NONHSAT104639
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT104639 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
4595 nt |
Genomic location |
chr5+:151186316..151190911 |
Exon number |
1 |
Exons |
151186316..151190911 |
Genome context |
|
Sequence |
000001 ATTAGCTACT GAGCTTAGAA CTCTTGACCC ATGAGATTTT TTTTTTAAAT TTTTATTTTT ATAGAGGCAG GGTCTTGCTA 000080
000081 TGTTGTCAGG CTGGTCTCAA GCTCCTGGCC TCATCAGTTC TCCTGCCTTC CAAGTAGCCG GAACTACAGG TGTGCACCAT 000160 000161 TGCACCTGGC CTCATGAGTA TTTTAGTTAG ATAAGATTTG TTTGGTTCAG TGGGTCTTAG TTTTTTAAGA CCTGTTAATT 000240 000241 TGTAATTAGA CATCTTGGGC CTTAAACTGT ATTTTTGTTT TAGTGGTGAG GTTGGGTTTT ACTTTGTGTA TTCCAGCGTT 000320 000321 CTCAACTTTG TCAGATATTG CTAGGGACCA GTGAGATAGA TAATCCAAAA ATAATAATTT GACTTTGGTT GAGTATGTCA 000400 000401 TTACCACAGT GTTAGTTGAA TTGCACTTTA GGTTAGAAAA GTTAATTTTC ACATCTGTGC TGCGGGTTAG GTGATATTGT 000480 000481 CCTCAGCACA ATAGATGAGG AAGAAACTGA ATCAGAACAG TTAAATGACA GGCTTCCAAG TCATCCATGT AGCAAGGAGC 000560 000561 ACATTTGCCT CCCAAACTGA TGCTTTTTCT CTAGAACCAT AATGCCCCCC TAATTACATT TCAGTAGCAT AGACCGCAAT 000640 000641 GAACTTCCTA CTGTAGGGAG ACTTGAGTCT GGAATACATT CAGAACAAGG TTAACATTAC AGTTCTTAAT TTCCTTTAGG 000720 000721 GCAAACAAGA TAATTAAACT TGGGTTTTGT GAGTCTTTTT TTGATTTGCA GATTATATAT GGTAACACAA TAATGGTGGT 000800 000801 TTGTTTTTAA GTTTTTTTCT CATCAGGTTT GATAATTTAA TGCAAACTTC AAATCTGGAT GTGAATAATA ATATTTTTAT 000880 000881 TATAGTATAA TCCAGGTGAG TTTATAGAAT TTGTGTTTTG TGCTTATAAA CTGTCACCTT CTGATACTTT TCTTCATCCC 000960 000961 TCTATTTGAA AAACCCTTGT AGAATTTAAC GATTTAATGG AAAATGTTGC ACTTTATAGA AGGCCATTTT AGAACTTACA 001040 001041 GGTAACCTTT TTGAAGAGCT TAGATTTGTA GACCACTGTT TATGCTGAGT GACATTTCTT TTAAATGGTT GCATTTGTCA 001120 001121 AATCTATAAA GATGTTTTTT ATATTGCAGT TTTCTTTTTG TGCTACTTAA AGGAATCTTT GCAATGCTGC ATATAGATAA 001200 001201 TTGTTGACCT TTTTAGTTCA GCAGTTTTTA AACTTGAAGT AACATCAGCA TTTATTTGAA TATTAGGTTT TAGCTAACTG 001280 001281 CCTAATGTAC CAAAAAAAAA TTAGCAATGT CTTATGTGGG ATGAGGGGTT AAGTTAAAGT TGCTGATCAA GTAATGGCCG 001360 001361 TGTGGCACAA GATGATAACT AAGAATTTCT GGTTCTAAGG TAGTAATGCC TTTTGGGATT TATATTTGTT TAATGTTGAG 001440 001441 ATTCTGGGGA CCATAGGTGG GCTTGTCAAC TCTTAACAGA CTATAGTAAA GGAGAGATGG TGGCACATGT GAGATAAAAC 001520 001521 TTGTTTATAT TTACATTCTT ATTAGTGGAT AGATATCACC TCAGTACAAC ACTGAAATTA AACTGCCTTG TTCATGCTTT 001600 001601 CATGTCTCAA ATCAAGGCCT AAATGAGTAA AAAGATGATT ACAGATTACC TAAAACCCTT AACCAGTTTT GGTTTTTGAT 001680 001681 TATGCATATG TGTTGGCTTG CAATTAGGTT TTTAGTTTCT GTTTATGTGA CTTGTTTGAA AACATTGGAT TCGTCTTCTC 001760 001761 TCCACAGTTT CTACTTGAAC CTAGTAGCTT ATTTTAATTC CCTGTAAGAG GAAAATAATA TAGGGAATCT GTTCAACTAT 001840 001841 TCCTTTAATA AATCATGTGA CTTGGCCAAT TACAGAAATT CCTAAGTGTA GTATTTTGAA ATGTGGCCAG TGTCCCAGAT 001920 001921 TTGTAAGGTA CAGTGTGCAT ACAGTGTGTC TTAGGATTTT TTTAAGTAAA TTAAGGATGT TTACCAGAAA TTATTGATTT 002000 002001 ACTGAACCAA GTATTTATTT TCAGAAGCCC ACTTTTGGGG AAGGTTGCCT ATATTTTTGA TAGTAATTAG ATGGAAGATT 002080 002081 AAATCCTGTT TAACCTGGAT AGAAACAGTT TTAACTATTG CTGAAGTTAA AATCACTTTG GGGTGGGGTG GGGTGGCTCA 002160 002161 TGCCTGTGAT CCCAGTGCTG TGGGAGGCTG AGGCCAGAGG ATTGCTCGAG GCCAGGAATT TGAGACCAGC TTGGGCAACA 002240 002241 TAGCAAGACC CTGTCTCTAC AGATAATTGA AAAGTGAGCC AGATGTGGTG GCGCATTCCT ATAGTCTCCG TCTCTCAGGA 002320 002321 GGCTGAGGCA GGAGATTGCT TGAGCCCAGG AGTTGGAGGC TGCAGTGAGT TATGATCATA CCACTGCACT CTAACCTGGG 002400 002401 TGACAGAGTG AGACCCTGTC TCTAAAAAAC AAAAAATTAG AAAACAACAA AAACCACTTC GGTTACTCAC TGTCCTCATG 002480 002481 CTTTGATGTC AGTTGTTCTC CTAAATTTTA AAATTTTGTT ATGAAGATTG GATGTACACT GATTTGGCCC TTTAAATGAC 002560 002561 ATTATACCAA GAAGTTGGTA TAAGGGAGTA GGAGATGAGA AAACTTTTTG AAAAATCATT TGGTGCATGC TAAGGTAGCT 002640 002641 TGTAGGACAT GTGGTTTTAA AAAATTCATG GATTTTGAAG AAGGATAGGG TGGAAGTAAA ATTTAGCTGA TAGCATAGGG 002720 002721 ATCATTTGTG ATTTATATAG AAAATAATTA TATTTTTGAG TGAGAAGCAT CAGACTTAAA TTTTTTTCTT CTATTTTGGT 002800 002801 TATTACCAAA AGGAACAGAG AAACTCTCAG AATTCTTTGA ATCATAGAAT GTTAGTGCTG GAAAGGACTA GGAAGTGACT 002880 002881 TGTACAACCC CTTCATTTTA CAAAGGATCA GAGAGAATTG GTTAGTAGAG TCCCAAATCT GCTTTTAGAA GTAATATGGT 002960 002961 GATCATCAGT TTAGATTCAC TGTAGGAAGG GCAGCCCTGT TAAAGTTTGT CAGGAGAAAA AGGGAAGGTA TCACTTTTTG 003040 003041 TATGTTCACC CAGTTGCTTC TGTAGTTTTC ATACCCCTGT TTTCTCAATT TTCTTAGAAC TGTCTTTAAT GGCCCAGCTC 003120 003121 TACCAGGGCT TGTTGTCTAA GGACATTAAC TTGTGCTCCC CTCAGGGATG GGTTTACTAC TAGCTGTCAG AAAGCTATTG 003200 003201 GGTATCCTAA TGTGTTAATA GCTGAAACTC AGCTGTAATT TCTCCTAAAT ACTTCAGCAT TTTGCATTCT GTACATTGTG 003280 003281 GTGCTTTTTC CACCTTGTAT TGTTGTAACT