GGAGGGAGCC TTTGGTGGGG TAAGTGGAAT GGGGCGGGGT GGGGGGTGGC CATAGACCCC 004160 004161 TCTTCTCAGT AAGGCCCTCA TGTGAAGGAG GCAGGGGTTG GGACAAGTGC TAAGTATGCA AGACTCAAGG GAAGAGCTGC 004240 004241 TGGAGCCAGG AGAAGCACCT CCCTCCCGGC CCCTCTGCCC CTCCTCATAG CCCAGCTGCA CTGACTCCTC CTCCAGGAAG 004320 004321 CCTTCTCAGC TTCCCCAGGG GTGGGAACCT TTTTGTCCTC CAGGTGTGCT TGGCTGTCCT TTCTTGGGCT CTCTCTCTCT 004400 004401 CTCTCTCCTC ATCCCACTTG AGTCTGCCCC CTATTCACCT TGTGAGGGGA ATTTTCCTTC TACTCAATCT GACCGAGGTC 004480 004481 CTCCAGGTCA AGGACAGCGA GGCTCTCAGT CCCACTTCCC CTTGGCACAT AGAAGAGGCA GTGCGCTGAA GGGACAGGTG 004560 004561 AAATGATTAG ACCCTGCCCC CAAACCAAGG CCTGGCCAAT TGGACAGGGC ATGAGACATT CAGCGTAGAG GTTAAAACGA 004640 004641 GGGCCCTGGG TTAGGAACCC CAGCTCAGTT CTCAGCTCTG TACCCTTGGA AAATTCCCTT CCCATGGAGC TTTGTGGATG 004720 004721 CACAAGGACT TGCACAAAGA AAACATTCAA TATCCAGGAC TATAAAATTC CACAAATGAT TGTGCTTATT ACATTCATTA 004800 004801 TCACGATGAT TATTCCAGAC ACAAAGGAAC AGAACGAGGC ACCAACAGCA AGGGGCAAGC AGATTCAAGG GCCACAGAGG 004880 004881 AGATGGAGGC AAACACCTTC CCCTGGTCAG AGGCTGTGCC TCAGCCCTTC TCCCTGCATC AGTTTCTCCT TCAGAAGCAT 004960 004961 GGGACTACCT CCCATCTAGT TCTCGTTTCT AAACCTAGGG GAGATGCTAT CTTTGCTGCA ATAATCTTAG CCTACATCTT 005040 005041 GGAATGGAAA TGGCCTTGGT GGAAATGGTC TTCAACTCCT CTGGTCCAAG CTCAGGCCCT GTGACCCTGG AACAATCCCC 005120 005121 TTCCTGGTCC TCCATGTAGG AGCAATAACA TTCCCTTGCC AGCAGCACCA GCCATTCTGA TGATTAAATG GTATCGGACT 005200 005201 CTGTTTTCCA AACTCAGTCA TTCAGATGCC CCCTATTTTA TTTCTTCCAT GTCTGCAAAT GATTATAATA TTTTTAAATG 005280 005281 TAGGATGAGT CCTTTTTATT ACACATAGAA ATAGCTACTG TAAATAGCAA ACTCTAACAC TGTGCCTAAT TAGGAAATAA 005360 005361 AGGTAACCAT AAATACAGTA AAAATGAAAC AATGTTATTA TGGTTTAACC TGATAGTGTG GCTTGCAAGG CCCTGGGCCT 005440 005441 GAAGCCTGGG CAATAAGTGA GAGTTAGAAA GGTGTCAAAG ACATGATAGC AGCAAACTGA GGCTTTGTAC CCCACGGTAA 005520 005521 ATAGGACTGA AAGCAAATTC ACAGGGAGCA ACTGATCCAT TCCACAACAG AATGCTCCCT GTCAATTCGC TTTCCATTCT 005600 005601 GTTGTGTCCT GTCTCCCAGC AGAGACTACA AACTCCCCAA AACCACTTAC CCACCAGCTG CACGTGAGAA GCCAAAGGTA 005680 