NONHSAT104557
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT104557 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1509 nt |
Genomic location |
chr5-:149823794..149829319 |
Exon number |
2 |
Exons |
149823794..149825248,149829266..149829319 |
Genome context |
|
Sequence |
000001 CTCCGCCCCC TCCCACTCTC TCTTTCCGGT GTGGAGTCTG GAGACGACGT GCAGGACCAA GACCCCTGGA CCTGGGGCCC 000080
000081 AGTCGGCCCT CAGAGCCCTT GCCCGCTCGG GTATGAAGAT CGGGCGGATT GGTAAGTGCC CCCCTCTAGC TAATGCTTGG 000160 000161 GTTTATTTTG AAGCATTGGC CCCAAAAAGC ACGTGCTGTG CCCAGTGGAT GTGCAGCGGC TGGTCTGGTC ACTTTTGGCA 000240 000241 GTTAAGTTTG TTAAGGGAGG CTGCAAGAGG CACCTTGTGA CTTAAAAATC TCTCCCTGAA TATCTCTGTC ACCTTGATAT 000320 000321 GAATGTCCTG TTTCATTTGT GAATCTCTGT CCTACACTGC CTGGTGCAGG TAAAACTGAC AAGAGATGAA TTGTCCTTTC 000400 000401 CTCCATTCTT GAGGTCATTG CTATTAGCAT Tttgtgtgta ccatctcctg cattgtagga tgttcagcat ttttggtttc 000480 000481 cgcctactaa atatcagttg ggcatgccag tcgtgtgaca gccaaaaatg AAGTGGGGGG TACCAGCTTC TGTTATTAAT 000560 000561 ACCCTCAGGC CTGTGATCTC CTGGCTCCTT ACAGCTCTTA GGAAGGGAAC AGTAGTCTTT CCCTGCACAT TGTTCTGTGC 000640 000641 AGTTAGTAGC GACATACACT GACGCCCCAG GCCAAAGTTC CTACTGTGTC CTACTTGAAG GATGAttttg ttttcttgag 000720 000721 acagggtctg gctctgttgc gtgggctgga attcagtggc acaatctcag ctcactgtaa atttcgcctc gtgggcggat 000800 000801 ctgtccaaag gatcctccca cctgcatcta ctgagtagct gggacaacag tgtgtgccac accgggcttt ttttttttgt 000880 000881 agcggggagt ttcaccatgt tgcccaggtt ggtcccaaac tcctggcctc aggcgttcca ccagcctcag tctcccaaag 000960 000961 cccaaagtgc taggattaca ggcatgagcc accgcgccca gccTTAAAAG ATTTTTTCAG ACTTTTTTTC AGTGTCTTTT 001040 001041 TACTTAATGA AAACGAGACA GTTGCAGTTA CCCTGTCTAA AAGGGTTTTT TCCTCTAGAG AAGACGGTGG GCTAGATGTC 001120 001121 AGAACCTGGA TTTGTCCTGT GCCTCTGACA TCTTGCGCAC AGCTCAGCCT GTTTCCCTTT CTGGAAAGTG AGTTAAGACC 001200 001201 ACGTCAGGAA ATTCGAGGAA CTGGCAGATG GGGCCACTTC ATGTTCACAT CCATCTGTTA GGTACTGGGG AGTCATTTGG 001280 001281 GGAGCAGCAG GATCTGTTGC TGATTGGTTA GGCCATTGGT CTAGGGAGTC CTGGGGGCCC TTCCCATCCA GCTCCAGGCA 001360 001361 ATGACGCTTT CTCTTCCTCC CCACAGAGGA TGTCACCCCC ATCCCCTCTG ACAGCACTCG CAGGAAGGGG GGTCGCCGTG 001440 001441 GTCGCCGTCT GTGAACAAGA TTCCTCAAAA TATTTTCTGT TAATAAATTG CCTTCATGTA AACTGTTTC |
Predicted Small Protein
Name | NONHSAT104557_smProtein_527:661 |
Length | 45 |
Molecular weight | 4828.7633 |
Aromaticity | 0.0909090909091 |
Instability index | 47.95 |
Isoelectric point | 9.49835205078 |
Runs | 9 |
Runs residual | 0.0414438502674 |
Runs probability | 0.0216589138158 |
Amino acid sequence | MKWGVPASVINTLRPVISWLLTALRKGTVVFPCTLFCAVSSDIH |
Secondary structure | LLLLLLHHHHLLLHHHHHHHHHHHHLLLEEELLLEEEEEELLLL |
PRMN | LLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLL |
PiMo | iiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTTTToooooo |