NONHSAT104646
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT104646 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3591 nt |
Genomic location |
chr5+:151329132..151650009 |
Exon number |
7 |
Exons |
151329132..151329224,151330535..151330597,151331199..151331241,151574285..151574365,151575002..151575091,151610824..151610860,151646826..151650009 |
Genome context |
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Sequence |
000001 GCTAGAATGC ACTGTCTTTG AAGCATTGAG CAGGCCCTCA CCAGACACCA AATCTGCTGG TTCCTGGATC TTGGACTTCC 000080
000081 CAGCCTCATA ACTAGGCATC ACAAATCTCC GAGAGGAACG CATCCACTTC CTGGCCTGGT AGAGCGGAGA GCAGAGGTGG 000160 000161 GCCCAGGAGT CCAAGAACTT CCCCTAAGGC TGCTAGTCGC ACCCATCTCT TGAGCAGAGA CCCAAGAGGG CAGGACAGGA 000240 000241 AGAATGGAAG TGAGATTTGG CCCCGGTCAT GTTTTCCAAA GTGCTGACAT CAGGAAAATA ATAGAAGTTA ACGCAGATAT 000320 000321 GGGGCTGCCA CTGAGGAGAG AGAAGACTGA AAGAAGCATA TAGATAAAAG TTTCAGTTAC CTGAGGTCAA CCTTGGTCTG 000400 000401 AAATTAGATT ATCTGAGTAG GCTGAACCAT CGGTGAAAAG GAGGCCAAGC ATCTCAAAAA TAGGACACGT GAGAGTATGG 000480 000481 AGCCAATGTG ACACTCAGGT GAGTTAGCCT TATGATCCCT AAGCATGCAG TCCTTGGACC AGATGCATCA GGATCTTCTG 000560 000561 GTAAGTGTGC TAAAATATAG GCTACTGAGA CCCACCCTAT GTCTGTCAAA TCAGAATATT CTAAGGAAGC AGGTCCCAGG 000640 000641 GAATATATAT TTTAAAGCTC CCTAAATACA CTTCATGGGC TGCCAGATTT GGGAATCGCA GGATTAGGTA GCTACCTAAA 000720 000721 TGAAGACACT TAAATGTGCC AAAAGCTTCT CTTTCACCCA TCCATTTATC CATCTATTCA CCCATCCATC AACCAAACAT 000800 000801 GTGCCAGTAT CTGGTATTTG CTTCATGACC TGCTACTGCT GTGGTGGGTG CAAAGATAAA TGATCAATGT TCTCAAAGAG 000880 000881 TCAATAGTCT AAGAGAATGG ATGAATGAAG TATAAATAAT AAAAGATGTG CTATGAAGTA CGATGGGGGT CCAGAAAAGT 000960 000961 ATATACTTAT TCCAGATTGT GGCAGAAGAC TCTGGAGAGG TTTCGTTTTA TATAATGGCA TGAATTCCCC TTCAGATCCA 001040 001041 TCTCTAAATC AAGCTTCACC TACTTCTGAC TGTTTGTGTT AGATACCAAT CCTATGGATT TCTATAGTTT TCTGGAATTA 001120 001121 CTTTTTACAC ACTACAGTAG AGTTATGTGG CTGCTTCCAT GTTTTACTTA GAAGCTGAGA GCTTGATAAA AGTGAAGGCT 001200 001201 GCATCTTAAT CATCACCTTT TCCCCCACCT CCTAGCTAGG GTCTGGCTCT GCCTAAGCAG CTGCCATTGG TGCTCAATAA 001280 001281 ACATTGAAGA AGTTGGGTTG TTGCACTGGT TATGCAAAGA AAGGGACACA GTGGGTGTAA GCGTGGGGTG GGGAGCAAAG 001360 001361 CTGGGACCAA TCATGGAACA CCTAGAATTT GAATCAAATT TGGGCTTTAG TTTTTAGGCA ATGAGCCTAA GACAATTTTG 001440 001441 GAAGCATCCT TTGTTCACAA AAAAGTTAGA AATGGTGAGA ACTAGGGCAG TCTATCACAA AGTGTGGGAG AGGTAATTTT 001520 001521 ATATGTAAAC TATTATAAAT CACATTTGAG TTATGAAGTG AGACAATTAT TCCCTTTGCA GTTTCATTTC ATTCTGTCTA 001600 001601 ATTATTTCAG GGAGACATTC TGAATTGGGT GCTAGTATTT TAACACTTCT CTAACACTTT CTCTTTTTAA ATTTTGTTTA 001680 001681 TTTTTAATTG ACAAATAATA ATTGTGTATA TTTATGGGGT ACATTGGGCA TGGAGGGTGG GTTATTCTGT GATGTCTTGA 001760 001761 CCTGTGTGTA CATTGTAACA CTTCTCTAAT ACTTTCTAAT CCAGCCATCC CCAACCTTTT