GTAAGCTCCT AGGGGGCAGC AATTTGGTCT TAGGCGTGTA CCCTGTTTAG 003360 003361 TGCCTGGCAA TGCCATGTTT ATATCAAGGT CTTAATATTA CTTTTGAGTT ATTTCTCCCA CTCTTCATGG AAGTGATGCT 003440 003441 CCAGCCTTGC TAAAACACTG AGGGTCCTCC CGATAAGCCA GGCATTGTGA TTCCTTGGCT TCAAGTGCCC TCTGTCTTCC 003520 003521 CCGAAGGTCC ACTGAGATCT ACAATCCCCC CTTTCCTCTG ATCTCTTGCC ATGTAAGTAA TTTTTTAAAA GATCAGTACA 003600 003601 AGAGCTATAT TTTTTCCTAA GAAAAAATTT CAACAGGAAT GGGGAGTAGC CCCGTTTTGG GGCTGATCTG TCCAGAATTT 003680 003681 GGAGTGAGGA ACAAATCCAT TCTCATCTAC TTTCCACATT TTCCCTCTTG TTTGAGGTCC TGTTCCAACC TTCATTTCTG 003760 003761 AAACTGTTCT AGAGCACTTT GTCTTTCTCG TAGTTCATAA CTTACCCCTT CAGTCTAGAA TTAGAATTAC ATTATCTGTT 003840 003841 TTACTACTTT ACTAGACTGT AAGCTCCTAG AAGATAAGGA CTAGGGAGTT CATCTCTGTA TTCCACCAGA AGGTACAGTG 003920 003921 ACTCATAACT AGAGTCTTTA GATGAAACTT ACTGAGTTGA ATAACTTAAT ATATTTCTGT TTTCATTCCC AAGGGAGGCC 004000 004001 ATGTCTGGAG ATAGACCTTG AATTTAATAA ATTTTAGGCA CTATACCATT TCAGTGGAGA AAATTGTTGG GAAATTTGGG 004080 004081 GGGATGGATA TATAAGGGGG AGGAAGTCAC TGGCCAGTTT GAGGTGCTTC CATTGGTCTG GGTAACTAGC CATTTCTTCC 004160 004161 TGATTGTGCC TAGTATATCC CAGACAGTTT GTTTCTATGC AGAAGAATTT TATATGAAAT TTTCATTTCT TTGCAAAAAC 004240 004241 TTGTTCCTTC TTTCAGTTCA TGACATCATC CATGCTAAAG TCTGAGTCAT CTGCTTCCAT TTTTGTTATT CCCCACATCC 004320 004321 AGTCTTCAGC TAAGTCCTGT CAGTTCTACC TCAAGTCTTT CCCGTCTTTC TTCCTCACCT ATGTAATTTC AGTAGTCTCT 004400 004401 CAGCTTCACT TAACCTTACT CCAGCCTACT TTATACACAA TGTTAGATTC ATCTTACTGA AACATAGTTC TGACCATGTA 004480 004481 TTCCATGTAT GTGTTCTCTC TCCCCTATTA GACTGTAAGC TCCTTATGGG CAGGATCTGT GTCTGAGTCA TCTTTGTATC 004560 004561 TTGCCTAGCA CCTATCAATA AATACTTCTT GAATG |
Predicted Small Protein
Name | NONHSAT104639_smProtein_4259:4459 |
Length | 67 |
Molecular weight | 7431.5749 |
Aromaticity | 0.136363636364 |
Instability index | 63.0653030303 |
Isoelectric point | 7.91302490234 |
Runs | 12 |
Runs residual | 0.0312103066594 |
Runs probability | 0.0413501737031 |
Amino acid sequence | MTSSMLKSESSASIFVIPHIQSSAKSCQFYLKSFPSFFLTYVISVVSQLHLTLLQPTLYT MLDSSY |
Secondary structure | LLHHHLLLLLLLLEEEELLLLLLHHHHHHHHHHLLLEEEEEEEEHHHHHHHHHHLLHHHH HHHLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLL LLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooooooo oooooo |