005681 GTTTATGTGA AAGGGCTTTG GAAATAATCA CGCACCAAGT GAAGGCAGAG GACACACCTT GTCAGCTTAG TTCTCAGCAG 005760 005761 CAAATCATCT CTTTTCCAGG ATAACCCTCC CTGATTCTTA TTGAAATCTC TTTGCTGACC ACACTAAGCT CTTCTCTCTC 005840 005841 AGGGGCAGTG GGAGCCGTGG AGAGTGGAAT AGACCAGCTG TCTGTGACCT GCGAGGGAGT CCAATGTCGG AATCACTCCC 005920 005921 CAGCCAAATG CACGGTTTTA AAAAATCTAT TTATTTATTT ATGTAGAGAC CAGGCTATGA GACTGGCTAA TTTTTCGTAT 006000 006001 TTTTGGATAG AGACAGGATT TCATCGTGTT GCCCAGGCTG GTCTTGAACT CCTGGGCTCA AGCGATCCAC CTGCCTCGGC 006080 006081 TTCCCAAAGT GCTCAGGATT ACAGGCGTGA GCCACTGTGC CCAGCCACCA AATGCAGTTG AAAAGAGTTT CTGCAAGATA 006160 006161 ATTCCACAGA AGAGGAAAGC AGTTATCTGG CTGGGAATAC CTTAGACAGA GGCTGTCCTC TACACAGGCT GTCAGAACTG 006240 006241 ACCTACTGAC CTGCCTGCTG GCATGATAGA CCAGAGGGAA ACACTCTTTC CACTCTTCCC AGACTGAGTG TAAGAGACAG 006320 006321 ACTTTTTTTT TTTTTTTTGA GACGGAGTCT CACTCTGTCA CCCAGGCTGG AGTGCAATGG CAAGATCTCG GCTCACTGCA 006400 006401 ACCTCCACCT CCCCGGGTTC AAACCATTCT CCTGCCTCAG CCTCCCAGGT AGCTGGGATT ACAGGCTCCC GCCACCACGC 006480 006481 CTGGCTAATT TTTGTATTTT TAGTAGAGAC AGGGTTTCAC CATGTTGGCC GGGCTGGTCT CGAACTCCCA ACCTCAGGTG 006560 006561 ATCCGCCTAC CTTGGCCTCC CAAAGGGTTG GGATTACAGG TGTAAGCCAC TGCTCCCAGC CTTTTTTTTT TTTTTTATTA 006640 006641 GAGACAAGGG CTCCCCATGT TGCCCAGGCT GATCTTGAAC TCTAGGCTCA AGCGATCCTC CTGCCTGAGC CTCCCAAAGT 006720 006721 GCTAGGATTA CAGGCATGAG CACTGCTCCC AGCTCTGTTT TTGTTTTTTT AAGGAGGTAT ATTTTTTCTG TTCTCTCTCA 006800 006801 GCCCTGAAGA AAGGCTACCC ATCCCCTTCA GACATTCCTG AAAATATATG TCATCCAACA TCAAGGCCAC CACAGTGACC 006880 006881 ACTAAGCAAT GCAAGAAGGT CCTCTGGGGT GCCCTGAGAT CTTGGCAGGG CAGGAAGAGT GAGAAGGGGC TTTGCCTGCT 006960 006961 CACCTGAAAG TTCCCACCCA AGCCGGGCCC AGAAAACAAA ATGAATTATC TACATGGTCA TCCAATCAGC CACCAAATGG 007040 007041 CATTACCTAG GTCCATCATC ATGTACCAAG CCACAGGTCA GACCCAGGGC CCCCCAAATT AACAAGACAC AGGCACTGTC 007120 007121 CTCAGGAAGT GGAGATCTAG CCAGGTCAGA CCCACACACA AATAACACTG ATACTAGAGA TAATGAGATT GGGAATTATG 007200 007201 ATTCAGCCAT TCAACCTGGG CTTATGTGGC ATCTACACCA CCTGGCCCTG ATTTCAGTAG