NONHSAT104509
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT104509 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2545 nt |
Genomic location |
chr5+:148809849..148812397 |
Exon number |
1 |
Exons |
148809849..148812397 |
Genome context |
|
Sequence |
000001 TAAAGAAGGC CAAGGCTCAG GGGTTAAGTG ACTTACTGGA GGTTATCAGA GAGGAAGTTG CCAAACCCAG GCTAGGAACT 000080
000081 GAATGGTTGG TTTAAATCCA CCCCTCTGGC AGGAGACTGG GGAATACACA TGAGCCGTGC AGACAGCAGA GGGCAGTCCT 000160 000161 GGGGGTGGGG GCGCCAGAGG GTTTCCGGTA CTTTTCAGGG CAATTGAAGT TCCGGTCACT ACTCCCCCCC AGAGCAATAA 000240 000241 GCCACATCCG GCGACGTGTG GCACCCCACC CTGGCTGCTA CAGATGGGGC TGGATGCAGA AGAGAACTCC AGCTGGTCCT 000320 000321 TAGGGACACG GCGGCCTTGG CGCTGAAGGC CACTCGCTCC CACCTTGTCC TCACGGTCCA GTTTTCCCAG GAATCCCTTA 000400 000401 GATGCTAAGA TGGGGATTCC TGGAAATACT GTTCTTGAGG TCATGGTTTC ACAGCTGGAT TTGCCTCCTT CCCACCCCAC 000480 000481 AGTTGCCCCC CAATGGGGCC TCGGCTGGCT CACAGGATGA GGGTTCAAGA AGAAGGCTGT CCCTGGAGGT AAGAGGGCTT 000560 000561 ATGAACCATG TTCCAAACCT TTGCGTTGCT TTTCTTTCCA TCGTGTCTAT TTCATAACAT CCCTGTGAGG CTGGATGTGG 000640 000641 GAACTTCAGC ACTGCCGTAC TCTTGGGAAA TTTGTCCAAG GCCACCCGGC TGAGCAGCGG TTGAACCAGG ACACCATCAG 000720 000721 GCATGCGTTT CTTGTCTCCA CCACACCCTC AACCCACTTC CCAACGCGCC TTGCGACAGG GGCTGCGGTA TTGCATCCAC 000800 000801 ATGACTGATA AACTAGTAAA CACACATGAA TTCATTTTAA AAGTGTATTC AATCAGTTAG GTAAACTAAA AACCTTAAGT 000880 000881 CTTCGTTCGA TTTGGAATGC AGCCAGAGAA CAAATGGAAA ATTTTTCAAG GTAGAGAGGA TGAAAACTCA GAACGCCCTC 000960 000961 TTGTGGCATC TCTACCCACC CTAGGAACAC TATGGCTCTT CCCCTACACA TGGTGATTGC TAACCTTGCT ACAAGACGTT 001040 001041 GGACACACAC ACACACACAC ACACACACAC ACACTGAGGT TCCTTTTGCC CCCTCACTTT TGAGCCAGTG ACTACTGAAA 001120 001121 CCCTCTCCAT TGTTGCACCA CCAGCAATGC CCCCATCACT TCCTCTCATT TACTTCCACA GGCTGGTTCA TCCTCAAAGC 001200 001201 CCTCCTTACG TAGATCTGTG GGATCAGTGA GGCTCAGAGA GGTAAAGTGG CCAGCCCAAG GTCGCCCAGA CAGCAAAAGG 001280 001281 CAGGGCCAGC GCTGATTTCA AGTCCAATGG CCTATGGCAA TTTCTTAGCC AAAAGCAAAA TCTACAAAAA TAAAAAGTCA 001360 001361 GGCACAGTGG TGAGTGCCTA CAGTCCCAGC TACTGAGGAG GCCGACGGGG GAGGACCACT TGAGCTTGGG AGTTCCTGGC 001440 001441 TGCAGAGAGC TATGATTGTG CCTGTGAATA GCCAATGCAC TCCAGCCTGA GCAAGATAGG GAGACCCTGT CTCTAAAAAA 001520 001521 TACCTAAATA ATTTTAAAAG TCAGCCTCTC TGACTGCCTA TAGAGAATGC TAACTAACTG AATGACAGAA GACCTAATGT 001600 001601 AATCCAGGTG CAAAATCAGA ACTTTCCGGC CGGGCGTGGT GGCTCACGCC TGTGGTCCCA GCACTTTGGG AGGCCCAGGC 001680 001681 GGGTGGATCG CGAGGTCAGG AGTTCGGGAC CGGCCTGCCC GGCATGGCGG GGCCCCGTCT CTACTAAAAA TACAAAAAGT 001760 001761 TGGCTGGGCG TGGTGGTGGC CACCTGTGAT CTCAGCTGCT CGGGAGGCTG GGGCGGGAGA GTTGCTTGGA CCCGGGAGGC 001840 001841 GGAGGTTGCA GTGAGCTGGG ATCGCGCCAC TGCACTCCAG CGTGGGGGAC AAAAGCGAAA CTCTGTCTCA AAAAAAAAAA 001920 001921 AATTAGAACT TTCCCCGTAC TCTTGCTAGG GCTTTTCATG GAGATGTAGA AATGGTAGTA AGTGCCAAGG CCCCAGAACC 002000 002001 CTCATGTTTG GGTCCGACTC CCACATTGCC AGAGACTAGG CAGCTCACAC AGGTGTCCCA AGCTGTCTTT CTCACAGGCC 002080 002081 GCATTGAAGG CATTTATGAA ATGAGACCCC CTCTTCCTCA TCCGTAGTGA CAGGGCTGGC CTGACCGTGG AGAAATCAGA 002160 002161 TTTGATCATG ATAGCTTCCA CTCCGTGACT GGTCACGATC TGCCAGGCGC TGTGCTAAAC ACTTTCATAG GCCTTGTCCC 002240 002241 CCTCCATCCT GATAACACCC CAGTGAAGCA GGCCCTGCTC TTCACTCCAC TCCACAAAGC CAAGGCTGAG AGAGGTTAAC 002320 002321 AGACTTACCT AAGGTCACAC AGCTAAGAAG TCGTGAAGCT GGGATCGAAT CAAGTCTGTG TTTATGGGTT TAACTATCAT 002400 002401 GTTGTGGCCC CAACCCCATT TGACCTAGCC TGGCTGGTGG GCCTTCTTGC AGTAGCTTCC CCTGGAGAAG AGGAAAAGCA 002480 002481 AACCTTCATT GAGACCCAAG CGGTCTCTCC TGTGCTCTGT GACAATAATA AAGTTCCAGC CCTTG |
Predicted Small Protein
Name | NONHSAT104509_smProtein_401:616 |
Length | 72 |
Molecular weight | 8022.3178 |
Aromaticity | 0.0985915492958 |
Instability index | 67.2887323944 |
Isoelectric point | 9.00494384766 |
Runs | 9 |
Runs residual | 0.0217939214233 |
Runs probability | 0.03293489568 |
Amino acid sequence | MLRWGFLEILFLRSWFHSWICLLPTPQLPPNGASAGSQDEGSRRRLSLEVRGLMNHVPNL CVAFLSIVSIS |
Secondary structure | LLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLEEEEHHHHHHHHLLLLH HHHEEEEEEEL |
PRMN | - |
PiMo | - |