TGGCACCAGG AACCAGTTTT 001840 001841 GTGGAAGACG ATTTTTCCAC AGATGGTTGG GGGATGATTT TGGGATGGAA CTATTCCACC TCAGATCATC AGGCATTAGA 001920 001921 TTCTCATAAG AAGCATGCAA CGTAGATCCC TCACATATAC AGTTCACAAT AGGGTTCATG GTTCTATGAG AATCTAATGC 002000 002001 TGCCACTGAT CTAACAGGAG GCAGAGCTCA GCTGATAATG CTTTTTCACC TGCTACTGAC TTCCTGCTGT GTTGCCCAGT 002080 002081 TCCTAACGGG CCATAGACTG GTACCAGTCC ATAGCCTGGG GCTTGAGGAC CCCTGCTCTA TGATGTCTAT ACAACAATAA 002160 002161 AATTGCCTAA TGATACATTT CTCAGAATGT ATACCCATCA TTAAGTGACA CATGGCTGCT TGTGTATTTT TATATATAGC 002240 002241 TAAATGTGGC TAGATTAGAT GTGATATCTC TTTGGATGCA GGGATAGGTG GGCAAGTTTC TAAAACACGA AACTAACTGT 002320 002321 GTCTTTTCTC TGCTTAAGAA CCTTCCATGA CTCCCTGTTG TTCATAACCG GATAAATTCT AAGCTGCCTA ACTCAGAATT 002400 002401 CTAGCTTAGA GATGTCTACG CCTGGCTGCT CCCAACAGTT AGTCTCATGT CCTGTCTCAA ACATGGGGCT TCAGTAAGAA 002480 002481 TGAAATTTCC AAGGAGAATT TTATATTCTG CATGCCTTTA AAGGCTCAAG CCTGGAGACC CCCCTTCTTG CCTCTCTTAC 002560 002561 CCTTTTCACC AGGGCACCCT CTATTCATCC TTCCAGAGCC TTCTCTGGGA AGTCCTTTCC CAAAGCCCAC TTCCCAGCCT 002640 002641 AAGCTTAGTG CTATTTCTGT AGATACCCAG AAACACATCA ACTATATGTA CAGTTTACCC TAGTATGTCA AAGTTATAGT 002720 002721 TACTGCCTTA GGAGGGATTT TGAGCTTTTC ATCTTTATTA CTCGGGCTTC TGCTACTGTG TCAAGCAGGT AGTTGACACT 002800 002801 CAACAAATGT TTGTTTAGCC TAACTCAGCA GAACACATGG AGTGTGTTCA CATGGAGTAA CCTGATTTTG CTTAGTCTGC 002880 002881 AACATTTCTT GCATGCATCC CCTGCTTGCA GTCTCAATTA CAGTCATCCT GTTTCAGTTT TCTTAACTTG TCACTCCCTT 002960 002961 CCTCTGATAA CTTTTGCCAT ACCTCTGTAT AACATGGCCT ACTTTTTGAA AAAGATTTTT TTACATTCAC CTACATTTGT 003040 003041 CTCAAATTTT TTTTTAAAAG AAACTTTGTA TTACTACCGT CATTGAAAAC CTTCATCACT TGGCACAAAA GAAAGTTTAA 003120 003121 AAAATACAAC AAAAGACATT CTACTAAATT CTGGCTAGAC AACCTTGCCT GCTCTAGTAG ATGCACTGAG ACCATTAATG 003200 003201 AATCTTTCAT CCCACCTTGT GTCATATTCT TTGCCACATG ACTTTGGGTC TCCCTCACTA CTAGGCAAGT TCCTGTCTCC 003280 003281 ATCTCTTGAT TCTGAATTCA GCCATAATAC TTGCTCTCCC CAATGTTGTT TTAGCAGATT TGACACATAC AGAAGCGTGA 003360 003361 AAAACTCTTG TGTGACTGGG ATAGCTCCTC TGCAATGAGA ACATGCCTGG GATAATGTAC TGAAAAGATG TGAGAAATAC 003440 003441 ATGAAGCAGA GTCCAGTCAT CCCAGCCAAG AACCAGCTGT GAATGTAACC GCATGACTTT GAGGCAAGTC CAGACCAAGA 003520 003521 ACAAAGAACC ACTGGTCTTA AAGACAGACC TGCAGATTCC TGAGCTAAAT AAAAGTTTAT TGTTGAAAGG C |
Predicted Small Protein
Name | NONHSAT104646_smProtein_3197:3397 |
Length | 67 |
Molecular weight | 7243.0877 |
Aromaticity | 0.106060606061 |
Instability index | 62.9439393939 |
Isoelectric point | 6.79315185547 |
Runs | 11 |
Runs residual | 0.0160587915079 |
Runs probability | 0.0491561079798 |
Amino acid sequence | MNLSSHLVSYSLPHDFGSPSLLGKFLSPSLDSEFSHNTCSPQCCFSRFDTYRSVKNSCVT GIAPLQ |
Secondary structure | LLLLLEEEEELLLLLLLLHHHHLLLLLLLLLLLLLLLLLLLLEEEEELLEEEEEELLEEE EEELLL |
PRMN | - |
PiMo | - |