TGAGCACAGT TGACAGGGTC 007280 007281 CCTTCCCTTC ACAGGTGAGC CATGTAGTCC ACAAGTGGAG GTGGTCGTAA GTGAAAACCA CATTACCAGC ATGGTAAAGG 007360 007361 GTTAGAAAGA GGGCACCGGG TGGGCGAGAA CATGAAGCAG GGGGTGCTGA TGGCTAAAGA AGTAAAGGAG GGGCTGGGCA 007440 007441 CTGTGGTTCA TGCCTATAAT CCCAGCACTT TGGGAGACCA AGGCGGGTGG ATCACCTGAG GTCAGGAGTT CTAGACCAGC 007520 007521 CTGGGCAACG TGGTGAAACC CTGTCTCTAC TAAAAATACA AAAATTAGCC AGGCATGGTG GTGCACGCCT GTAGTCCCAG 007600 007601 CTACTTGGGA GGCTGGGGCA TGAGAATTGC TTTAACCCGG AAGGTGGAGT TTGCAGTGAG CCGAGATCGT GTCACTGCAC 007680 007681 TCCAGCCTGG GCGACAGAGG GAGACTCTGT CTCAAAAAAA AAAAAAAGTC AAGGAGGGTT TCCCAGAGTG GCCACTTGAT 007760 007761 TAGAGACCTA GCACAGGAGG AAGAGATGGG CAGGGAGAGT GACGGGGAGC AGCACAGTCC CTGGGAGCCC GAAGTGGGTG 007840 007841 GGCACAGGGC TCCCTAGGAG AATGGAAGGA CATCTATGAG CTGTAGCCCA AGAGGAAGAG GTCACTGGGG CTAGATGCGG 007920 007921 CAGACCCTCG CAGGCTTTGG GAAGGGCTTC AGAATTCAGC CTGAGGGCAA TGGGGAGCCC TTTTGGGATA TTAAACTTGA 008000 008001 GTAAGATATG AGCATATTTG CATCTTGAAA AATCATTATG GGAAGATGGC TGGGAAGAGA GGAGGAGTGG CAGAAGAAAG 008080 008081 ATAGGTTGGA GACAATTGAT TGCTCGATGA TATAAAATGT TAAGTACCAT GAATGATGCT GTTAGGCTGG AATGCGCCAA 008160 008161 GCATAAAGGT GGGGCATGGC ATCAAAAGGT AGGTCAACAT ATTAAATAAT TCCATGTATT GAAATATCCA GAAAATATAT 008240 008241 AGACAGATCT ATAGAGATAG AAACTGGTCT GCCCAGGACT AGGGGTTGTC TAAGGATAAG GAGCTTCTTT TTTGGATGGT 008320 008321 GAAATAACCT AAAATATATT GTGCCATTGT TTGCACAACT TTGTGAATAT ATTAAAAACC TGTTAATTGT ACTCAC |
Predicted Small Protein
Name | NONHSAT104496_smProtein_7013:7297 |
Length | 95 |
Molecular weight | 10380.5234 |
Aromaticity | 0.0425531914894 |
Instability index | 54.1010638298 |
Isoelectric point | 9.03436279297 |
Runs | 10 |
Runs residual | 0.0224329324699 |
Runs probability | 0.0312223988694 |
Amino acid sequence | MVIQSATKWHYLGPSSCTKPQVRPRAPQINKTQALSSGSGDLARSDPHTNNTDTRDNEIG NYDSAIQPGLMWHLHHLALISVVSTVDRVPSLHR |
Secondary structure | LEEEELLEEEELLLLLLLLLLLLLLLLLLLLLEEEELLLLLLLLLLLLLLLLLLLLLLLL LLLHHHHHHHHHHHHHHEEEEEEEEELLLLLLLL |
PRMN | - |
PiMo | - |